Microorganisms,
Journal Year:
2023,
Volume and Issue:
11(11), P. 2746 - 2746
Published: Nov. 10, 2023
Despite
the
extensive
research
conducted
on
ruminal
methanogens
and
anti-methanogenic
intervention
strategies
over
last
50
years,
most
of
currently
researched
enteric
methane
(CH4)
abatement
approaches
have
shown
limited
efficacy.
This
is
largely
because
complex
nature
animal
production
environment,
host
genetic
variability
CH4
production,
an
incomplete
understanding
role
microbiome
in
emissions.
Recent
sequencing-based
studies
suggest
presence
methanogenic
archaea
extra-gastrointestinal
tract
tissues,
including
respiratory
reproductive
tracts
cattle.
While
these
sequencing
data
require
further
verification
via
culture-dependent
methods,
consistent
identification
with
relatively
greater
frequency
airway
urogenital
cattle,
as
well
increasing
appreciation
microbiome-gut-organ
axis
together
highlight
potential
interactions
between
communities.
Thus,
a
traditional
singular
focus
may
not
be
sufficient,
holistic
approach
which
takes
into
consideration
transfer
ruminal,
extra-gastrointestinal,
environmental
microbial
communities
necessity
to
develop
more
efficient
long-term
mitigation
strategies.
In
present
review,
we
provide
survey
different
anatomical
sites
cattle
discuss
seeding
sources
methanogens.
Biology of Reproduction,
Journal Year:
2024,
Volume and Issue:
111(2), P. 242 - 268
Published: May 2, 2024
Abstract
The
field
of
Developmental
Origins
Health
and
Disease
has
primarily
focused
on
maternal
programming
offspring
health.
However,
emerging
evidence
suggests
that
paternal
factors,
including
the
seminal
microbiome,
could
potentially
play
important
roles
in
shaping
developmental
trajectory
long-term
health
outcomes.
Historically,
microbes
present
semen
were
regarded
as
inherently
pathogenic
agents.
this
dogma
recently
been
challenged
by
discovery
a
diverse
commensal
microbial
community
within
healthy
males.
In
addition,
recent
studies
suggest
transmission
semen-associated
into
female
reproductive
tract
during
mating
potentials
to
not
only
influence
fertility
embryo
development
but
also
contribute
offspring.
review,
we
summarize
current
knowledge
microbiota
both
humans
animals
followed
discussing
their
potential
involvement
We
propose
discuss
mechanisms
through
which
influences
are
transmitted
via
microbiome.
Overall,
review
provides
insights
microbiome-based
programing,
will
expand
our
understanding
currently
epigenetic
modifications,
oxidative
stresses,
cytokines.
Reproduction Fertility and Development,
Journal Year:
2024,
Volume and Issue:
36(5)
Published: March 6, 2024
Addition
of
antibiotics
to
semen
extenders
was
taken
for
granted
many
years,
from
the
time
that
commercial
artificial
insemination
in
livestock
first
began
decades
ago.
However,
there
is
now
a
growing
realisation
this
non-therapeutic
utilisation
antibacterial
agents
contrary
current
recommendations
prudent
use
medical
and
veterinary
professionals
are
advised
follow.
Furthermore,
not
benign,
having
negative
effects
on
sperm
samples,
inseminated
female,
personnel
potentially
environment.
The
purpose
review
three-fold:
highlight
fact
used
extenders,
with
result
considerable
amounts
globally
animal
breeding,
recent
studies
aspects
using
purpose,
look
at
possible
alternatives.
Recent
changes
legislation
regarding
occurred
some,
but
all,
countries,
leaving
question
marks
producers
as
whether
should
be
added
or
not.
Frontiers in Microbiology,
Journal Year:
2023,
Volume and Issue:
14
Published: June 26, 2023
Early
life
microbial
colonization
and
factors
affecting
patterns
are
gaining
interest
due
to
recent
developments
suggesting
that
early
microbiome
may
play
a
role
in
Developmental
Origins
of
Health
Disease.
In
cattle,
limited
information
exists
on
the
anatomical
sites
involved
bovine
health
beyond
gastrointestinal
tract.
Here,
we
investigated
1)
initial
seven
different
locations
newborn
calves
2)
whether
these
communities
3)
serum
cytokine
profiles
influenced
by
prenatal
vitamin
mineral
(VTM)
supplementation.
