Soft Tissue and Bone Tumor Diagnostics: Harnessing the Power of Molecular Techniques DOI Open Access
Fleur Cordier,

Liesbeth Ferdinande,

Anne Hoorens

и другие.

Genes, Год журнала: 2023, Номер 14(12), С. 2229 - 2229

Опубликована: Дек. 17, 2023

Since the introduction of new molecular techniques, diagnostic landscape soft tissue and bone tumors has expanded greatly over past few years. The use techniques led to identification genetic alterations and, therefore, a better understanding tumorigenesis, tumor detection classification. Furthermore, methylation profiling emerged as classification tool for tumors. Molecular pathology also plays an important role in determination patient prognosis targets that can be used targeted therapy. As result, gained more prominent daily practice surgical pathologist. This review delves into various applied It highlights their applications through analysis five specific cases.

Язык: Английский

Techniques, procedures, and applications in host genetic analysis DOI
Diego A. Bonilla, Carlos A. Orozco, Diego A. Forero

и другие.

Advances in genetics, Год журнала: 2024, Номер unknown, С. 1 - 79

Опубликована: Янв. 1, 2024

Язык: Английский

Процитировано

1

GADPO: Genetic Algorithm based on Dominance for Primer Optimization DOI
Fernando M. Rodríguez-Bejarano, Miguel A. Vega‐Rodríguez, Sergio Santander‐Jiménez

и другие.

Expert Systems with Applications, Год журнала: 2023, Номер 238, С. 122206 - 122206

Опубликована: Окт. 18, 2023

Язык: Английский

Процитировано

3

A Novel Runx2 Splice Site Mutation in Chinese Associated with Cleidocranial Dysplasia DOI
Jing Wang, Qiuying Li, Hongyu Li

и другие.

Опубликована: Янв. 1, 2024

The pathogenic gene in most cleidocranial dysplasia patients has been confirmed to be runt-related transcription factor 2 (RUNX2), which controls mutations specific factors of osteoblasts and an effect on skull ossification suture adhesion. aim this study was explore the rule RUNX2 mutation. We report a rare case splicing site mutation Chinese population with typical cleidocrarial dyaplania symptoms, cranial insufficiency, clavicle, dental anomalies. Peripheral blood from proband her mother extracted for Sanger sequencing. expression level before after verified by digital PCR (dPCR) technology. results revealed classic at fifth base intron 5 initiation sequence (NM001024630.4: C.685+5G>A). rate 53%, did not have secondary RNA structure progenitor predicted change, structural free energy low wild type, stem folded first being relatively stable. After mutation, increased. This finding enriches library disease-related genes individuals.

Язык: Английский

Процитировано

0

An affordable and simple method for DNA extraction from agarose suitable for downstream applications DOI Creative Commons

Jesús Enrique Sánchez-Flores,

Antonio Sandoval-Cabrera, Patricia Alarcón-Valdés

и другие.

Research Square (Research Square), Год журнала: 2024, Номер unknown

Опубликована: Июнь 5, 2024

Abstract DNA serves as the foundation for molecular biology, leading to development of numerous techniques. Often, these techniques necessitate separation and visualization specific regions. Electrophoresis provides a solution this requirement. However, purification from agarose gels presents significant challenge, both in terms complexity cost. Therefore, here we propose protocol that is cost-effective efficient. GFP bands PJet vector were visualized excised extraction using five treatments. Only treatment involving TAE buffer failed, while others partially or fully dissolved gel, aiding recovery. Treatments 2, 4, 5 showed defined without degradation. A nested PCR confirmed suitability recovered further applications, with only treatments 4 being amplified. Two additional samples successfully extracted 1% gel methods 5, demonstrating their effectiveness.

Язык: Английский

Процитировано

0

Potential diagnostic value of circulating miRNAs in HFrEF and bioinformatics analysis DOI Creative Commons
Zheng Kuai, Yuanji Ma, Wei Dong Gao

и другие.

Heliyon, Год журнала: 2024, Номер 10(19), С. e37929 - e37929

Опубликована: Сен. 20, 2024

Язык: Английский

Процитировано

0

A novel RUNX2 splice site mutation in Chinese associated with cleidocranial dysplasia DOI Creative Commons
Jing Wang, Qiuying Li, Hongyu Li

и другие.

