Opportunities and challenges for sample preparation and enrichment in mass spectrometry for single‐cell metabolomics DOI Creative Commons
Dirk Wevers, Rawi Ramautar, Charles Clark

и другие.

Electrophoresis, Год журнала: 2023, Номер 44(24), С. 2000 - 2024

Опубликована: Сен. 5, 2023

Abstract Single‐cell heterogeneity in metabolism, drug resistance and disease type poses the need for analytical techniques single‐cell analysis. As metabolome provides closest view of status quo cell, studying at resolution may unravel said heterogeneity. A challenge analysis is that metabolites cannot be amplified, so one needs to deal with picolitre volumes a wide range analyte concentrations. Due high sensitivity resolution, MS preferred metabolomics. Large numbers cells analysed proper statistics; this requires high‐throughput analysis, hence automation workflow. Significant advances (micro)sampling methods, CE ion mobility spectrometry have been made, some which applied analyses. Microfluidics has enabled an cell picking metabolite extraction; image recognition automated identification. Many used data varying from conventional novel combinations advanced chemometric approaches. Steps set making more findable, accessible, interoperable reusable, but significant opportunities improvement remain. Herein, workflows are discussed, recommendations made based on experimental goal.

Язык: Английский

Unveiling novel insights in acute myeloid leukemia through single-cell RNA sequencing DOI Creative Commons
Jianbiao Zhou, Wee Joo Chng

Frontiers in Oncology, Год журнала: 2024, Номер 14

Опубликована: Апрель 22, 2024

Acute myeloid leukemia (AML) is a complex and heterogeneous group of aggressive hematopoietic stem cell disease. The presence diverse functionally distinct populations cells within the same patient’s bone marrow or blood poses significant challenge in diagnosing treating AML. A substantial proportion AML patients demonstrate resistance to induction chemotherapy grim prognosis upon relapse. rapid advance next generation sequencing technologies, such as single-cell RNA-sequencing (scRNA-seq), has revolutionized our understanding pathogenesis by enabling high-resolution interrogation cellular heterogeneity ecosystem, their transcriptional signatures at level. New studies have successfully characterized inextricably intertwined interactions among cells, immune microenvironment contributions development, therapeutic These findings deepened broadened complexity AML, which are difficult detect with bulk RNA-seq. This review encapsulates burgeoning body knowledge generated through scRNA-seq, providing novel insights discoveries it unveiled biology. Furthermore, we discuss potential implications scRNA-seq opportunities, focusing on immunotherapy. Finally, highlight current limitations future direction field.

Язык: Английский

Процитировано

4

A Single‐Cell Metabolic Profiling Characterizes Human Aging via SlipChip‐SERS DOI Creative Commons
Fugang Liu,

Jiaqing Liu,

Yang Luo

и другие.

Advanced Science, Год журнала: 2024, Номер unknown

Опубликована: Сен. 4, 2024

Abstract Metabolic dysregulation is a key driver of cellular senescence, contributing to the progression systemic aging. The heterogeneity senescent cells and their metabolic shifts are complex unexplored. A microfluidic SlipChip integrated with surface‐enhanced Raman spectroscopy (SERS), termed SlipChip‐SERS, developed for single‐cell metabolism analysis. This SlipChip‐SERS enables compartmentalization single cells, parallel delivery saponin nanoparticles release intracellular metabolites realize SERS detection simple slipping operations. Analysis different cancer cell lines using demonstrated its capability sensitive multiplexed profiling individual cells. When applied human primary fibroblasts ages, it identified 12 differential metabolites, spermine validated as potent inducer senescence. Prolonged exposure can induce classic senescence phenotype, such increased senescence‐associated β‐glactosidase activity, elevated expression senescence‐related genes reduced LMNB1 levels. Additionally, senescence‐inducing capacity in HUVECs WRL‐68 confirmed, exogenous treatment accumulation H 2 O . Overall, novel system analysis, revealing potential across multiple types, which may offer new strategies addressing ageing ageing‐related diseases.

Язык: Английский

Процитировано

4

Advances in Sampling and Analytical Techniques for Single‐Cell Metabolomics: Exploring Cellular Heterogeneity DOI

Xinxin Shen,

Fangyuan Zhang, Chunping Tang

и другие.

Rapid Communications in Mass Spectrometry, Год журнала: 2025, Номер 39(13)

Опубликована: Апрель 13, 2025

ABSTRACT Single‐cell metabolomics is an emerging and powerful technology that uncovers intercellular heterogeneity reveals microenvironmental dynamics in both physiological pathological conditions. This enables detailed observations of cellular interactions, providing valuable insights into processes such as aging, immune responses, disease development. Despite significant advances, the need for discussions on sampling analytical methods single‐cell continues to grow, with increasing focus selecting most suitable techniques diverse research objectives. review addresses these challenges by exploring key strategies used metabolomics. We three main approaches: capture isolation specific cell types, precise aspiration individual cells, situ mass spectrometry imaging. These are critically assessed highlight achieving accurate metabolite detection at level across applications.

