Abstract
Estimating
the
size
of
animal
populations
plays
an
important
role
in
evidence‐based
conservation
and
management.
Some
methods
for
estimating
population
rely
on
animals
being
individually
identifiable.
Traditionally,
this
has
been
done
by
marking
physically
captured
animals,
but
increasingly,
with
distinctive
natural
markings
are
surveyed
noninvasively
using
cameras.
Animal
reidentification
from
photographs
is
usually
manually,
which
expensive,
laborious,
requires
considerable
skill.
An
alternative
to
develop
computer
vision
that
can
support
or
replace
manual
identification
task.
We
developed
automated
approach
deep
learning
identify
whether
a
pair
same
individual
not.
The
core
similarity
network
uses
paired
convolutional
neural
networks
triplet
loss
function
summarize
image
pairs
decide
they
individual.
Prior
main
matching
step,
two
additional
perform
segmentation,
cropping
object
within
image,
orientation
prediction,
deciding
side
was
photographed.
applied
four
species,
images
often
spanning
several
years:
systematic
surveys
bottlenose
dolphins
(
Tursiops
truncatus
,
2008–2019)
harbor
seals
Phoca
vitulina
2015–2019),
citizen
science
dataset
western
leopard
toads
Sclerophrys
pantherina
unknown
dates),
publicly
available
repository
humpback
whale
Megaptera
novaeangliae
dates).
For
these
our
best‐performing
models
were
able
different
individuals
95.8%,
94.6%,
88.2%,
83.8%
cases,
respectively.
found
functions
outperformed
binary
cross‐entropy
data
augmentation
curation
training
provided
small
consistent
improvements
performance.
These
results
demonstrate
potential
or,
more
likely,
facilitate
efforts.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Окт. 17, 2024
Abstract
Translocations
are
central
to
large
carnivore
restoration
efforts,
but
inadequate
monitoring
often
inhibits
effective
conservation
decision-making.
Extinctions,
reintroductions,
poaching
and
high
inbreeding
levels
of
the
Central
European
populations
Eurasian
lynx
(
Lynx
)
typify
challenges
in
Anthropocene.
Recently,
several
efforts
were
initiated
improve
genetic
demographic
status,
met
with
variable
success.
Here,
we
report
on
a
successful,
stakeholder-engaged
translocation
effort
reinforce
highly-inbred
Dinaric
population
create
new
stepping-stone
subpopulation
Southeastern
Alps.
We
used
multidisciplinary
internationally-coordinated
using
systematic
camera-
trapping,
non-invasive
sampling,
GPS-tracking
translocated
remnant
individuals,
recording
reproductive
events
interspecific
interactions,
as
well
simultaneous
tracking
public
stakeholders’
support
before,
during
after
process
across
three
countries.
Among
22
wild-caught
Carpathian
lynx,
68%
successfully
integrated
into
local
ecosystems
at
least
59%
reproduced.
Probability
dispersing
from
release
areas
was
3-times
lower
when
soft-release
rather
than
hard-release
method
used.
Translocated
individuals
had
natural
mortality,
higher
success
similar
ungulate
kill
rates
compared
lynx.
Cooperation
hunters
protected
area
managers
enabled
us
conduct
multi-year
camera-trapping
12,000-km
2
transboundary
area.
Results
indicate
reversal
decline,
abundance
increased
for
>40%
4-year
period.
Effective
decreased
0.32
0.08-0.19,
suggesting
2-
4-fold
increase
fitness.
Furthermore,
successful
establishment
represents
an
important
step
towards
restoring
metapopulation.
Robust
partnerships
communities
coupled
transparent
communication
helped
maintain
stakeholder
throughout
process.
Lessons
learned
about
importance
involvement
conducted
countries
provide
example
further
restore
carnivores
human-dominated
ecosystems.
ABSTRACT
Effective
monitoring
of
threatened
species
is
key
to
identifying
trends
in
populations
and
informing
conservation
management
decisions.
However,
clearly
defined
questions
that
are
informed
by
local
circumstances
traits
commonly
neglected.
We
propose
a
decision
framework
as
guide
prioritise
what
data
collect
methods
use
for
population
monitoring.
applied
our
trial
Gang‐gang
Cockatoos
(
Callocephalon
fimbriatum
),
threatened,
iconic
Southeast
Australia.
To
meet
program
objectives,
we
trailed
distance
sampling
surveys
estimate
abundance
across
the
urban
landscape
Australian
Capital
Territory.
Despite
consistently
high
reporting
rates
study
area,
detection
were
too
low
Cockatoos.
As
part
assessing
appropriateness
an
approach,
simulated
under
hypothetically
inflated
survey
effort
size.
