Investigation of bioremediation for glyphosate and its metabolite in soil using arbuscular mycorrhizal GmHsp60 protein: a molecular docking and molecular dynamics simulations approach DOI
Tooba Abdizadeh, Saeid Rezaei, Zahra Emadi‬

и другие.

Journal of Biomolecular Structure and Dynamics, Год журнала: 2024, Номер unknown, С. 1 - 25

Опубликована: Дек. 30, 2024

The widespread use of glyphosate and the high dependence agricultural industry on this herbicide cause environmental pollution pose a threat to living organisms. One appropriate solutions in sustainable agriculture deal with caused by its metabolites is creating symbiotic relationship between plants mycorrhizal fungi. Glomalin-related soil protein key for bioremediation metabolite aminomethyl phosphonic acid soil. This study uses homology modeling, molecular docking, dynamic simulation approaches investigate binding mechanism glomalin-related from arbuscular mycorrhiza (GmHsp60) role removal sequestering common pollutants. GmHsp60 structure was predicted quality generated model assessed. Then, interaction modeled explored docking. Based docking results, has an efficient (-6.03 −5.34 kcal/mol). Glyphosate forms three hydrogen bonds Lys258, Gly262, Glu58 GmHsp60, Gly261, Gly262 GmHsp60. In addition, glyphosate's metabolite's stability confirmed simulations free energy calculations using MM/PBSA analysis. provides molecular-level understanding expression function bioremediation.

Язык: Английский

Dynamics of microbial community and functional genes during bioremediation of PAHs-contaminated soil by two biostimulants DOI
Tao Chen, Yanli Dong,

Wenbiao Huang

и другие.

Biochemical Engineering Journal, Год журнала: 2024, Номер 208, С. 109356 - 109356

Опубликована: Май 11, 2024

Язык: Английский

Процитировано

9

Optimized bacterial consortium-based strategies for bioremediation of PAHs-contaminated soils: insights into microbial communities, and functional responses DOI
Jianli Jia, Ben Zhang, Aoran Li

и другие.

Environmental Research, Год журнала: 2025, Номер unknown, С. 121718 - 121718

Опубликована: Апрель 1, 2025

Язык: Английский

Процитировано

0

Comprehensive Ecotoxicity of the Complex System of Polycyclic Aromatic Hydrocarbon-Contaminated Sites to Wheat (Triticum aestivum L.) During Microbial Remediation DOI Open Access
Xiaoli Du, Wanqing Sun, Xiaolu Liu

и другие.

Sustainability, Год журнала: 2025, Номер 17(9), С. 4127 - 4127

Опубликована: Май 2, 2025

Microbial remediation is an eco-friendly and cost-effective method for treating organic-contaminated soil, essential sustainable land use due to its minimal secondary pollution operational simplicity. However, during the degradation of polycyclic aromatic hydrocarbons (PAHs), formation polar or toxic intermediate metabolites can lead unpredictable ecotoxicological impacts. In this study, we investigated effects microbial soils on wheat seedling growth physiology, evaluated soil ecotoxicity throughout process. The results showed that concentrations benzo[a]anthracene (BaA) benzo[a]pyrene (BaP) decreased by 70.4% 49.9%, respectively, following degradation, with process a second-order kinetic model. Despite reduction in pollutants, toxicity increased from days 10 20, peaked day then gradually decreased, but it remained elevated Increased inhibited seed germination, growth, chlorophyll content, induced oxidative stress, suppressed enzyme activity. Gas chromatography–mass spectrometry (GC-MS) analysis identified as primary contributors enhanced ecotoxicity. Wheat germination potential, plant height, root length, superoxide dismutase (SOD) catalase (CAT) activity roots effectively indicate These parameters facilitate optimization strategies ensure restored functionality long-term ecological sustainability.

Язык: Английский

Процитировано

0

Evaluation of the immobilized enzymes function in soil remediation following polycyclic aromatic hydrocarbon contamination DOI Creative Commons
Babar Hussain,

Hongqing Zhu,

Caifu Xiang

и другие.

