bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Март 31, 2024
Abstract
Background
Branching
morphogenesis
orchestrates
organogenesis
in
many
tissues
including
kidney,
where
ureteric
bud
branching
determines
kidney
size
and
nephron
number.
Defects
result
congenital
renal
anomalies
which
manifest
as
deviations
size,
function,
number
thus
critically
compromising
the
lifelong
functional
capacity
established
during
development.
Advances
genetic
molecular
understanding
of
regulation
have
proved
insufficient
to
improve
prognosis
defects.
Thus,
we
addressed
mechanisms
regulating
three-dimensional
(3D)
epithelial
cell
morphology
shape
changes
novel
branch
initiation
uncover
contributions
cellular
mechanics
on
functions
tissue
organization
normal
branching-compromised
tips.
Methods
We
explored
behavior
at
all
scales
by
utilizing
a
combination
mouse
genetics
custom
machine-learning
segmentation
pipeline
MATLAB.
Ureteric
shapes
sizes
were
quantified
3D
wholemount
kidneys.
A
with
live
imaging
fluorescently
labelled
UB
cells,
traction
force
microscopy,
primary
cells
used
determine
how
basic
features
niche
biomechanics
contribute
complex
point
determination
process
that
aims
gaining
optimal
growth
density
limited
space.
Results
Machine
learning-based
tip
epithelia
identified
geometrical
round-to-elliptical
transformation
key
change
facilitating
shifts
direction
enable
propitious
complexity.
Cell
analyses
demonstrated
failure
condense
conformation.
Analysis
derived
disrupted
E-CADHERIN
PAXILLIN
mediated
adhesive
forces
defective
cytoskeletal
dynamics
detected
fluorescent
labelling
actin
cells.
Branching-compromised
showed
wrinkled
nuclear
alterations
MYH9-based
microtubule
organization,
suggest
stiff
disturbed
sensing
response
biomechanical
cues.
Conclusions
Our
results
indicate
within
epithelium
towards
composed
progenitors
must
dynamically
fluctuate
allow
complexity
arborization
new
formation.
The
data
collectively
propose
model
crowding
tandem
stretching
transforms
individual
into
elliptical
elongated
shapes.
This
creates
local
curvatures
drive
formation
ampulla-to-asymmetric
ampulla
transition
bud.
Frontiers in Molecular Biosciences,
Год журнала:
2022,
Номер
9
Опубликована: Окт. 3, 2022
The
RAS
-
Extracellular
signal-regulated
kinase
(RAS-ERK)
pathway
plays
a
conserved
role
in
promoting
cell
migration
and
invasion.
Growth
factors,
adhesion,
oncogenes
activate
ERK.
While
historically
studied
with
respect
to
its
control
of
proliferation
differentiation,
the
signaling
pattern
effectors
specific
for
are
now
coming
light.
New
advances
probes
have
revealed
how
steady-state
ERK
activity
fluctuates
within
individual
cells
propagates
neighboring
cells.
We
review
new
findings
on
different
modes
stimulation
an
increased
baseline
level
promotes
single
collective
discuss
drives
actin
polymerization
adhesion
turnover
edge
protrusion
contraction
stimulates
movement
waves
epithelial
sheets.
With
steady
development
biosensors
monitoring
spatial
temporal
activity,
determining
individually
interpret
multiple
vivo
signals
is
reach.
FEBS Open Bio,
Год журнала:
2023,
Номер
13(7), С. 1177 - 1192
Опубликована: Май 9, 2023
The
precise
execution
of
various
cellular
functions
relies
on
the
maintenance
signaling
specificity
from
input
detection
to
outputs.
However,
diverse
pathways
share
similar
or
identical
intermediate
components.
A
well-conserved
intermediate,
Mitogen-Activated
Protein
Kinase
(MAPK)
cascade,
participates
in
a
myriad
pathways,
regulating
signal
transduction
output.
This
typifies
"hourglass
conundrum",
where
multitude
inputs
and
outputs
all
operate
through
limited
number
common
intermediates.
Therefore,
understanding
how
MAPK
cascades
regulate
variety
with
is
fundamental
question
biology.
review
highlights
four
major
insulating
mechanisms
that
improve
specificity:
selective
activation,
compartmentalization,
combinatorial
signaling,
cross-pathway
inhibition.
We
focus
plant
cascade
components
compare
those
animals
yeast.
hope
this
conceptual
overview
will
aid
future
studies
better
understand
specificity.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 1, 2025
Cells
under
high
confinement
form
highly
polarized
hydrostatic
pressure-driven,
stable
leader
blebs
that
enable
efficient
migration
in
low
adhesion,
environments.