Simulations
show
even
if
field
was
doubled
or
size
improbably
high,
detections
would
remain
be
practical
approach.
then
revisit
make
new
recommendations
future
demonstrate
importance
clear
when
evaluating
how
best
achieve
goals
context
methodological
uncertainty.
The
first
steps
designing
implementing
crucial—our
offers
practitioners
clear,
reasoned
approach
deciding
which
needed
address
their
along
with
contingencies
plans
go
awry.
Ecological Applications,
Год журнала:
2025,
Номер
35(3)
Опубликована: Апрель 1, 2025
Abstract
Translocations
are
central
to
large
carnivore
restoration
efforts,
but
inadequate
monitoring
often
inhibits
effective
conservation
decision‐making.
Extinctions,
reintroductions,
illegal
killings,
and
high
inbreeding
levels
of
the
Central
European
populations
Eurasian
lynx
(
Lynx
)
typify
challenges
in
Anthropocene.
Recently,
several
efforts
were
initiated
improve
genetic
demographic
status
met
with
variable
success.
Here,
we
report
on
successful,
stakeholder‐engaged
translocation
across
three
countries
aimed
to:
(1)
reinforce
Dinaric
population
that
was
suffering
from
(2)
create
a
new
stepping‐stone
subpopulation
neighboring
Southeastern
Alps
help
connect
Alpine
populations.
To
evaluate
success
these
used
multidisciplinary
internationally
coordinated
using
systematic
camera
trapping,
non‐invasive
sampling,
GPS
tracking,
recording
reproductive
events
interspecific
interactions,
as
well
simultaneous
tracking
public
stakeholders'
support
before,
during,
after
translocations.
Among
22
translocated
wild‐caught
Carpathian
lynx,
68%
successfully
integrated
into
local
ecosystems,
at
least
59%
reproduced.
The
probability
dispersing
release
areas
times
lower
soft‐release
method
than
hard‐release
method.
Translocated
individuals
had
substantially
natural
mortality
higher
success,
while
their
ecological
impact
similar
compared
remnant
population.
Cooperation
hunters
protected
area
managers
enabled
us
conduct
multi‐year
camera‐trapping
12,000‐km
2
transboundary
area.
Results
indicate
reversal
decline,
abundance
increased
for
>40%
during
4‐year
period.
Effective
decreased
0.32
0.08–0.19,
suggesting
twofold
fourfold
increase
fitness.
Furthermore,
successful
establishment
represents
an
important
step
toward
restoring
metapopulation.
Robust
partnerships
communities
hunters,
coupled
transparent
communication,
helped
maintain
stakeholder
throughout
efforts.
Lessons
learned
about
importance
involvement
conducted
provide
example
further
restore
carnivores
human‐dominated
ecosystems.
Ecological Modelling,
Год журнала:
2023,
Номер
479, С. 110324 - 110324
Опубликована: Фев. 24, 2023
Spatial
capture-recapture
(SCR)
models
are
now
widely
used
for
estimating
density
from
repeated
individual
spatial
encounters.
SCR
accounts
the
inherent
autocorrelation
in
detections
by
modelling
detection
probabilities
as
a
function
of
distance
between
detectors
and
activity
centres.
However,
additional
heterogeneity
probability
may
still
creep
due
to
environmental
or
sampling
characteristics.
if
unaccounted
for,
such
variation
can
lead
pronounced
bias
population
size
estimates.
In
this
paper,
we
address
issue
describing
three
Bayesian
that
use
generalized
linear
mixed
(GLMM)
approach
account
latent
baseline
across
with:
independent
random
effects
(RE),
spatially
autocorrelated
(SARE)
with
components
prior
covariance
matrix
modelled
decreasing
inter-detector
distance,
two-group
finite
mixture
model
(FM)
identify
detectability
classes
each
detector.
We
test
these
using
simulation
study
an
empirical
application
non-invasive
genetic
monitoring
data
set
female
brown
bears
(Ursus
arctos)
central
Sweden.
study,
all
largely
succeeded
mitigating
biasing
effect
heterogeneous
on
Overall,
SARE
provided
least
biased
estimates
(median
RB:
-9%
–
6%).
When
was
high,
also
performed
best
at
predicting
pattern
probability.
At
intermediate
levels
autocorrelation,
spatially-explicit
obtained
FM
were
more
accurate
than
those
generated
RE.
