Genomic signatures of inbreeding and mutation load in tree ferns DOI

Huiqin Yi,

Jing Wang, Shi‐Yong Dong

и другие.

The Plant Journal, Год журнала: 2024, Номер 120(4), С. 1522 - 1535

Опубликована: Окт. 10, 2024

SUMMARY Ferns (Pteridophyta), as the second largest group of vascular plants, play important roles in ecosystem functioning. Homosporous ferns exhibit a remarkable range mating systems, from extreme inbreeding to obligate outcrossing, which may have significant evolutionary and ecological implications. Despite their significance, impact genome‐wide on genetic diversity mutation load within fern lineage remain largely unexplored. In this study, we utilized whole‐genome sequencing investigate genomic signatures three Alsophila tree species. Our analysis revealed extremely high A. spinulosa , contrast predominantly outcrossing observed costularis latebrosa . This difference likely reflects divergent systems demographic histories. Consistent with its propensity, exhibits reduced pronounced decline effective population size. Comparison an overall reduction deleterious mutations highly inbred highlighting that long‐term contributed purging strongly mutations, thereby prolonging survival this, however, carries substantive realized potentially instigate future fitness decline. findings illuminate complex interplay between homosporous ferns, yielding insights implications for conservation management these

Язык: Английский

Population Genetics Provides Insights Into the Impact of Future Climate Change on the Genetic Structure and Distribution of Asian Warty Newts (Genus Paramesotriton) DOI Creative Commons
Dung Van Tran, Tomoya Suzuki, Ibuki Fukuyama

и другие.

Ecology and Evolution, Год журнала: 2025, Номер 15(4)

Опубликована: Апрель 1, 2025

ABSTRACT Assessing population vulnerability to climate change is essential for informing management and conservation strategies, particularly amphibians. We integrated genetics ecological niche modeling (ENM) assess the effect of on distribution genetic structure two species Asian warty newts ( Paramesotriton deloustali P. guangxiensis ) in northern Vietnam. analyzed using a genome‐wide SNP dataset generated with MIG‐seq method. Additionally, we applied ensemble predict potential under scenarios (SSP2‐4.5 SSP5‐8.5) periods 2050 2090. Population revealed three primary groups: West, East + Cao Bang (CB), Quang Ninh (QN). CB exhibited discordance between mitochondrial DNA single‐nucleotide nuclear polymorphism data. Furthermore, gene flow within populations was restricted, West QN. Spatial analyses clusters conditioned by environmental variables predicted that cluster would expand, whereas those QN decrease. The introgression structures probably reduces change. ENM analysis these are susceptible change, resulting reduction their suitable habitat areas across all scenarios. also observed shift toward higher elevations. Our results suggest mountainous Vietnam could serve as refugia effects intensify.

Язык: Английский

Процитировано

0

Genomic signatures of inbreeding and mutation load in tree ferns DOI

Huiqin Yi,

Jing Wang, Shi‐Yong Dong

и другие.

The Plant Journal, Год журнала: 2024, Номер 120(4), С. 1522 - 1535

Опубликована: Окт. 10, 2024

SUMMARY Ferns (Pteridophyta), as the second largest group of vascular plants, play important roles in ecosystem functioning. Homosporous ferns exhibit a remarkable range mating systems, from extreme inbreeding to obligate outcrossing, which may have significant evolutionary and ecological implications. Despite their significance, impact genome‐wide on genetic diversity mutation load within fern lineage remain largely unexplored. In this study, we utilized whole‐genome sequencing investigate genomic signatures three Alsophila tree species. Our analysis revealed extremely high A. spinulosa , contrast predominantly outcrossing observed costularis latebrosa . This difference likely reflects divergent systems demographic histories. Consistent with its propensity, exhibits reduced pronounced decline effective population size. Comparison an overall reduction deleterious mutations highly inbred highlighting that long‐term contributed purging strongly mutations, thereby prolonging survival this, however, carries substantive realized potentially instigate future fitness decline. findings illuminate complex interplay between homosporous ferns, yielding insights implications for conservation management these

Язык: Английский

Процитировано

1