Environment International, Год журнала: 2024, Номер 194, С. 109106 - 109106

Опубликована: Окт. 30, 2024

The bioremediation of polycyclic aromatic hydrocarbon (PAHs) from soil utilizing microorganisms, enzymes, microbial consortiums, strains, etc. has attracted a lot interest due to the environmentally friendly, and cost-effective features. Enzymes can efficiently break down PAHs in by hydroxylating benzene ring, breaking C-C bond, catalyze hydroxylation variety ring compounds via single-electron transfer oxidation. However, practical application is limited its instability ease loss function under harsh environmental conditions such as pH, temperature, edaphic stress Therefore, this paper focused on techniques used immobilize enzymes remediate soil. Moreover, previous research not adequately covered topic, despite employment several immobilized aqueous solution cultures other types organic pollutants. Bibliometric analysis further highlighted trends 2000 2023 field growing identified important challenges regarding enzyme stability interaction with matrices. findings indicated that may catalyzed oxidation OH groups rings, generate benzyl radicals (i.e.,

Язык: Английский

Процитировано

2

Remediation of Contaminated Soil by Polycyclic Aromatic Hydrocarbons Using Composting DOI Creative Commons

Apollonia Huei Jhe Lim,

Muhammad Noor Hazwan Jusoh

Deleted Journal, Год журнала: 2024, Номер 1(1), С. 22 - 31

Опубликована: Март 4, 2024

Polycyclic aromatic hydrocarbons (PAHs) were one of the most concerning organic and toxic pollutants in world. Since 20th century, there had been no improvement resolving or reducing discharged released amount PAHs into soil environment. Detecting involved collecting environmental biological samples, extracting using specialized techniques, analyzing them with advanced methods like gas chromatography-mass spectrometer (GC-MS) high performance liquid chromatography (HPLC). This process was crucial for assessing contamination levels, understanding health risks, guiding safety measures. There full replacement existing technology materials that would not release PAHs. Now, pollutant has caused many cases related to impact on environment human health, prompting immediate action resolution. The remediation remove from contaminated conducted composting method. few kinds vermicomposting, which used earthworms decompose soil, in-vessel ran aerobic under a close air space tank, aerated pile implemented an open space. bulking agent same. Actually, these three bioremediation soil. challenges be faced by government, people, research future. Some recommendations have provided face future challenges.

Язык: Английский

Процитировано

1

Should releasing risk of sulfamethoxazole in bound-residual fraction of biochar-soil systems be neglected? DOI

Mingyang Sun,

Xiaoyue Zhang, Jiaping Li

и другие.

Bioresource Technology, Год журнала: 2024, Номер unknown, С. 131921 - 131921

Опубликована: Дек. 1, 2024

Язык: Английский

Процитировано

0

Investigation of bioremediation for glyphosate and its metabolite in soil using arbuscular mycorrhizal GmHsp60 protein: a molecular docking and molecular dynamics simulations approach DOI
Tooba Abdizadeh, Saeid Rezaei, Zahra Emadi‬

и другие.

Journal of Biomolecular Structure and Dynamics, Год журнала: 2024, Номер unknown, С. 1 - 25

Опубликована: Дек. 30, 2024

The widespread use of glyphosate and the high dependence agricultural industry on this herbicide cause environmental pollution pose a threat to living organisms. One appropriate solutions in sustainable agriculture deal with caused by its metabolites is creating symbiotic relationship between plants mycorrhizal fungi. Glomalin-related soil protein key for bioremediation metabolite aminomethyl phosphonic acid soil. This study uses homology modeling, molecular docking, dynamic simulation approaches investigate binding mechanism glomalin-related from arbuscular mycorrhiza (GmHsp60) role removal sequestering common pollutants. GmHsp60 structure was predicted quality generated model assessed. Then, interaction modeled explored docking. Based docking results, has an efficient (-6.03 −5.34 kcal/mol). Glyphosate forms three hydrogen bonds Lys258, Gly262, Glu58 GmHsp60, Gly261, Gly262 GmHsp60. In addition, glyphosate's metabolite's stability confirmed simulations free energy calculations using MM/PBSA analysis. provides molecular-level understanding expression function bioremediation.

Язык: Английский

Процитировано

0