The
example
revealed
patterns
consistent
results
study.
found
ignoring
led
22%
lower
estimate
bear
compared
accounted
it
(i.e.,
RE
models).
number
per
detector
is
low
(≤1),
GLMMs
considered
here
require
dimension
reduction
pooling
parameters
neighbouring
("aggregation")
avoid
over-parameterization.
added
complexity
computational
overhead
associated
SCR-GLMMs
only
be
justified
extreme
cases
heterogeneity,
e.g.,
large
clusters
inactive
unbeknownst
investigator.
even
less
cases,
detecting
assist
planning
adjusting
schemes.
Scientific Reports,
Год журнала:
2023,
Номер
13(1)
Опубликована: Март 20, 2023
Forests
in
Europe
are
exposed
to
increasingly
frequent
and
severe
disturbances.
The
resulting
changes
the
structure
composition
of
forests
can
have
profound
consequences
for
wildlife
inhabiting
them.
Moreover,
populations
often
subjected
differential
management
regimes
as
they
regularly
extend
across
multiple
national
administrative
borders.
red
deer
Cervus
elaphus
population
Bohemian
Forest
Ecosystem,
straddling
Czech-German
border,
has
experienced
forest
disturbances,
primarily
caused
by
windfalls
bark
beetle
Ips
typographus
outbreaks
during
past
decades.
To
adapt
local
strategies
changing
environmental
conditions
coordinate
them
international
reliable
estimates
density
abundance
highly
sought-after
policymakers,
managers,
stakeholders.
Covering
a
1081-km2
study
area,
we
conducted
transnational
non-invasive
DNA
sampling
2018
that
yielded
1578
genotyped
samples
from
1120
individual
deer.
Using
spatial
capture-recapture
models,
estimated
total
jurisdiction-specific
throughout
ecosystem
quantified
role
disturbance
shaping
heterogeneity
density.
We
hypothesised
(a)
disturbances
provide
favourable
habitat
(e.g.,
forage
cover),
(b)
contrasting
different
jurisdictions
create
risk
landscape,
ultimately
distributions.
Overall,
2851
(95%
Credible
Interval
=
2609-3119)
resided
area
period,
with
relatively
even
overall
sex
ratio
(1406
females,
95%
CI
1229-1612
1445
males,
1288-1626).
average
was
higher
Czechia
(3.5
km-2,
1.2-12.3)
compared
Germany
(2
0.2-11).
effect
on
context-dependent.
had
positive
at
elevations
negative
lower
elevations,
which
could
be
explained
partial
migration
its
drivers
this
population.
Density
generally
units
where
hunting
is
prohibited.
In
addition,
found
ratios
differed
between
were
more
balanced
non-intervention
zones.
Our
results
show
wild
ungulates
modulated
additional
factors,
such
elevation
ungulate
practices.
Overall
patterns
suggested
strong
gradients
units.
With
climate
change
increasing
severity
frequency
population-level
monitoring
becoming
important,
especially
wide-ranging
species
both
global
transcend
boundaries.
Peer Community Journal,
Год журнала:
2022,
Номер
2
Опубликована: Ноя. 21, 2022
Estimating
the
size
of
small
populations
large
mammals
can
be
achieved
via
censuses,
or
complete
counts,
recognizable
individuals
detected
over
a
time
period:
minimum
(population)
(MDS).
However,
as
population
grows
larger
and
its
spatial
distribution
expands,
risk
under-estimating
using
MDS
rapidly
increases
because
assumption
perfect
detection
all
in
is
violated.
The
need
to
report
uncertainty
around
estimates
consequently
becomes
crucial.
We
explored
these
biases
monitoring
framework
critically
endangered
Pyrenean
brown
bear
that
was
close
extinction
mid-1990s,
with
only
five
remaining,
but
subsequently
bolstered
by
introduction
11
bears
from
Slovenia.
Each
year
since
1996,
abundance
has
been
assessed
retained
(MRS),
which
corresponded
reassessment
light
new
information
collected
subsequent
years
(e.g.,
adding
were
not
previous
current
year).
used
Pollock's
closed
robust
design
(PCRD)
capture-recapture
models
applied
cross-border
non-invasive
sampling
data
France,
Spain
Andorra
provide
first
published
annual
temporal
trend
2008.
Annual
increased
fivefold
between
2008
2020,
going
13
66
individuals.
PCRD
globally
MRS
counts
had
reasonably
narrow
associated
95%
Credibility
Intervals.
Even
cases
where
effort
compared
size,
diverge
counts.
individual
heterogeneity
might
stem
intraspecific
home
range
variation
result
move
most
being
likely
detected.
also
found
cubs
higher
mortality
rate
than
adults
subadults,
infanticide
males,
predation,
maternal
death,
abandonment.