Язык: Английский

Процитировано

0

From Multi-omics To Personalized Training: The Rise of Enduromics and Resistomics DOI Creative Commons
Kayvan Khoramipour, Sergio Maroto‐Izquierdo, Simone Lista

и другие.

Sports Medicine - Open, Год журнала: 2025, Номер 11(1)

Опубликована: Май 14, 2025

Abstract Because of its positive effects on the cardiovascular, metabolic and neurohormonal systems, as well other aspects systemic physiology, exercise is crucial to overall health. Traditional physiology techniques that rely invasive procedures have limited our understanding molecular changes induced by exercise. This paper distinguishes emerging fields “ enduromics ” resistomics from sportomics. Enduromics concentrate responses endurance resistance training, respectively, in a variety populations, whereas sportomics stresses study alterations athletes competitive or simulated situations. These integrate biological systems with omics technology provide accurate insights into many physiological occur during aerobic anaerobic methods make it possible create individualized training plans maximise health, reduce injury risk improve adherence identifying biomarkers fingerprints. The revolutionary potential for athletic performance public health underscores need more research across all demographics modalities.

Язык: Английский

Процитировано

0

Multimodal techniques and strategies for chemical and metabolic imaging at the single-cell level DOI Creative Commons
Ajay Kesharwani, Vipul Gujrati

Current Opinion in Biotechnology, Год журнала: 2024, Номер 88, С. 103149 - 103149

Опубликована: Май 28, 2024

Single-cell chemical and metabolic imaging technologies provide unprecedented insights into individual cell dynamics, advancing our understanding of cellular processes, molecular interactions, activities. Advances in fluorescence, Raman, optoacoustic (photoacoustic), or mass spectrometry methods have paved the way to characterize metabolites, signaling molecules, other moieties within cells. These modalities can also lead single-cell capabilities by targeting endogenous contrast employing exogenous generation techniques, including agents that target specific structure function. In this review, we present key developments, summarize recent applications interrogation imaging, illustrate their advantages, limitations, outlook.

Язык: Английский

Процитировано

3

Single-cell technology for plant metabolomics DOI
Dibyendu Seth, Ankan Das, Sandip Debnath

и другие.

Elsevier eBooks, Год журнала: 2025, Номер unknown, С. 221 - 246

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

0

Collection of optimizations for untargeted metabolomics analysis of Leishmania promastigotes using gas chromatography-mass spectrometry DOI
Gisele André Baptista Canuto, Fabiane Dörr, Ernani Pinto

и другие.

Talanta, Год журнала: 2025, Номер 287, С. 127603 - 127603

Опубликована: Янв. 20, 2025

Язык: Английский

Процитировано

0

Plant Sample Preparation for Metabolomics, Lipidomics, Ionomics, Fluxomics, and Peptidomics DOI Creative Commons
W.B. Silva, Gabriel Felipe Hispagnol, Emanuel Victor dos Santos Nunes

и другие.

Separations, Год журнала: 2025, Номер 12(2), С. 21 - 21

Опубликована: Янв. 24, 2025

Plant metabolomics, lipidomics, ionomics, fluxomics, and peptidomics are essential approaches for exploring how plants respond to epigenetic, pathological, environmental stimuli through comprehensive chemical profiling. Over the past decades, significant progress has been made in protocols methodologies address challenges sample collection extraction. Despite these advancements, preparation remains intricate, with ongoing debates about most effective strategies. This review emphasizes importance of clear research questions well-designed experiments minimize complexity, save time, enhance reproducibility. It provides an overview key steps fields, including harvesting, drying, extraction, data pre-acquisition major analytical platforms. By discussing best practices common challenges, this aims streamline methods promote more consistent reliable outcomes.

Язык: Английский

Процитировано

0

Applications of Metabolomics and Lipidomics in the Neonatal Intensive Care Unit DOI
Jonathan Reiss, Samson Mataraso, Lindsay F. Holzapfel

и другие.

NeoReviews, Год журнала: 2025, Номер 26(2), С. e100 - e114

Опубликована: Фев. 1, 2025

The metabolome and lipidome comprise the thousands of molecular compounds in an organism. Molecular consist upstream metabolic components intracellular reactions or byproducts cellular pathways. biochemical perturbations are associated with disorders newborns infants. diagnosis inborn errors metabolism has relied on targeted metabolomics for several decades. Newer approaches offer potential to identify novel biomarkers common diseases newborn infant. They may also elucidate predictive diagnostic measures a variety health trajectories. Here, we review relevance highlight challenges opportunities future investigations.

Язык: Английский

Процитировано

0

Metabolomics Approaches in Toxicology DOI
Yvonne S. Lin

Elsevier eBooks, Год журнала: 2025, Номер unknown

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

0