Samples
were
collected
from
hoof,
liver,
lung,
nasal
cavity,
eye,
rumen
(tissue
fluid),
vagina
beef
born
dams
either
received
or
did
not
receive
VTM
supplementation
throughout
gestation
(n
=
7/group).
Calves
separated
immediately
after
birth
fed
commercial
colostrum
milk
replacer
until
euthanasia
at
30
h
post-initial
feeding.
The
microbiota
all
samples
was
assessed
using
16S
rRNA
gene
sequencing
qPCR.
Calf
subjected
multiplex
quantification
15
cytokines
chemokines.
Our
results
indicated
colonized
site-specific
microbiota,
whose
community
structure
differed
ruminal-associated
(0.64
≥
R2
0.12,
p
≤
0.003).
ruminal
fluid
only
one
treatment
(p
<
0.01).
However,
differences
0.05)
detected
richness
(vagina);
diversity
(ruminal
tissue,
fluid,
eye);
composition
phylum
genus
level
vagina);
total
bacterial
abundance
(eye
vagina).
From
evaluated,
concentration
chemokine
IP-10
greater
0.02)
compared
control
calves.
Overall,
our
suggest
upon
birth,
whole-body
relatively
rich,
diverse,
communities.
Noticeable
observed
ruminal,
vaginal,
ocular
response
These
findings
can
derive
future
hypotheses
regarding
body
sites,
maternal
micronutrient
consumption
as
factor
influence
colonization.
Animal Reproduction,
Journal Year:
2023,
Volume and Issue:
20(2)
Published: Jan. 1, 2023
Paternal
programming
is
the
concept
that
environmental
signals
from
sire's
experiences
leading
up
to
mating
can
alter
semen
and
ultimately
affect
phenotype
of
resulting
offspring.
Potential
mechanisms
carrying
paternal
effects
offspring
be
associated
with
epigenetic
signatures
(DNA
methylation,
histone
modification
non-coding
RNAs),
oxidative
stress,
cytokines,
seminal
microbiome.
Several
opportunities
exist
for
sperm/semen
influenced
during
development;
these
are
within
testicle,
epididymis,
or
accessory
sex
glands.
Epigenetic
sperm
impacted
pre-natal
pre-pubertal
periods,
sexual
maturity
advancing
sire
age.
Sperm
susceptible
alterations
as
dictated
by
their
developmental
stage
at
time
perturbation,
plasma
likely
have
both
dependent
independent
on
Research
using
rodent
models
has
revealed
many
factors
including
over/under
nutrition,
dietary
fat,
protein,
ingredient
composition
(e.g.,
macro-
micronutrients),
exercise,
exposure
drugs,
alcohol,
endocrine
disruptors
all
elicit
responses
evident
in
phenotype.
livestock
species
also
age,
fertility
level,
plane
heat
stress
induce
epigenetic,
cytokine,
microbiome
profiles
and/or
plasma.
In
addition,
recent
findings
pigs,
sheep,
cattle
indicated
blastocysts
post-fertilization
some
continuing
into
post-natal
life
Our
research
group
focused
understanding
common
management
scenarios
nutrition
growth
rates
bulls
rams
subsequent
outcomes.
Understanding
implication
imperative
short-term
feeding
decisions
potential
impact
productivity
profitability
our
herds
generations
come.
Microbiology Spectrum,
Journal Year:
2023,
Volume and Issue:
11(6)
Published: Nov. 3, 2023
Emerging
evidence
suggests
that
microbiome-targeted
approaches
may
provide
a
novel
opportunity
to
reduce
the
incidence
of
reproductive
failures
in
cattle.
To
develop
such
microbiome-based
strategies,
one
first
logical
steps
is
identify
microbiome
features
related
fertility
and
isolate
fertility-associated
microbial
species
for
developing
future
bacterial
consortium
could
be
administered
before
breeding
enhance
pregnancy
outcomes.
Here,
we
characterized
vaginal
uterine
microbiota
beef
cattle
became
pregnant
or
remained
open
via
artificial
insemination
identified
associated
with
fertility.
We
compared
similarities
between
heifers
cows.
Using
culturing,
provided
new
insights
into
culturable
fraction
their
antimicrobial
resistance.
