Horizontal gene transfer is predicted to overcome the diversity limit of competing microbial species
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Янв. 27, 2024
Abstract
Natural
microbial
ecosystems
harbor
substantial
diversity
of
competing
species.
Explaining
such
is
challenging,
because
in
classic
theories
it
extremely
infeasible
for
a
large
community
species
to
stably
coexist
homogeneous
environments.
One
important
aspect
mostly
overlooked
these
theories,
however,
that
microbes
commonly
share
genetic
materials
with
their
neighbors
through
horizontal
gene
transfer
(HGT),
which
enables
the
dynamic
change
growth
rates
due
fitness
effects
mobile
elements
(MGEs).
Here,
we
establish
framework
competition
by
accounting
flow
among
microbes.
Combining
theoretical
derivation
and
numerical
simulations,
show
many
conditions
HGT
can
surprisingly
overcome
biodiversity
limit
predicted
model
allow
coexistence
competitors,
enabling
neutrality
In
contrast
static
proposed
previous
maintained
highly
stable
against
random
perturbations
fitness.
Our
work
highlights
importance
considering
when
addressing
fundamental
ecological
questions
world
has
broad
implications
design
engineering
complex
consortia.
Язык: Английский
Revisiting the exclusion principle in epidemiology at the limit of a large competitive advantage
Journal of Theoretical Biology,
Год журнала:
2025,
Номер
600, С. 112045 - 112045
Опубликована: Янв. 21, 2025
Язык: Английский
Coexistence Theory for Microbial Ecology, and Vice Versa
Environmental Microbiology,
Год журнала:
2025,
Номер
27(3)
Опубликована: Март 1, 2025
ABSTRACT
Classical
models
from
theoretical
ecology
are
seeing
increasing
uptake
in
microbial
ecology,
but
there
remains
rich
potential
for
closer
cross‐pollination.
Here
we
explore
opportunities
stronger
integration
of
ecological
theory
into
research
(and
vice
versa)
through
the
lens
so‐called
“modern”
coexistence
theory.
Coexistence
can
be
used
to
disentangle
contributions
different
mechanisms
(e.g.,
resource
partitioning,
environmental
variability)
make
species
coexistence.
We
begin
with
a
short
primer
on
fundamental
concepts
theory,
an
emphasis
relevance
communities.
next
present
systematic
review,
which
highlights
paucity
empirical
applications
systems.
In
light
this
gap,
then
identify
and
discuss
ways
which:
(i)
help
answer
applied
questions
particularly
spatio‐temporally
heterogeneous
environments,
(ii)
experimental
systems
leveraged
validate
advance
Finally,
address
several
unique
often
surmountable
challenges
posed
by
systems,
as
well
some
conceptual
limitations.
Nevertheless,
thoughtful
presents
wealth
advancement
both
ecology.
Язык: Английский
Pioneer generation shapes long-term recovery of coral populations
Research Square (Research Square),
Год журнала:
2025,
Номер
unknown
Опубликована: Май 12, 2025
Abstract
Reef
recovery
following
a
disturbance
largely
depends
on
successful
coral
recruitment
and
the
absence
of
chronic
stressors.
However,
recent
events
show
increasing
homogenization,
with
dominant
species
replacing
high
diversity
that
once
characterized
these
ecosystems.
In
this
study,
we
analysed
nine-year
dataset
(2012–2020)
describing
reef
towards
Pocillopora-dominated
state
in
Taiwan
devastating
typhoon.
Tracking
eight
cohorts,
assessed
growth,
survival
reproduction.
Pocillopora
peaked
during
first
three
years,
but
mortality
surged
fourth
year.
The
initial
generation
had
highest
rates,
while
by
fifth
year,
newly
settled
individuals
failed
to
survive
beyond
two
years.
By
2020,
83%
consisted
corals
from
2012–2016,
38%
originating
alone
(2012).
This
pioneer
was
primary
contributor
growth
reproduction,
emphasizing
reef's
reliance
early
settlers,
leading
an
ageing
community.
While
generations
were
critical
recovery,
their
dominance
may
have
driven
gradual
loss
biodiversity.
Our
findings
highlight
importance
development
underscores
risk
only
few
after
recovery.
Язык: Английский
Metapopulations, the inflationary effect, and consequences for public health
The American Naturalist,
Год журнала:
2024,
Номер
205(3), С. 342 - 359
Опубликована: Ноя. 6, 2024
AbstractThe
metapopulation
concept
offers
significant
explanatory
power
in
ecology
and
evolutionary
biology.
Metapopulations,
a
set
of
spatially
distributed
populations
linked
by
dispersal,
their
community
ecosystem
level
analogs,
metacommunity
meta-ecosystem
models,
tend
to
be
more
stable
regionally
than
locally.
This
fact
is
largely
attributable
the
interplay
spatiotemporal
heterogeneity
dispersal
(the
inflationary
effect).
We
highlight
this
underappreciated
(but
essential)
role
biology,
present
novel
expression
for
quantifying
defining
effect,
provide
mechanistic
interpretation
how
it
arises
impacts
population
growth
abundance.
illustrate
effect
with
examples
from
infectious
disease
dynamics,
including
hypothesis
that
policy
decisions
made
during
COVID-19
pandemic
generated
enhanced
spread
disease.
finish
noting
generates
emergent
processes
at
large
scales
across
many
topics
history
ecology,
as
diverse
natural
enemy-victim
species
coexistence,
conservation
Embracing
complexity
vital
future
research
on
persistence
populations.
Язык: Английский
Partitioning the Impacts of Spatial-Temporal Variation in Demography and Dispersal on Metapopulation Growth Rates
The American Naturalist,
Год журнала:
2024,
Номер
205(2), С. 149 - 169
Опубликована: Окт. 7, 2024
AbstractSpatial-temporal
variation
in
environmental
conditions
is
ubiquitous
nature.
