Research trends and hotspots of intratumor microbiome: A comprehensive visualization and bibliometric study from 2012 to 2024 DOI Creative Commons

Chaoyue Xiao,

Feng Xiang,

Tiantian Zhao

и другие.

Chinese Medical Journal, Год журнала: 2024, Номер unknown

Опубликована: Дек. 10, 2024

To the Editor: As early as in mid-19th century, microbiologists first recognized multiple microorganisms within human tumors. Nevertheless, perceptions of intratumor microbiome have made little progression during 50 years 20th century owing to contamination interference, experimental irreproducibility, and technical limitations. Strikingly, past decade, advances detection techniques analytical tools been opening unprecedented opportunities widely investigate manifold characteristics low-biomass host–microbe interplays. In second decade 21st researchers focusing on gradually emerged. Initially, this adventurous perspective failed draw much attention because tumors were still considered sterile mainstream belief at that time. realized significant role tumor biology, immunity, metabolism a non-negligent new component microenvironments (TME), soon became hot. Gradually, microbiomes emerged diagnostic prognostic biomarkers, even strenuous endeavors devoted tapping their potential therapeutic targets.[1–5] Yet, it remains left translate microbes-based tumor-specific therapies into clinical practice. Therefore, there is great significance delineating research status evolution trend microbiome. We conducted bibliometric analysis 487 related publications extracted from Web Science Core Collection inception April 11, 2024 [Supplementary Methods Supplementary Figures 1 2, https://links.lww.com/CM9/C186], mapping current landscape hope proffering fresh clues for future research. There blowout annual publications, predictive annual/cumulative are 221 614, respectively, Figure 3, https://links.lww.com/CM9/C186]. Fifty-six countries published documents, wherein less than 20% them contributed more 10 4A Table 1, Most cooperation confined Europe, North America, handful Asian countries/institutions 4B–E, China has leading producer 7 out top productive institutions also held by China. But United States continued dominate field global center with overwhelming citations. This partially recently cut striking figure 4C, E, A total 3505 authors provided 84.9% single publication 5A, Only 489 co-authorship relationships 5B, C, Just Ravid Straussman Jennifer Wargo concurrently among prolific cited Deborah Nejman endowed higher citations H-index but does not possess reflecting his stringent quality control over publications. most co-cited author 5D, The come prominence last couple except distributed discontinuously 2018 2023 5E, Included sourced 232 journals, 14 journals judged core 6A, highest albeit only two Cell possesses link strength despite five whereas Cancers 6B classified 4 clusters 6C, Citing chiefly Molecular/Biology/Immunology Medicine/Medical/Clinical, called frontiers; Molecular/Biology/Genetics, knowledge base 6D, Thirteen documents ranked 20 local citation score (LCS) (GCS) 4, These incipient high LCS proffer theoretical basis subsequent exhaustive study biological functions. 7A, https://links.lww.com/CM9/C186 portrays relationships, while 7B, demonstrates document's impact field. 7C, further shows relationship LCS. 8A, depicts reference co-citation network, forming thorough examinations 8B, highly references since 2015, many continue be 8C 5, hotspots already shifted initial topics (e.g., #12, #17, #21, #23), #0 pancreatic cancer, #1 electroporation, #2 engineered bacteria, #5 microbiome-based therapy, etc., represent hotspots. Especially, therapy including bacteria generated one or years. burst can traced back Grivennikov SI, 2012, Nature, latest took place 2021, attributed Li S, 2017, Microbiome 8D, Notably, Geller LT, experienced strongest burst. Keyword frequency examined word clouds heatmap 9A–C 6, generally evincing emphasis. relatively homogeneous before principally prostate cancer gender; nevertheless, suddenly surged 2021 9D, Specifically, emergence some keywords top-left corner diagnosis, prognosis, biomarker, TME) gained 2 years, discernible shift orientation endeavors, diagnosis prognosis intense interests. Similarly, metastasis, metabolism, immune microenvironment, evolved salient 9E, gut microbiome, enduring recent Colorectal dysbiosis, 16s rRNA belong Motor Themes, denoting they themes maturity 9F, Whereas metastasis belongs Niche indicating well-developed banal. Conversely, Basic demonstrating enough, therefore may become trends. above prefigures trajectories, encompassing therapy. Below, we will elucidate far-reaching meaning realm implications directions. Correlation between microbiome: Gut could main origin directly invade gastrointestinal tissues via impaired mucosa, translocate non-mucosal organs, such pancreas through ducts. Furthermore, given cells immunocytes, transported form fractions intact cell migration. conjectures must validated holistic metagenomic sequencing genetic identification. Apart direct association microbial translocation, remote communication mediates latent connection. indirectly affect TME metabolites system, culminating altering modulate microbiome? Further warranted interplay its effects TME. Tumor immunomodulation: Intratumor reshapes microenvironment (TIME) modulating pro-tumoral antitumor immunity. microecology facilitates recruitment activation counteracts Meanwhile, augments immunity focus activation, exerts inhibitory immunocytes. Although exact mechanisms multitudinous immunomodulation yet elucidated, underlying include (1) valid presentation antigens, especially antigens mimicry shared antigens; (2) microbe-induced immunogenic death; (3) microbe-derived metabolites, (4) pattern recognition receptor-mediated adjuvanticity. Collectively, target supporting immunotherapy, context-dependent require clarification prior translation. It topic facing grand challenges deserves exploration. Metabolic regulation: reprograms convoluted 7, play double-edged sword TIME non-negligible mediators interactions. complicated impacts depend several factors, type, stage, host genotype, specific metabolite, which necessitates study. Targeting metabolic regulation should monumental subject research, comprehensive perception microbe enlighten strategies. Diagnosis prognosis: associated clinicopathological features age, gender, subtypes, histological grade), valuable indicator subtype stratification, staging classification. abundance responses outcomes, promising tool prognosis. Given invasiveness difficulty obtaining tissue samples, accumulating studies typically utilize alternative sputum bronchoalveolar lavage fluid. tumor-associated circulating DNA, biomarker liquid biopsy, Additionally, combining multiple-omics data other emerging sampling techniques, ingestible capsules sampling, favor precise Cancer therapy: multidimensional plays roles determining response antineoplastic therapies. Consequently, targeting adjuvant strategies following points: eliminating detrimental carcinogenic species; fostering beneficial microbiome; metabolite-based intervention reprogram TIME; ameliorate chemotherapy, radiotherapy; (5) microbe-inspired drug delivery. particular, technological development reformed design presents preferential tumors, aggressive penetration, easy recognition, controllable cytotoxicity. genetically release products trigger reactions handicapping function hitchhiking targeted delivery immunostimulators, toxins, drugs. somewhat challenging determine optimal dose dosing schedule live bacterial substances, administration substances risk life-threatening infections sepsis. combine conventional therapies, ideas upgrade efficacy. traditional Chinese medicine successfully applied few report about approach provides experience speculate triangular interaction medicine, microbiota, inevitable limitations Other database-derived non-English omitted. presented temporal limitation. bibliometrics constricted metadata rather full-text analysis. these would alter findings. Overall, visualization explore frontiers According systematical analysis, endows additional multivariate divergent an attractive target. depict microbiome-mediated molecular networks environment. Perhaps eventual destination Funding work was supported National Natural Foundation (No. 82150006), Society Clinical Oncology Research (Nos. Y-HR2017-117, Y-HH202102-0060), Beijing Medical Health YWJKJJHKYJJ-F3046D), Qujiang District Quzhou City Life Oasis Public Service Center BJHA-CRP-040), Wu Jieping 320.6750.2023-05-10) Yawen Gao. Conflicts interest None.

