Integrating NLP and LLMs to discover biomarkers and mechanisms in Alzheimer's disease DOI Creative Commons
Jin‐Won Song, Junjie Huang, Richen Liu

и другие.

SLAS TECHNOLOGY, Год журнала: 2025, Номер unknown, С. 100257 - 100257

Опубликована: Фев. 1, 2025

Alzheimer's disease (AD) is a progressive neurological condition characterized by cognitive decline, memory loss, and aberrant behaviour. It affects millions of people globally one the main causes dementia. The neurodegenerative known as AD has intricate, multifaceted mechanisms that make it difficult to comprehend identify in its early stages. Conventional diagnostic techniques frequently fail detect By combining Natural Language Processing (NLP) Large Models (LLMs), this research suggests novel approach for identifying potential biomarkers underlying AD. Clinical data gathered from publicly accessible databases healthcare facilities, including genetic information, neuroimaging scans, medical records. pre-processing unstructured clinical notes involves tokenization profiles are normalized Z-score normalization consistency. Multi-Input Convolutional Neural Networks (MI-CNN) employed efficiently fuse diverse sources, allowing thorough analysis. Key linked identified categorized using Genetic Algorithm combined with Bidirectional Encoder Representations Transformers (BERT) (GenBERT). fine-tuning BERT's hyperparameters optimization approaches, GenBERT enables effective analysis large datasets, such patient histories, data, notes. combination strategy increases feature selection model's capacity minute genomic linguistic patterns suggestive goal integrated provide tools new insights into pathogenesis disease, which could transform methods detecting treating As concerns prediction, model performs better than current techniques, obtaining highest accuracy (98.30%) F1-score (0.97), well greater precision (0.95) recall (0.92). Additionally, demonstrates reliably both positive negative cases sensitivity (98.65%) specificity (99.73%). Overall, offers trustworthy useful tool diagnosis.

Язык: Английский

Updates in Alzheimer's disease: from basic research to diagnosis and therapies DOI Creative Commons

Enjie Liu,

Yao Zhang,

Jian–Zhi Wang

и другие.

Translational Neurodegeneration, Год журнала: 2024, Номер 13(1)

Опубликована: Сен. 4, 2024

Язык: Английский

Процитировано

19

TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies DOI Creative Commons
Mingming Lu, Yadong Zhang, Fengchun Yang

и другие.

Nucleic Acids Research, Год журнала: 2022, Номер 51(D1), С. D1179 - D1187

Опубликована: Сен. 14, 2022

Abstract Transcriptome-wide association studies (TWASs), as a practical and prevalent approach for detecting the associations between genetically regulated genes traits, are now leading to better understanding of complex mechanisms genetic variants in regulating various diseases traits. Despite ever-increasing TWAS outputs, there is still lack databases curating massive public information knowledge. To fill this gap, here we present Atlas (https://ngdc.cncb.ac.cn/twas/), an integrated knowledgebase findings manually curated from extensive literature. In current implementation, collects 401,266 high-quality human gene–trait 200 publications, covering 22,247 257 traits across 135 tissue types. particular, interactive knowledge graph collected constructed together with single nucleotide polymorphism (SNP)–gene build up comprehensive regulatory networks at multi-omics levels. addition, Atlas, user-friendly web interface, efficiently enables users browse, search download all information, relevant research metadata annotation interest. Taken together, great value promoting utility availability results explaining basis well providing new insights health disease research.

Язык: Английский

Процитировано

42

A framework of biomarkers for brain aging: a consensus statement by the Aging Biomarker Consortium DOI Creative Commons
Yujuan Jia, Jun Wang,

Jun-Rong Ren

и другие.

Life Medicine, Год журнала: 2023, Номер 2(3)

Опубликована: Май 6, 2023

China and the world are facing severe population aging an increasing burden of age-related diseases. Aging brain causes major diseases, such as neurodegenerative diseases stroke. Identifying biomarkers for effective assessment establishing a system could facilitate development intervention strategies prevention treatment aging-related Thus, experts from Biomarker Consortium (ABC) have combined latest research results practical experience to recommend form expert consensus, aiming provide basis assessing degree conducting brain-aging-related with ultimate goal improving health elderly individuals in both world.

Язык: Английский

Процитировано

33

A critical appraisal of blood-based biomarkers for Alzheimer’s disease DOI
Simone Lista, Mark Mapstone, Filippo Caraci

и другие.

Ageing Research Reviews, Год журнала: 2024, Номер 96, С. 102290 - 102290

Опубликована: Апрель 1, 2024

Язык: Английский

Процитировано

13

The potential roles of salivary biomarkers in neurodegenerative diseases DOI Creative Commons

Lingling Jiao,

Hui-Lin Dong,

Meng-Meng Liu

и другие.