This
simultaneously
impacts
survival,
reproduction,
and
movement
of
individuals
thereby
the
rate
at
which
metapopulations
grow.
Using
tools
stochastic
demography,
metapopulation
growth
decomposed
into
five
components
corresponding
to
temporal,
spatial,
spatial-temporal
fitness
spatial
covariation
dispersal
fitness.
While
temporal
always
reduces
rate,
all
other
sources
can
either
increase
or
reduce
rate.
Increases
occur
by
reducing
generating
a
positive
fitness-density
covariance
where
tend
concentrate
higher-quality
patches.
For
example,
autocorrelations
variability
generate
this
for
less
dispersive
populations
but
decrease
it
highly
(e.g.,
migratory
species).
Negative
have
opposite
effects.
Positive
covariances
between
future
fitness,
on
short
long
timescales,
rates.
These
arise
unexpected
ways.
win-stay,
lose-shift
strategy
negatively
autocorrelated
environments
that
exceed
negative
covariances.
decomposition
provides
way
quantify
relative
importance
fundamental
persistence.
Язык: Английский
Metapopulations, the inflationary effect, and consequences for public health
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Ноя. 2, 2023
Abstract
The
metapopulation
perspective
is
an
important
conceptual
framework
in
ecology
and
evolutionary
ecology.
Metapopulations
are
spatially
distributed
populations
linked
by
dispersal.
Both
models
their
community
ecosystem
level
analogues,
metacommunity
meta-ecosystem
models,
tend
to
be
more
stable
regionally
than
locally
display
enhanced
abundance
because
of
the
interplay
spatiotemporal
heterogeneity
dispersal
(an
effect
that
has
been
called
“inflationary
effect”).
We
highlight
essential
role
biology,
sketch
empirical
demonstrations
inflationary
effect,
provide
a
mechanistic
interpretation
how
arises
impacts
population
growth
abundance.
illustrate
with
examples
from
spread
infectious
disease.
Namely,
failure
recognize
full
possible
effects
likely
COVID-19,
based
on
lack
understanding
emergent
processes
at
large
scales
which
may
hamper
control
eradication
other
diseases.
finish
noting
have
implicitly
played
roles
history
ecology,
ranging
across
subdisciplines
as
diverse
natural
enemy-victim
dynamics,
species
coexistence,
conservation
biology.
Seriously
confronting
complexity
could
push
many
these
forward.
Язык: Английский
Lotka-Volterra predator-prey model with periodically varying carrying capacity
Physical review. E,
Год журнала:
2023,
Номер
107(6)
Опубликована: Июнь 30, 2023
We
study
the
stochastic
spatial
Lotka-Volterra
model
for
predator-prey
interaction
subject
to
a
periodically
varying
carrying
capacity.
The
with
on-site
lattice
occupation
restrictions
(i.e.,
finite
local
capacity)
that
represent
food
resources
prey
population
exhibits
continuous
active-to-absorbing
phase
transition.
active
is
sustained
by
existence
of
spatiotemporal
patterns
in
form
pursuit
and
evasion
waves.
Monte
Carlo
simulations
on
two-dimensional
are
utilized
investigate
effect
seasonal
variations
environment
species
coexistence.
results
our
also
compared
mean-field
analysis
order
specifically
delineate
impact
fluctuations
correlations.
find
parameter
region
predator
coexistence
enlarged
relative
stationary
situation
when
capacity
varies
periodically.
(quasi-)stationary
regime
system
shows
qualitative
agreement
between
approximation.
However,
under
periodic
capacity-switching
environments,
rate
equations
predict
period-doubling
scenarios
washed
out
internal
reaction
noise
model.
Utilizing
visual
representations
dynamical
correlation
functions,
we
how
waves
affected
ensuing
resonance
effects.
Correlation
function
measurements
indicate
time
delay
response
sudden
changes
environment.
Resonance
features
observed
cause
prolonged
persistent
Different
effective
static
environments
explored
extreme
limits
fast
slow
switching.
fast-switching
enables
semiquantitative
description
state.
Язык: Английский
Can competitive effects and responses of alien and native species predict invasion outcomes?
Fundamental Research,
Год журнала:
2024,
Номер
unknown
Опубликована: Май 1, 2024
The
relative
competitive
ability
of
native
and
alien
species,
which
consists
effect
(CE)
response
(CR),
has
often
been
invoked
as
a
key
determinant
invasion
success.
Previous
studies
have
reported
that
an
species
with
high
CE
/or
low
CR
would
successfully
invade
species.
However,
no
yet
empirically
examined
the
hypothesis
or
tested
consistency
outcomes
predicted
by
CE-CR
framework
modern
coexistence
theory
(MCT).
To
fill
this
research
gap,
we
conducted
pairwise
competition
experiment
between
five
quantified
based
on
their
biomass
in
absence
presence
one
competitor,
both
MCT
frameworks.
We
demonstrated
theoretically
frequently
measured
previous
work
are
only
approximations
interspecific
coefficients,
thus
could
not
completely
predict
outcomes.
As
expected,
were
partially
consistent
predictions
framework.
Specifically,
aliens
tended
to
exclude
natives,
while
be
excluded
natives
according
MCT.
In
contrast,
pairs
stable
priority
effects
did
conform
theoretical
expectation.
Despite
defects
framework,
it
can
provide
some
useful
value
predicting
outcomes,
especially
when
intrinsic
growth
rate
intraspecific
coefficients
available.
Our
study
is
first
compare
separately
derived
from
qualitative
(the
framework)
quantitative
methods.
recommend
future
should
adopt
approaches
such
far
possible,
more
comprehensively
understand
biotic
interacting
Язык: Английский