Mammals,
including
humans,
are
severely
limited
in
their
capability
for
limb
regeneration,
only
being
able
to
regenerate
amputated
digit
tips.
Axolotl
salamanders
(Ambystoma
mexicanum),
however,
whole,
functional
limbs
following
amputation.
For
this
reason,
regeneration
the
axolotl
is
a
strong
model
understanding
how
elicit
more
robust
regenerative
response
mammals.
The
process
by
which
axolotls
broadly
occurs
three
steps:
wound
healing,
blastema
formation/proliferation,
and
patterning.
In
dissertation,
I
focus
on
latter
two
steps.
my
first
chapter,
provide
brief
overview
of
with
cell
cycling
patterning
during
while
relating
embryonic
development.
second
present
published
work
from
collaboration
between
Monaghan
Shefelbine
Labs
outlining
method
dimensional
volumetric
imaging
macromolecule
synthesis
whole
mount
tissues.
Using
method,
we
quantify
rate
DNA
innervated
denervated
blastemas
show
that
transection
nerve
supply
slows
synthesis.
chapter
three,
revision
where
generated
ubiquitous
FUCCI
(fluorescent
ubiquitination-based
cycle
indicator)
transgenic
reports
state
in-vivo.
This
animal
line
enables
discrimination
cells
G1
phase
S/G2/M
phases.
By
using
line,
were
live
image
formation,
demonstrate
local
contribution
blastema,
arrest
denervation.
My
next
chapters
four,
retinoic
acid
(RA)
breakdown
required
positional
identity
distally
limbs,
but
not
proximally
limbs.
If
RA
perturbed
distal
observe
duplications
proximal
segments
We
proximalization
due
molecular
reprogramming
it
requires
de-novo
signaling
proximalize.
Limb
often
described
as
recapitulation
Thus,
explore
development
five.
utilize
hybridization
chain
reaction
fluorescence
in-situ
(HCR
FISH)
evidence
an
evolutionarily
novel
mechanisms
whereby
produced
bud,
unlike
amniotes.
speculate
difference
may
contribute
axolotl's
lifelong
capabilities
absent
final
outline
future
directions
presented
through
all,
dissertation
should
foundation
many
studies
will
hopefully
improving
humans.--Author's
abstract
Developmental Dynamics,
Journal Year:
2022,
Volume and Issue:
251(9), P. 1509 - 1523
Published: April 11, 2022
Axolotls
can
regenerate
their
limbs.
In
limb
regeneration
process,
developmental
genes
are
re-expressed
and
reorganize
the
axes,
in
which
position-specific
properly
re-expressed.
However,
how
such
position
specificity
is
reorganized
processes
has
not
been
clarified.
To
address
this
issue,
we
focused
on
reactivation
process
of
Lmx1b,
determines
dorsal
identity
many
animals.Here,
show
that
Lmx1b
expression
maintained
skin
before
amputation
activated
after
amputation.
Furthermore,
demonstrate
only
cells
located
side
prior
to
could
reactivate
We
also
found
activation
was
achieved
by
nerve
presence.
The
factors,
BMP2+FGF2+FGF8
(B2FF),
consistently
when
applied
skin.These
results
imply
retained
intact
plays
a
role
positional
memory,
instruct
about
spatial
positioning
This
memory
reactivated
nerves
or
factors
trigger
entire
process.
Our
findings
highlight
amphibian
regeneration,
including
both
initiation
gene
expression.
Development,
Journal Year:
2024,
Volume and Issue:
151(1)
Published: Jan. 1, 2024
During
salamander
limb
regeneration,
a
blastema
–
mass
of
progenitor
cells
forms
at
the
site
amputation.
The
proliferates,
differentiates
and
is
patterned
to
form
regenerated
tissues
(McCusker
et
al.,
2015)
in
process
that
has
often
been
compared
initial
development
limb.
Indeed,
there
are
many
important
molecular
parallels
between
developmental
bud;
however,
regeneration
presents
with
unique
challenges
not
present
during
development.
development,
bud
follows
consistent
progression
steps,
emerging
from
predefined
position
specific
time
animal's
Regeneration,
by
contrast,
must
restore
missing
structures,
composition
size
which
varies
greatly
injury
as
animal
increases
through
growth
2015).
Crucially,
correctly
establish
its
along
proximodistal
axis
for
precise
replacement
components.
Further,
orientation
coordinates,
such
dorsoventral
anterior-posterior
axes,
be
properly
specified
regenerate
appropriate
structures
correctly,
largely
achieved
redeployment
fibroblast
factor
(FGF),
sonic
hedgehog
(SHH)
bone
morphogenetic
protein
(BMP)
signaling
gradients,
but
increasing
evidence
supports
hypothesis
population
mature
retains
positional
memory
their
migration
into
instructs
patterning
2015;
Otsuki
Tanaka,
2021).