Язык: Английский

Fungi, immunosenescence and cancer DOI Creative Commons
Bin Xu,

Zan Luo,

Xing Niu

и другие.

Seminars in Cancer Biology, Год журнала: 2025, Номер 109, С. 67 - 82

Опубликована: Янв. 7, 2025

Язык: Английский

Процитировано

5

Beyond the Gut: The intratumoral microbiome's influence on tumorigenesis and treatment response DOI Creative Commons
Hao Zhang, Li Fu,

Xinwen Leiliang

и другие.

Cancer Communications, Год журнала: 2024, Номер 44(10), С. 1130 - 1167

Опубликована: Авг. 1, 2024

The intratumoral microbiome (TM) refers to the microorganisms in tumor tissues, including bacteria, fungi, viruses, and so on, is distinct from gut circulating microbiota. TM strongly associated with tumorigenesis, progression, metastasis, response therapy. This paper highlights current status of TM. Tract sources, adjacent normal tissue, circulatory system, concomitant co-metastasis are main origin advanced techniques analysis comprehensively summarized. Besides, involved progression through several mechanisms, DNA damage, activation oncogenic signaling pathways (phosphoinositide 3-kinase [PI3K], signal transducer activator transcription [STAT], WNT/β-catenin, extracellular regulated protein kinases [ERK]), influence cytokines induce inflammatory responses, interaction microenvironment (anti-tumor immunity, pro-tumor microbial-derived metabolites). Moreover, promising directions therapy include immunotherapy, chemotherapy, radiotherapy, application probiotics/prebiotics/synbiotics, fecal transplantation, engineered microbiota, phage therapy, oncolytic virus inherent challenges clinical also review provides a comprehensive landscape for analyzing TM, especially TM-related mechanisms TM-based treatment cancer.