Overall,
our
findings
will
serve
as
an
important
basis
research
aimed
at
harnessing
improved
Microbiology Spectrum,
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 24, 2025
ABSTRACT
Fusobacterium
necrophorum
is
an
important
pathogen
associated
with
several
infectious
diseases
in
cattle.
However,
recent
sequencing-based
studies
reported
that
F.
may
be
positively
pregnancy
beef
cows
and
highly
abundant
bull
seminal
microbiota
potential
involvement
reproductive
health
fertility.
Here,
we
performed
a
comprehensive
screening
to
(i)
determine
the
prevalence
of
(subspecies
[FNN]
funduliforme
[FNF])
varium
(FV)
cattle
sheep
as
well
bovine
digestive
tract
ecosystems,
(ii)
explore
whether
these
spp.
colonize
calf
prenatally.
For
this,
screened
11
different
sample
types
including
ram
semen,
vaginal
uterine
swabs,
fecal
samples,
samples
from
180-
260-day-old
fetuses
their
respective
dams
using
both
quantitative
PCR
(qPCR;
514
samples)
targeted
culturing
(499
samples).
By
qPCR,
all
were
detected
across
varying
rates
viability.
FNF
was
prevalent
semen
(66.7%)
maternal
ruminal
fluids
(87.1%),
its
viability
confirmed
through
culturing.
All
identified
swab
(3.1%–9.4%),
caruncles,
fetal
fluids,
rumen,
meconium
(2.7%–26.3%)
by
qPCR
but
not
isolated
culture
method.
Overall,
our
results,
for
first
time,
suggest
commensal
member
healthy
male
microbiota,
FNF,
FNN,
FV
are
present
vagino-uterine
intestine
IMPORTANCE
Recent
Fusobacterium,
,
known
primary
etiological
agent
cattle,
non-pathogenic
members
pro-fertility
effects.
further
information
regarding
absolute
abundance,
viability,
higher
taxonomic
resolution
species
subspecies
which
cannot
achievable
amplicon
sequencing
approach
needed
confirm
status
over
500
qPCR.
results
provide
novel
insights
into
female
tracts
presence
fetuses,
will
serve
basis
research
understanding
role
Research Square (Research Square),
Journal Year:
2025,
Volume and Issue:
unknown
Published: March 26, 2025
Abstract
Background
Despite
widespread
use
of
antimicrobials
and
vaccines,
the
incidence
infectious
bovine
keratoconjunctivitis
(IBK),
or
pinkeye,
continues
to
increase
in
North
American
beef
cow-calf
operations.
Recent
research
suggests
that
there
is
potential
for
commensal
ocular
microbiome
help
mitigate
IBK.
Therefore,
this
study
characterized
cattle
with
without
IBK
using
culturing
shotgun
metagenomic
sequencing
assessed
ability
bacteria
inhibit
Moraxella
spp.
in
vitro.
Ocular
swabs
(n
=
143)
were
collected
from
IBK-affected
102)
healthy
41)
before
antimicrobial
treatment
Dakota
herds.
Bacteria
cultured
aerobically
anaerobically
on
five
different
media
isolates
identified.
A
subset
(37
IBK;
12
healthy)
underwent
sequencing.
The
genomes
31
isolates,
including
Moraxella
bovoculi,
bovis,
bacteria,
also
sequenced.
Fifty-two
screened
inhibition
an
agar
slab
method,
further
tested
presence
culturable
qPCR.
Results
351
bacterial
taxonomically
identified
represented
61
genera
three
phyla.
majority
belonged
Bacillus
(25.9%),
Streptococcus
(11.1%),
Staphylococcus
(10.1%),
(9.4%)
genera.
Shotgun
analysis
revealed
significant
differences
composition
between
(R²
0.042;
P
0.034).
Dominant
species
included
Cutibacterium
acnes,
Mannheimia
pernigra,
Mesomycoplasma
bovoculi.
Eight
species,
Bifidobacterium
globosumBacillus
licheniformis,
more
abundant
cattle,
while
Arthrobacter
luteus
was
enriched
cases.
Thirty-seven
high-quality
metagenome-assembled
recovered,
27%
classified
as
exhibited
strain-specific
resistance
virulence
gene
diversity.
Seventeen
inhibited
Moraxella,
Weizmannia
coagulans,
Lentilactobacillus
buchneri,
Paenibacillus
polymyxa
showing
strong
activity.
Selected
maintained
inhibitory
effects
co-culture
microbiome.