Neurobiology of Disease, Год журнала: 2024, Номер 193, С. 106442 - 106442

Опубликована: Фев. 19, 2024

Current research efforts on neurodegenerative diseases are focused identifying novel and reliable biomarkers for early diagnosis insight into disease progression. Salivary analysis is gaining increasing interest as a promising source of matrices measuring diseases. Saliva collection offers multiple advantages over the currently detected biofluids it easily accessible, non-invasive, repeatable, allowing timely treatment Here, we review existing findings salivary address potential value in diagnosing diseases, such Alzheimer's disease, Parkinson's Huntington's Amyotrophic lateral sclerosis. Based available research, β-amyloid, tau protein, α-synuclein, DJ-1, Huntington protein saliva profiles display reliability validity

Язык: Английский

Процитировано

11

Proteomics profiling of extracellular vesicle for identification of potential biomarkers in Alzheimer's disease: A comprehensive review DOI
Jinjin Pei, Chella Perumal Palanisamy,

Selvaraj Jayaraman

и другие.

Ageing Research Reviews, Год журнала: 2024, Номер 99, С. 102359 - 102359

Опубликована: Май 29, 2024

Язык: Английский

Процитировано

10

Blood biomarkers for clinical applications in Alzheimer's disease: A narrative review DOI Creative Commons
Huijun Li, Zhe Wang

NeuroMarkers., Год журнала: 2025, Номер 2(2), С. 100078 - 100078

Опубликована: Март 27, 2025

Язык: Английский

Процитировано

2

Colorimetric and surface-enhanced Raman scattering dual-mode magnetic immunosensor for ultrasensitive detection of blood phosphorylated tau in Alzheimer's disease DOI
Liding Zhang,

Kai Cao,

Ying Su

и другие.

Biosensors and Bioelectronics, Год журнала: 2022, Номер 222, С. 114935 - 114935

Опубликована: Ноя. 26, 2022

Язык: Английский

Процитировано

35

Dry Chemistry-Based Bipolar Electrochemiluminescence Immunoassay Device for Point-of-Care Testing of Alzheimer-Associated Neuronal Thread Protein DOI
Yi Liang,

Kaifa Xue,

Yanyang Shi

и другие.

Analytical Chemistry, Год журнала: 2023, Номер 95(6), С. 3434 - 3441

Опубликована: Янв. 31, 2023

In this study, we developed, for the first time, a novel dry chemistry-based bipolar electrochemiluminescence (ECL) immunoassay device point-of-care testing (POCT) of Alzheimer-associated neuronal thread protein (AD7c-NTP), where ECL signals were automatically collected and analyzed after sample buffer solutions manually added onto immunosensor. The proposed contains an automatic analyzer immunosensor fabricated with screen-printed fiber material-based chip three-dimensional (3D)-printed shell. Each pad was premodified certain reagents immunoreaction then assembled to form self-enhanced Ru(II)-poly-l-lysine complex lateral flow make addition coreactants repeated flushing unnecessary. Only are immunosensor, process detection can be completed in about 6 min using analyzer. Under optimized conditions, linear range AD7c-NTP 1 104 pg/mL, limit 0.15 pg/mL. had acceptable selectivity, stability, reproducibility been successfully applied detect levels human urine. addition, accurate duplex apolipoprotein E ε4 gene also validated. It is believed that may candidate future POCT applications.

Язык: Английский

Процитировано

23

Biomarkers associated with the pathogenesis of Alzheimer’s disease DOI Creative Commons
Hui Wang, Mengli Sun, Wenhui Li

и другие.

Frontiers in Cellular Neuroscience, Год журнала: 2023, Номер 17

Опубликована: Дек. 7, 2023

Alzheimer’s disease (AD) is a progressive degenerative neurological illness with insidious onset. Due to the complexity of pathogenesis AD and different pathological changes, clinical phenotypes dementia are diverse, these changes also interact each other. Therefore, it great significance search for biomarkers that can diagnose improve ability monitor course treat disease. The mechanism hypothesis high recognition mainly includes accumulation β-amyloid (Aβ) around neurons hyperphosphorylation tau protein, which results in development neuronal fiber tangles (NFTs) mitochondrial dysfunction. an irreversible disease; currently, there no cure or delay process drugs, lack effective early diagnosis methods. patients, often stages moderate cognitive impairment, will seek medical treatment. Biomarkers help presence absence specific diseases their processes, so screening crucial prevention therapy practice. deposition (A), pathology (T), neurodegeneration/neuronal damage (N), known as AT (N) system, widely validated core humoral markers AD. In this paper, related current research status cerebrospinal fluid (CSF) blood were reviewed. At same time, limitations discussed, future was prospected. addition, contents dysfunction, prion virology intestinal microbiome described, understand many aspects dimensions, evaluate more comprehensively accurately.

Язык: Английский

Процитировано

19