Язык: Английский

Процитировано

8

The oncobiome; what, so what, now what? DOI Open Access

Munawar Abbas,

Mark Tangney

Microbiome Research Reports, Год журнала: 2025, Номер 4(1)

Опубликована: Фев. 27, 2025

Microbial communities inhabiting various body sites play critical roles in the initiation, progression, and treatment of cancer. The gut microbiota, a highly diverse microbial ecosystem, interacts with immune cells to modulate inflammation surveillance, influencing cancer risk therapeutic outcomes. Local tissue microbiota may impact transition from premalignant states malignancy. Characterization intratumoral increasingly reveals distinct microbiomes that influence tumor growth, responses, efficacy. Various bacteria species have been reported therapies through mechanisms such as altering drug metabolism shaping microenvironment (TME). For instance, or bacterial enzymatic activity can convert prodrugs into active forms, enhancing effects or, conversely, inactivating small-molecule chemotherapeutics. Specific also linked improved responses immunotherapy, underscoring microbiome’s role Furthermore, unique signatures patients, compared healthy individuals, demonstrate diagnostic potential microbiota. Beyond gut, tumor-associated local affect therapy by inflammation, resistance. This review explores multifaceted relationships between cancer, focusing on their modulating TME, activation, members represents promising avenue for advancing precision oncology improving patient By leveraging biomarkers interventions, new strategies be developed optimize diagnosis treatment.

Язык: Английский

Процитировано

0

RNA modifications in the tumor microenvironment: insights into the cancer-immunity cycle and beyond DOI Creative Commons
Yuan Ding, Cuicui Liu, Ke‐Da Yu

и другие.

Experimental Hematology and Oncology, Год журнала: 2025, Номер 14(1)

Опубликована: Апрель 2, 2025

Язык: Английский

Процитировано

0

The metabolic dialogue between intratumoural microbes and cancer: implications for immunotherapy DOI

Y. Situ,

Pengpeng Zhang, Cangang Zhang

и другие.

EBioMedicine, Год журнала: 2025, Номер 115, С. 105708 - 105708

Опубликована: Апрель 22, 2025

Язык: Английский

Процитировано

0

Emerging advances and future opportunities in the molecular and therapeutic landscape of anal cancer DOI
Franz Rödel,

Maximilian Fleischmann,

Markus Diefenhardt

и другие.

Nature Reviews Clinical Oncology, Год журнала: 2025, Номер unknown

Опубликована: Май 13, 2025

Язык: Английский

Процитировано

0

Decoding the role of intratumoral microbiota in gastric cancer DOI

Fenfang Gui,

Limei Zhang, Jin‐zhong Xiao

и другие.

Biochimica et Biophysica Acta (BBA) - Reviews on Cancer, Год журнала: 2025, Номер unknown, С. 189355 - 189355

Опубликована: Май 1, 2025

Язык: Английский

Процитировано

0

Targeting the gut and tumor microbiome in cancer resistance DOI
Soňa Čierniková, Aneta Sevcikova, Michal Mego

и другие.

AJP Cell Physiology, Год журнала: 2024, Номер 327(6), С. C1433 - C1450

Опубликована: Окт. 22, 2024

Therapy resistance represents a significant challenge in oncology, occurring various therapeutic approaches. Recently, animal models and an increasing set of clinical trials highlight the crucial impact gut tumor microbiome on treatment response. The intestinal contributes to cancer initiation, progression, formation distant metastasis. In addition, tumor-associated microbiota is considered critical player influencing microenvironments regulating local immune processes. Intriguingly, numerous studies have successfully identified pathogens within that might be linked poor response different modalities. unfavorable microbial composition with presence specific microbes participates progression via several mechanisms, including upregulation oncogenic pathways, macrophage polarization reprogramming, metabolism chemotherapeutic compounds, autophagy pathway modulation, enhanced DNA damage repair, inactivation proapoptotic cascade, bacterial secretion extracellular vesicles, promoting processes metastatic cascade. Targeted elimination intratumoral bacteria appears enhance However, broad-spectrum antibiotic pretreatment mostly connected reduced efficacy due dysbiosis lower diversity. Mounting evidence supports potential modulation by probiotics fecal transplantation improve increase diversity, leading while mitigating adverse effects. this context, further research concerning identification clinically relevant signatures followed microbiota-targeted strategies presents promising approach overcoming immunotherapy chemotherapy refractory patients, improving their outcomes.