Until
recently,
identity
mechanisms
cell
remained
mysterious.In
preprint,
colleagues
make
compelling
case
group
Hand2-expressing
dermal
fibroblasts
posterior
may
represent
seat
this
axolotl
(Ambystoma
mexicanum)
(Otsuki
2023
preprint).
Hand2
transcription
activates
Shh
expression
zone
posteriorizing
activity
(ZPA)
then
initiates
regulatory
cascade
directs
polarity
developing
(Charité
2000).
Through
transcriptomics
several
sophisticated
reporter
animals,
demonstrate
that,
whereas
gene
fades
shortly
after
maintains
study
uses
inducible
Cre
reporters
trace
lineage
expressed
real-time
express
regeneration.
authors
find
descended
Shh-expressing
ZPA
do
not,
whole,
major
contribution
regenerating
In
they
see
those
later
enriched
regenerative
ZPA.Having
found
give
rise
within
ZPA,
sought
examine
whether
functionally
required
role,
using
CRISPR
mutagenesis.
45%
F0Hand2
CRISPants
displayed
defects
were
seen
controls.
These
amplified
75%
showing
defects.
mosaic
knockout
reduces
degree
disruption
correlates
severity
both
phenotypes.
also
tested
ability
CRISPant
tissue
accessory
model
(ALM).
ALM,
skin
grafted
an
innervated
wound
anterior
part
limb;
wild-type
induces
ectopic
graft
(Carlson,
1974;
Endo
2004).
does
induce
limb,
suggesting
activity.
overexpressed
Prrx1-promoter
driven
Hand2;
Prrx1
throughout
mesenchyme.
F0
saw
range
phenotypes
polydactyly
formation
limbs,
indicating
overexpression
sufficient
expression.
Anterior
animals
strong
induced
limbs
when
transplanted
weak
did
not.
Together,
these
results
suggest
necessary
regeneration.With
likely
carries
memory,
could
reprogram
They
created
Alx4-mCherry
label
Hand2-GFP
tissue.
Alx4-expressing
When
anterior,
stopped
expressing
Alx4
began
Shh,
can
reprogrammed
Conversely,
continued
locations,
once
programmed,
becomes
fixed.
performed
similar
experiments
presence
inhibition,
agonists,
finding
expression,
potentially
enforcing
fixed
regeneration.Considering
results,
speculate
specifies
bud,
initiating
long-lasting
small
subpopulation
cells.
model,
retain
axolotl's
life,
allowing
it
recall
events.
Recent
transcriptional
lineage-tracing
studies
transition
arguably
some
previous
identities:
although
most
origin,
other
contribute
blastema.
populations
distinct
identities
entire
process,
giving
same
derived
(Kragl
2009;
Currie
2016;
Choi
2017;
Flowers
Gerber
2018;
Leigh
2018).
combined
recent
findings
colleagues,
picture
emerges
have
discrete
aspects
identities,
despite
undergoing
drastic
changes
behavior,
morphology
Inevitably,
reprogrammed,
because
no
way
fingers
stubbornly
elbow
memories,
and,
arguably,
profound
preprint
pertain
reprogramming.
cellular
identity,
more
'stubborn'
than
others,
Alx4,
identity.
beautifully
illustrate
(in
figure
5d),
competence
limited
state.
An
obvious
future
direction
circuitry
perhaps
interesting
massively
upregulates
response
injury,
allows
reprogramming
Another
our
shows
amputation
triggers
body-wide
proliferation
axolotls,
priming
creation
(Payzin-Dogru
2023).
As
already
primed
would
respond
systemic
signals
provoked
Ultimately,
field
will
benefit
we
elucidate
different
origins
descendent
heed
common
call
enter
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Nov. 17, 2024
Abstract
Embryogenesis
is
commonly
viewed
through
a
tree
model
of
cell
differentiation,
which
does
not
adequately
represent
the
spatiotemporal
modulation
multipotency
underlying
morphogenesis.
Here
we
develop
an
integrated
approach,
combining
in
vivo
single-cell
high-throughput
clonal
lineage
tracing
with
machine
learning,
to
systematically
decompose
continuous
spectra
fate
biases
mouse
embryos
traced
from
neurulation
until
mid-gestation.
The
reconstructed
patterns
variation
uncovered
gene
programs
driving
dynamic
positional
biasing
composition
during
axial
skeletogenesis
and
peripheral
neurogenesis.
Mosaic
combinatorial
perturbations
targeting
multiple
receptors,
including
Hedgehog
pathway,
led
novel
clone
types,
has
implications
for
engineering
custom
type
assemblages
well-defined
progenitors
.
