Assessment of environmental factors influencing SARS-CoV-2 in Vietnam's surface water across two years of clinical data
The Science of The Total Environment,
Год журнала:
2024,
Номер
957, С. 177449 - 177449
Опубликована: Ноя. 19, 2024
Wastewater-based
epidemiology
(WBE)
is
an
effective,
non-invasive
method
for
monitoring
the
spread
of
severe
acute
respiratory
syndrome
coronavirus
2
(SARS-CoV-2)
by
tracking
viral
prevalence
in
water.
This
study
aimed
to
investigate
presence
SARS-CoV-2
surface
water
Vietnam
over
two
years.
One-step
quantitative
reverse
transcription
polymerase
chain
reaction
(qRT-PCR)
assays
were
employed
quantify
and
its
variant-specific
mutation
sites
(G339D/E484A)
pepper
mild
mottle
virus
(PMMoV)
from
a
total
315
samples
(105
per
type)
compare
with
reported
Coronavirus
disease
2019
(COVID-19)
cases
environmental
factors.
was
detected
38
%
(40/105),
43
(45/105),
39
(41/105)
Sites
A,
B,
C,
respectively,
concentrations
3.0-5.6
log
Язык: Английский
Wastewater Surveillance of SARS-CoV-2 in Zambia: An Early Warning Tool
Опубликована: Июнь 26, 2024
Wastewater-based
surveillance
has
emerged
as
an
important
method
for
monitoring
SARS-CoV-2.
This
study
investigated
the
presence
of
SARS-CoV-2
in
wastewater
Zambia.
We
conducted
a
longitudinal
Copperbelt
and
Eastern
provinces
Zambia
from
October
2023
to
December
during
which
155
samples
were
collected.
The
subjected
three
different
concentration
methods,
namely
bag-mediated
filtration,
skimmed
milk
flocculation,
polythene
glycol-based
assays.
Molecular
detection
nucleic
acid
was
using
real-time
PCR.
Whole
genome
sequencing
Illumina
COVIDSEQ
assay.
Of
samples,
62
(40%)
tested
positive
these,
13
sequences
sufficient
length
determine
lineages
obtained
two
phylogenetically
analyzed.
Various
Omicron
subvariants
detected
including
BA.5,
XBB.1.45,
BA.2.86,
JN.1.
Some
these
have
been
clinical
cases
Interestingly,
phylogenetic
analysis
positioned
sequence
Province
B.1.1.529
clade,
suggesting
that
earlier
variants
late
2021
could
still
be
circulating
may
not
wholly
replaced
by
newer
subvariants.
stresses
need
integrating
into
mainstream
strategies
circulation
Язык: Английский
The reemergence of measles and the urgent need for uninterrupted genetic surveillance and vaccination
Clinical Microbiology and Infection,
Год журнала:
2024,
Номер
30(10), С. 1215 - 1218
Опубликована: Июль 22, 2024
Язык: Английский
Wastewater Surveillance of SARS-CoV-2 in Zambia: An Early Warning Tool
International Journal of Molecular Sciences,
Год журнала:
2024,
Номер
25(16), С. 8839 - 8839
Опубликована: Авг. 14, 2024
Wastewater-based
surveillance
has
emerged
as
an
important
method
for
monitoring
the
Severe
Acute
Respiratory
Syndrome
Coronavirus
2
(SARS-CoV-2).
This
study
investigated
presence
of
SARS-CoV-2
in
wastewater
Zambia.
We
conducted
a
longitudinal
Copperbelt
and
Eastern
provinces
Zambia
from
October
2023
to
December
during
which
155
samples
were
collected.
The
subjected
three
different
concentration
methods,
namely
bag-mediated
filtration,
skimmed
milk
flocculation,
polythene
glycol-based
assays.
Molecular
detection
nucleic
acid
was
using
real-time
Polymerase
Chain
Reaction
(PCR).
Whole
genome
sequencing
Illumina
COVIDSEQ
assay.
Of
samples,
62
(40%)
tested
positive
SARS-CoV-2.
these,
13
sequences
sufficient
length
determine
lineages
obtained
phylogenetically
analyzed.
Various
Omicron
subvariants
detected
including
BA.5,
XBB.1.45,
BA.2.86,
JN.1.
Some
these
have
been
clinical
cases
Interestingly,
phylogenetic
analysis
positioned
sequence
Province
B.1.1.529
clade,
suggesting
that
earlier
variants
late
2021
could
still
be
circulating
may
not
wholly
replaced
by
newer
subvariants.
stresses
need
integrating
into
mainstream
strategies
circulation
Язык: Английский
The Safe Return of Face-to-Face Teaching in the Post-COVID-19 Era at a University in Southern Italy: Surface Monitoring as an Early Warning System
Applied Sciences,
Год журнала:
2023,
Номер
13(24), С. 13214 - 13214
Опубликована: Дек. 13, 2023
Environmental
monitoring
for
SARS-CoV-2
has
become
a
useful
adjunct
to
clinical
testing
because
it
is
widely
available
and
relatively
inexpensive.
During
the
period
May–December
2022
(spring–summer:
May–September–autumn:
October–December),
we
assessed
presence
viability
of
virus
on
surfaces
in
university
settings
Apulia
region
(Southern
Italy)
after
resumption
face-to-face
teaching
activities
evaluated
surface
as
an
early
warning
system.
The
sampling
plan
provided
selection
75%
types
(e.g.,
student
teacher
desks,
computer,
handrail)
different
materials
(plasticized
wood,
metal,
plastic)
present
environments.
Overall,
5.4%
(all
students’
desks)
resulted
positive
with
RT-PCR
negative
viral
culture.
Greater
contamination
was
found
spring–summer
than
autumn
(χ2
test
Yates
correction
=
7.6003;
p-value
0.006).
Poisson
regression
model
showed
direct
association
between
average
number
COVID-19
cases
among
students
seven
days
following
percentage
swabs
day
(Intercept
5.32498;
β
0.01847;
p
<
0.001).
Our
results
show
that
environmental
SARS-CoV-2,
especially
crowded
such
universities,
could
be
tool
warning,
even
end
emergency.
Язык: Английский