Язык: Английский

Процитировано

2

Tissue source may affect the esophageal flora in patients with esophageal squamous cell carcinoma DOI Open Access
Xiaobo Liu,

Zi-ye Gao,

Wen Xu

и другие.

Oncology Letters, Год журнала: 2024, Номер 29(1)

Опубликована: Ноя. 13, 2024

The aim of the present study was to provide a theoretical basis for selection standard sampling methods in esophageal microbiota patients with squamous cell carcinoma (ESCC) by comparing differences bacterial communities between surgical and endoscopic mucosal tissues. A total 72 ESCC who were diagnosed at Taihe Hospital (Shiyan, China) July 2018 2019 selected participate study. sequence V

Язык: Английский

Процитировано

0

Research trends and hotspots of intratumor microbiome: A comprehensive visualization and bibliometric study from 2012 to 2024 DOI Creative Commons

Chaoyue Xiao,

Feng Xiang,

Tiantian Zhao

и другие.

Chinese Medical Journal, Год журнала: 2024, Номер unknown

Опубликована: Дек. 10, 2024

To the Editor: As early as in mid-19th century, microbiologists first recognized multiple microorganisms within human tumors. Nevertheless, perceptions of intratumor microbiome have made little progression during 50 years 20th century owing to contamination interference, experimental irreproducibility, and technical limitations. Strikingly, past decade, advances detection techniques analytical tools been opening unprecedented opportunities widely investigate manifold characteristics low-biomass host–microbe interplays. In second decade 21st researchers focusing on gradually emerged. Initially, this adventurous perspective failed draw much attention because tumors were still considered sterile mainstream belief at that time. realized significant role tumor biology, immunity, metabolism a non-negligent new component microenvironments (TME), soon became hot. Gradually, microbiomes emerged diagnostic prognostic biomarkers, even strenuous endeavors devoted tapping their potential therapeutic targets.[1–5] Yet, it remains left translate microbes-based tumor-specific therapies into clinical practice. Therefore, there is great significance delineating research status evolution trend microbiome. We conducted bibliometric analysis 487 related publications extracted from Web Science Core Collection inception April 11, 2024 [Supplementary Methods Supplementary Figures 1 2, https://links.lww.com/CM9/C186], mapping current landscape hope proffering fresh clues for future research. There blowout annual publications, predictive annual/cumulative are 221 614, respectively, Figure 3, https://links.lww.com/CM9/C186]. Fifty-six countries published documents, wherein less than 20% them contributed more 10 4A Table 1, Most cooperation confined Europe, North America, handful Asian countries/institutions 4B–E, China has leading producer 7 out top productive institutions also held by China. But United States continued dominate field global center with overwhelming citations. This partially recently cut striking figure 4C, E, A total 3505 authors provided 84.9% single publication 5A, Only 489 co-authorship relationships 5B, C, Just Ravid Straussman Jennifer Wargo concurrently among prolific cited Deborah Nejman endowed higher citations H-index but does not possess reflecting his stringent quality control over publications. most co-cited author 5D, The come prominence last couple except distributed discontinuously 2018 2023 5E, Included sourced 232 journals, 14 journals judged core 6A, highest albeit only two Cell possesses link strength despite five whereas Cancers 6B classified 4 clusters 6C, Citing chiefly Molecular/Biology/Immunology Medicine/Medical/Clinical, called frontiers; Molecular/Biology/Genetics, knowledge base 6D, Thirteen documents ranked 20 local citation score (LCS) (GCS) 4, These incipient high LCS proffer theoretical basis subsequent exhaustive study biological functions. 7A, https://links.lww.com/CM9/C186 portrays relationships, while 7B, demonstrates document's impact field. 