Altogether,
our
work
demonstrates
effective
practical
approach
interrogating
guiding
specification.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: March 4, 2022
ABSTRACT
In
processes
such
as
development
and
regeneration,
where
large
cellular
tissue
rearrangements
occur,
cell
fate
behavior
are
strongly
influenced
by
mechanics.
While
most
well-established
tools
probing
mechanical
properties
require
an
invasive
sample
preparation,
confocal
Brillouin
microscopy
captures
parameters
optically
with
high
resolution
in
a
contact-free
label-free
fashion.
this
work,
we
took
advantage
of
tool
the
transparency
highly
regenerative
axolotl
to
probe
its
vivo
for
first
time.
We
mapped
frequency
shift
developing
limbs
regenerating
digits,
studied
structures
axolotl.
detected
gradual
increase
cartilage
shift,
suggesting
decreasing
compressibility
during
both
regeneration.
Moreover,
were
able
correlate
regeneration
stage,
which
was
undetected
fluorescence
imaging.
The
present
work
evidences
potential
unravel
changes
occurring
axolotls,
setting
basis
apply
technique
growing
field
epimorphic
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2022,
Volume and Issue:
unknown
Published: Dec. 29, 2022
ABSTRACT
Xenopus
young
tadpoles
regenerate
a
limb
with
the
anteroposterior
(AP)
pattern,
but
metamorphosed
froglets
hypomorphic
after
amputation.
The
key
gene
for
AP
patterning,
shh
,
is
expressed
in
regenerating
of
tadpole
not
that
froglet.
Genomic
DNA
limb-specific
enhancer,
MFCS1
(ZRS),
hypermethylated
hypomethylated
tadpoles:
expression
may
be
controlled
by
epigenetic
regulation
MFCS1.
Is
specifically
activated
AP-patterned
limb?
We
generated
transgenic
laevis
lines
visualize
enhancer
activity
GFP
reporter.
showed
hoxd13-
and
shh-
expressing
domains
developing
limbs,
whereas
no
limbs
despite
having
hoxd13
expression.
Genome
sequence
analysis
co-transfection
assays
using
cultured
cells
revealed
Hoxd13
can
activate
These
results
suggest
activation
correlates
regeneration
re-activation
epigenetically
inactivated
would
crucial
to
confer
ability
non-regenerative
animals
properly
patterned
limb.
Mammals,
including
humans,
are
severely
limited
in
their
capability
for
limb
regeneration,
only
being
able
to
regenerate
amputated
digit
tips.
Axolotl
salamanders
(Ambystoma
mexicanum),
however,
whole,
functional
limbs
following
amputation.
For
this
reason,
regeneration
the
axolotl
is
a
strong
model
understanding
how
elicit
more
robust
regenerative
response
mammals.
The
process
by
which
axolotls
broadly
occurs
three
steps:
wound
healing,
blastema
formation/proliferation,
and
patterning.
In
dissertation,
I
focus
on
latter
two
steps.
my
first
chapter,
provide
brief
overview
of
with
cell
cycling
patterning
during
while
relating
embryonic
development.
second
present
published
work
from
collaboration
between
Monaghan
Shefelbine
Labs
outlining
method
dimensional
volumetric
imaging
macromolecule
synthesis
whole
mount
tissues.
Using
method,
we
quantify
rate
DNA
innervated
denervated
blastemas
show
that
transection
nerve
supply
slows
synthesis.
chapter
three,
revision
where
generated
ubiquitous
FUCCI
(fluorescent
ubiquitination-based
cycle
indicator)
transgenic
reports
state
in-vivo.
This
animal
line
enables
discrimination
cells
G1
phase
S/G2/M
phases.
By
using
line,
were
live
image
formation,
demonstrate
local
contribution
blastema,
arrest
denervation.
My
next
chapters
four,
retinoic
acid
(RA)
breakdown
required
positional
identity
distally
limbs,
but
not
proximally
limbs.
If
RA
perturbed
distal
observe
duplications
proximal
segments
We
proximalization
due
molecular
reprogramming
it
requires
de-novo
signaling
proximalize.
Limb
often
described
as
recapitulation
Thus,
explore
development
five.
utilize
hybridization
chain
reaction
fluorescence
in-situ
(HCR
FISH)
evidence
an
evolutionarily
novel
mechanisms
whereby
produced
bud,
unlike
amniotes.
speculate
difference
may
contribute
axolotl's
lifelong
capabilities
absent
final
outline
future
directions
presented
through
all,
dissertation
should
foundation
many
studies
will
hopefully
improving
humans.--Author's
abstract