Conclusion
surface
inhabited
by
a
diverse
includes
several
strains
have
be
used
therapeutics
pathogens.
Animals,
Journal Year:
2025,
Volume and Issue:
15(10), P. 1368 - 1368
Published: May 9, 2025
This
study
evaluated
the
impact
of
different
processing
techniques
on
microbial
load
and
sperm
quality
in
frozen–thawed
equine
semen
to
identify
alternatives
reduce
preventive
use
antibiotics.
Semen
was
obtained
processed
under
rigorous
hygiene
measures
from
ten
stallions,
using
four
protocols:
Simple
Centrifugation
with
antibiotics
(S+)
(S−),
Filtration
(F−)
Single-Layer
Colloidal
(C−)
an
antibiotic-free
extender.
Microbial
culture
media,
viability
motility
were
assessed.
results
consistent
across
protocols,
except
Columbia
5%
Sheep
Blood
Agar
where
S−
exhibited
higher
than
S+
(p
<
0.05).
However,
F−
C−
showed
similar
loads
S+.
No
significant
differences
observed
progressive
motility,
average
path
velocity,
straight-line
velocity
or
wobble
parameters
between
protocols.
Total
significantly
compared
other
treatments
Thus,
regardless
antibiotics,
proposed
methods
achieved
traditional
antibiotic-inclusive
protocol
terms
most
relevant
parameters.
These
findings
suggest
that
C−,
combined
optimized
measures,
offers
effective
alternative
prophylactic
extenders.
Sensors,
Journal Year:
2023,
Volume and Issue:
23(15), P. 6978 - 6978
Published: Aug. 6, 2023
The
primary
role
of
semen
processing
and
preservation
is
to
maintain
a
high
proportion
structurally
functionally
competent
mature
spermatozoa,
that
may
be
used
for
the
purposes
artificial
reproduction
when
needed,
whilst
minimizing
any
potential
causes
sperm
deterioration
during
ex
vivo
handling.
Out
multitude
variables
determining
success
preservation,
bacterial
contamination
has
been
acknowledged
with
an
increased
interest
because
its
often
unpredictable
complex
effects
on
quality.
Whilst
antibiotics
are
usually
most
straight-forward
option
prevent
semen,
antimicrobial
resistance
become
serious
threat
requiring
widespread
attention.
As
such,
besides
discussing
consequences
bacteriospermia
vitality
risks
antibiotic
overuse
in
andrology,
this
paper
summarizes
currently
available
evidence
alternative
strategies
prior
to,
during,
following
processing,
selection,
preservation.
Alternative
antibacterial
supplements
reviewed,
emphasis
given
modern
methods
selection
combined
by
physical
removal
bacteria
or
use
assisted
reproductive
technologies.
bioRxiv (Cold Spring Harbor Laboratory),
Journal Year:
2024,
Volume and Issue:
unknown
Published: Oct. 16, 2024
ABSTRACT
Fusobacterium
necrophorum
is
an
important
pathogen
associated
with
several
infectious
diseases
in
cattle.
However,
recent
sequencing-based
studies
have
indicated
that
F.
positively
pregnancy
beef
cows
and
the
most
abundant
genus
bull
seminal
microbiota,
suggesting
potential
role
of
reproductive
health
fertility.
Here,
we
performed
a
comprehensive
screening
to
1)
determine
whether
(subspecies
[FNN]
funduliforme
[FNF]),
varium
(FV)
are
part
commensal
members
microbiota
cattle;
2)
explore
these
spp.
colonized
calf
prenatally.
For
this,
screened
11
different
sample
types
including
bovine
ram
semen,
vaginal
uterine
swabs,
fecal
samples,
as
well
samples
from
180-
260-days
old
fetuses
their
respective
dams
using
both
quantitative
PCR
(514
samples)
targeted
culturing
(499
samples).
By
qPCR,
all
were
detected
across
types,
FNF
being
highly
prevalent
semen
(66.7%)
maternal
ruminal
fluids
(87.1%),
which
was
confirmed
by
culturing.
All
identified
(3.1%-9.4%)
placental
caruncles,
fetal
fluids,
meconium
(2.7%
-
26.3%)
qPCR
not
isolated
culture
method.
Overall,
our
results
suggest
member
healthy
male
FNF,
FNN
FV
present
vagino-uterine
intestine