7C, further shows relationship LCS. 8A, depicts reference co-citation network, forming thorough examinations 8B, highly references since 2015, many continue be 8C 5, hotspots already shifted initial topics (e.g., #12, #17, #21, #23), #0 pancreatic cancer, #1 electroporation, #2 engineered bacteria, #5 microbiome-based therapy, etc., represent hotspots. Especially, therapy including bacteria generated one or years. burst can traced back Grivennikov SI, 2012, Nature, latest took place 2021, attributed Li S, 2017, Microbiome 8D, Notably, Geller LT, experienced strongest burst. Keyword frequency examined word clouds heatmap 9A–C 6, generally evincing emphasis. relatively homogeneous before principally prostate cancer gender; nevertheless, suddenly surged 2021 9D, Specifically, emergence some keywords top-left corner diagnosis, prognosis, biomarker, TME) gained 2 years, discernible shift orientation endeavors, diagnosis prognosis intense interests. Similarly, metastasis, metabolism, immune microenvironment, evolved salient 9E, gut microbiome, enduring recent Colorectal dysbiosis, 16s rRNA belong Motor Themes, denoting they themes maturity 9F, Whereas metastasis belongs Niche indicating well-developed banal. Conversely, Basic demonstrating enough, therefore may become trends. above prefigures trajectories, encompassing therapy. Below, we will elucidate far-reaching meaning realm implications directions. Correlation between microbiome: Gut could main origin directly invade gastrointestinal tissues via impaired mucosa, translocate non-mucosal organs, such pancreas through ducts. Furthermore, given cells immunocytes, transported form fractions intact cell migration. conjectures must validated holistic metagenomic sequencing genetic identification. Apart direct association microbial translocation, remote communication mediates latent connection. indirectly affect TME metabolites system, culminating altering modulate microbiome? Further warranted interplay its effects TME. Tumor immunomodulation: Intratumor reshapes microenvironment (TIME) modulating pro-tumoral antitumor immunity. microecology facilitates recruitment activation counteracts Meanwhile, augments immunity focus activation, exerts inhibitory immunocytes. Although exact mechanisms multitudinous immunomodulation yet elucidated, underlying include (1) valid presentation antigens, especially antigens mimicry shared antigens; (2) microbe-induced immunogenic death; (3) microbe-derived metabolites, (4) pattern recognition receptor-mediated adjuvanticity. Collectively, target supporting immunotherapy, context-dependent require clarification prior translation. It topic facing grand challenges deserves exploration. Metabolic regulation: reprograms convoluted 7, play double-edged sword TIME non-negligible mediators interactions. complicated impacts depend several factors, type, stage, host genotype, specific metabolite, which necessitates study. Targeting metabolic regulation should monumental subject research, comprehensive perception microbe enlighten strategies. Diagnosis prognosis: associated clinicopathological features age, gender, subtypes, histological grade), valuable indicator subtype stratification, staging classification. abundance responses outcomes, promising tool prognosis. Given invasiveness difficulty obtaining tissue samples, accumulating studies typically utilize alternative sputum bronchoalveolar lavage fluid. tumor-associated circulating DNA, biomarker liquid biopsy, Additionally, combining multiple-omics data other emerging sampling techniques, ingestible capsules sampling, favor precise Cancer therapy: multidimensional plays roles determining response antineoplastic therapies. Consequently, targeting adjuvant strategies following points: eliminating detrimental carcinogenic species; fostering beneficial microbiome; metabolite-based intervention reprogram TIME; ameliorate chemotherapy, radiotherapy; (5) microbe-inspired drug delivery. particular, technological development reformed design presents preferential tumors, aggressive penetration, easy recognition, controllable cytotoxicity. genetically release products trigger reactions handicapping function hitchhiking targeted delivery immunostimulators, toxins, drugs. somewhat challenging determine optimal dose dosing schedule live bacterial substances, administration substances risk life-threatening infections sepsis. combine conventional therapies, ideas upgrade efficacy. traditional Chinese medicine successfully applied few report about approach provides experience speculate triangular interaction medicine, microbiota, inevitable limitations Other database-derived non-English omitted. presented temporal limitation. bibliometrics constricted metadata rather full-text analysis. these would alter findings. Overall, visualization explore frontiers According systematical analysis, endows additional multivariate divergent an attractive target. depict microbiome-mediated molecular networks environment. Perhaps eventual destination Funding work was supported National Natural Foundation (No. 82150006), Society Clinical Oncology Research (Nos. Y-HR2017-117, Y-HH202102-0060), Beijing Medical Health YWJKJJHKYJJ-F3046D), Qujiang District Quzhou City Life Oasis Public Service Center BJHA-CRP-040), Wu Jieping 320.6750.2023-05-10) Yawen Gao. Conflicts interest None.

Язык: Английский

Процитировано

0