Heliyon, Год журнала: 2024, Номер 10(22), С. e40277 - e40277

Опубликована: Ноя. 1, 2024

Pathogenic genes in most patients with cleidocranial dysplasia have been confirmed to be runt-related transcription factor 2 (RUNX2), which controls mutations specific osteoblast factors and affects skull ossification suture adhesion. This study aimed explore the role of RUNX2 mutations. Here, we report a rare case splice site mutation Chinese population typical symptoms, cranial insufficiency, clavicle dysplasia, dental anomalies. Peripheral blood samples from proband her mother were subjected Sanger sequencing. The expression levels before after verified using digital PCR (dPCR). results revealed classic at fifth base intron 5 initiation splicing sequence (NM001024630.4: C.685+5G>A). rate was 53%, while did not any secondary RNA structure gene progenitor predicted change, structural free energy low wild-type, stem folded first being relatively stable. After mutation, increased. finding enriches library CD-related individuals.

Язык: Английский

Процитировано

0

Automation for lateral flow rapid tests: Protocol for an open-source fluid handler and applications to dengue and African swine fever tests DOI Creative Commons
Rohan Laurent,

Benjamin Hinnant,

Michael D. Talbott

и другие.

PLOS Global Public Health, Год журнала: 2024, Номер 4(11), С. e0002625 - e0002625

Опубликована: Ноя. 25, 2024

Lateral flow rapid diagnostic tests (RDTs, RTs) are cost-effective with low infrastructure requirements for limited-resource settings, and in any setting can represent a bridge between early disease monitoring at outbreak onset fully-scaled molecular testing human or animal diseases. However, the potential of RTs to handle higher throughput is hampered by need manual processing. Here we review dengue virus African swine fever tests, present novel protocol that employs an open-source fluid handler automate execution up 42 per run. A publicly accessible website, rtWIZARD.lji.org, provides printouts correctly spacing cassettes, worksheets sample organization, test-specific protocols accurately deliver samples from 48-tube rack each cassette's running buffer wells. An optional QR-coded sheet allows de-identified sample-to-result traceability producing unique printable label cassette, enabling results be entered via scanner. This work describes highly model increasing efficiency RT other applications including workplace testing, food safety, environmental defense applications.

Язык: Английский

Процитировано

0

Development and optimization of diagnostic assays for infectious diseases DOI Creative Commons
Marco Ciotti, Eleonora Nicolai, Massimo Pieri

и другие.

LabMed discovery., Год журнала: 2024, Номер unknown, С. 100032 - 100032

Опубликована: Дек. 1, 2024

Язык: Английский

Процитировано

0

Permeability-Engineered Compartmentation System-Enabled Digital PCR (PECS-dPCR): A Digital Platform toward Multistep Biomolecular Assays DOI
Jie Li, Yanan Du, Qingyuan Shi

и другие.

Analytical Chemistry, Год журнала: 2024, Номер unknown

Опубликована: Дек. 16, 2024

Droplet-based digital PCR has emerged as a powerful platform for nucleic acid-based detection. However, the formation of droplet compartments and subsequent amplification process in oil present significant drawbacks: instability under harsh thermal conditions, high background fluorescent noise inside droplets, major difficulty supporting multistep assays. Alternatively, droplets made hydrogel, or other advanced materials, have been adopted demonstrate promising improvement over conventional droplet-based platforms. In this context, we permeability-engineered compartmentation system-enabled (PECS-dPCR), novel that facilitates biomolecular assays with stability, minimized noise, long-term preservation capability. We achieve compartmentalization by forming core-shell structure using aqueous two-phase system (ATPS). The hydrogel shell provides exceptional mechanical strength stability to these compartments. permeability can be fine-tuned retain larger DNA targets while sieving out smaller ancillary molecules. Therefore, significantly improve signal-to-noise ratio washing background. Furthermore, remain intact solution are able exchange materials ambient environment. This critical feature offers capability execute simple operational settings, enabling demonstration multitarget single-bacteria quantification our platform. further show assay paused samples preserved >2 weeks between different detection steps thanks excellent biochemical offered envision PECS-dPCR becoming versatile multiple-reaction-step assays, offering high-quality signals stability.

Язык: Английский

Процитировано

0

Soft Tissue and Bone Tumor Diagnostics: Harnessing the Power of Molecular Techniques DOI Open Access
Fleur Cordier,

Liesbeth Ferdinande,

Anne Hoorens

и другие.

Genes, Год журнала: 2023, Номер 14(12), С. 2229 - 2229

Опубликована: Дек. 17, 2023

Since the introduction of new molecular techniques, diagnostic landscape soft tissue and bone tumors has expanded greatly over past few years. The use techniques led to identification genetic alterations and, therefore, a better understanding tumorigenesis, tumor detection classification. Furthermore, methylation profiling emerged as classification tool for tumors. Molecular pathology also plays an important role in determination patient prognosis targets that can be used targeted therapy. As result, gained more prominent daily practice surgical pathologist. This review delves into various applied It highlights their applications through analysis five specific cases.

Язык: Английский

Процитировано

0