Overall,
modelling
approach
provides
demographic
rates
population,
together
uncertainty,
while
minimizing
bias
due
inter-individual
probabilities.
strongly
encourage
wildlife
ecologists
managers
use
approaches
when
researching
mammal
populations.
Such
vital
for
informing
management
decision-making
assessing
conservation
status.
Mammalian Biology,
Год журнала:
2023,
Номер
104(1), С. 25 - 39
Опубликована: Ноя. 8, 2023
Abstract
In
an
effort
to
ameliorate
the
impacts
of
climate
change,
forest
managers
in
Central
Europe
increasingly
turn
conifer
species
that
produce
higher
yields
and
are
better
adapted
projected
future
climatic
conditions.
Though
small
mammals
important
component
ecosystem,
enriching
native
broadleaf
forests
with
conifers
on
mammal
communities
not
well
understood.
We
conducted
mark–recapture
surveys
ascertain
differences
their
community
structure
among
stands
two
(native
Norway
spruce
Picea
abies
non-native
Douglas
fir
Pseudotsuga
menziesii
)
dominant
region,
European
beech
(
Fagus
sylvatica
).
After
estimating
density
common
species,
yellow-necked
mouse
Apodemus
flavicollis
bank
vole
Clethrionomys
glareolus
,
we
found
population
each
is
positively
related
proportion
negatively
stand,
though
these
effects
stand
composition
smaller
than
positive
effect
herb
cover.
Increasing
reduced
monthly
survival
mammals,
while
had
a
survival.
conclude
have
similar
density,
overall
was
significantly
lower
plots
spruce.
This
suggests
increasing
at
expense
may
be
possible
without
changing
local
patterns
but
further
research
necessary
elucidate
exact
demography
behavior.
Ecology and Evolution,
Год журнала:
2023,
Номер
13(11)
Опубликована: Ноя. 1, 2023
The
Eurasian
lynx
is
a
large
carnivore
widely
distributed
across
Eurasia.
However,
our
understanding
of
population
status
heterogeneous
their
range,
with
some
populations
isolated
that
are
at
risk
reduced
genetic
variation
and
complete
lack
information
about
others.
In
many
European
countries,
monitored
through
demographic
studies
crucial
for
conservation
management.
Even
so,
there
only
rough
fragmented
assessments
from
Ukraine
Belarus,
despite
strict
protection
in
both
countries
importance
connectivity
Europe.
We
October
2020
to
March
2021
used
camera
trapping
combination
spatial
capture-recapture
(SCR)
methods
Bayesian
framework
provide
the
first
SCR
density
estimation
three
including
Ukrainian
Chornobyl
Exclusion
Zone,
southern
Belarus
Carpathians.
Our
estimates
varied
within
study
areas
ranging
0.45
1.54
individuals/100
km
Methods in Ecology and Evolution,
Год журнала:
2024,
Номер
15(9), С. 1653 - 1666
Опубликована: Июль 15, 2024
Abstract
Spatial
capture‐recapture
(SCR)
models
provide
estimates
of
animal
density
from
spatially
referenced
encounter
data
and
has
become
the
most
widely
adopted
approach
for
estimating
density.
Despite
rapid
growth
in
development
application
spatial
methods,
approaches
assessing
model
fit
have
received
very
little
attention
when
compared
to
other
classes
hierarchical
ecology.
Here,
we
develop
an
testing
goodness‐of‐fit
(GoF)
frequentist
SCR
using
Monte
Carlo
simulations.
We
derive
probability
distributions
activity
centres
fitted
model.
From
these,
calculate
expected
encounters
capture
history
based
on
parameter
estimates,
propagating
uncertainty
centre
locations
via
Aggregating
these
test
statistics
result
count
data,
allowing
us
with
Freeman‐Tukey
tests.
These
tests
are
summary
total
each
individual
at
trap
(FT‐ind‐trap),
(FT‐individuals)
(FT‐traps).
assess
ability
GoF
diagnose
lack
under
a
range
assumption
violating
scenarios.
FT‐traps
had
strongest
response
unmodelled
heterogeneity
detection
(power
=
0.53–0.56),
while
FT‐ind‐traps
responses
random
variation
detectability
0.88)
non‐spatial
discrete
0.35).
The
tests,
designed
poor
parameters,
were
insensitive
<0.001).
They
also
demonstrated
low
false
positive
rates
(<0.001)
correct
fitted;
therefore,
it
is
unlikely
that
they
will
indications
fit.
demonstrate
capable
detecting
lack‐of‐fit
present
sub‐model.
When
used
jointly,
combinations
results
able
infer
type
certain
cases.
Our
sampling
methods
may
be
extended
wider
thereby
providing
platform
developing
more
SCR.