Here
we
investigated
the
basis
of
bleb
morphology
metastatic
melanoma
cells
migrating
non-adhesive
confinement.
Using
high-resolution
time-lapse
imaging
and
specific
molecular
perturbations,
found
EGF
signaling
via
PI3K
stabilizes
maintains
a
bleb.
Protein
activity
biosensors
revealed
unique
EGFR/PI3K
gradient
decreasing
from
rear-to-front,
promoting
PIP3
Rac1-GTP
accumulation
at
rear,
with
its
antagonists
PIP2
RhoA-GTP
concentrated
tip,
opposite
to
front-to-rear
organization
these
modules
integrin-mediated
mesenchymal
migration.
Optogenetic
experiments
showed
disrupting
this
caused
retraction,
underscoring
role
stability.
Mathematical
modeling
identified
mechanism
where,
as
initiates,
CD44
ERM
proteins
restrict
EGFR
mobility
membrane-apposed
cortical
actin
meshwork
establishing
rear-to-front
EGFR-PI3K-Rac
gradient.
Thus,
our
study
reveals
biophysical
underpinnings
cell
polarity
bleb-based
confinement,
underscores
how
alternative
spatial
arrangements
can
mediate
different
modes
according
local
microenvironment.
Cell Reports,
Год журнала:
2025,
Номер
44(1), С. 115193 - 115193
Опубликована: Янв. 1, 2025
Epithelial
cells
respond
to
infection
with
the
intracellular
bacterial
pathogen
Listeria
monocytogenes
by
altering
their
mechanics
promote
collective
infected
cell
extrusion
(CICE)
and
limit
spread
across
monolayers.
However,
underlying
biochemical
pathways
remain
elusive.
Here,
using
in
vitro
(epithelial
monolayers)
vivo
(zebrafish
larvae)
models
of
L.
or
Shigella
flexneri,
we
explored
role
extracellular-signal-regulated
kinase
(ERK)
activity
waves
coordinating
mechanical
battle
between
surrounder
uninfected
that
leads
CICE.
We
discovered
when
ERK
are
suppressed,
fail
exhibit
alterations
shape
kinematics
associated
CICE
behave
more
like
quiescent
In
particular,
surrounding
foci
unable
polarize,
reinforce
monolayer
stresses,
Our
findings
reveal
crosstalk
is
key
elimination
large
domains
cells.
Cancers,
Год журнала:
2022,
Номер
14(12), С. 2887 - 2887
Опубликована: Июнь 11, 2022
Despite
advancements
made
in
diagnosis
and
treatment,
prostate
cancer
remains
the
second
most
diagnosed
among
men
worldwide
2020,
first
North
America
Europe.
Patients
with
localized
disease
usually
respond
well
to
first-line
treatments,
however,
up
30%
develop
castration-resistant
(CRPC),
which
is
often
metastatic,
making
this
stage
of
incurable
ultimately
fatal.
Over
last
years,
interest
has
grown
into
extracellular
matrix
(ECM)
stiffening
as
an
important
mediator
diseases,
including
cancers.
While
process
increasingly
well-characterized
breast
cancer,
a
similar
in-depth
look
at
ECM
lacking
for
cancer.
In
review,
we
scrutinize
current
state
literature
regarding
its
potential
association
progression
castration
resistance.
Biochemical Journal,
Год журнала:
2023,
Номер
480(23), С. 1909 - 1928
Опубликована: Дек. 1, 2023
Signaling
by
the
extracellular
signal-regulated
kinase
(ERK)
pathway
controls
many
cellular
processes,
including
cell
division,
death,
and
differentiation.
In
this
second
installment
of
a
two-part
review,
we
address
question
how
ERK
exerts
distinct
context-specific
effects
on
multiple
processes.
We
discuss
dynamics
activity
induce
selective
changes
in
gene
expression
programs,
with
insights
from
both
experiments
computational
models.
With
focus
single-cell
biosensor-based
studies,
summarize
four
major
functional
modes
for
signaling
tissues:
adjusting
size
populations,
gradient-based
patterning,
wave
propagation
morphological
changes,
diversification
states.
These
operation
are
disrupted
cancer
other
related
diseases
represent
potential
targets
therapeutic
intervention.
By
understanding
dynamic
mechanisms
involved
signaling,
there
is
pharmacological
strategies
that
not
only
simply
inhibit
ERK,
but
also
restore
patterns
improve
disease
outcomes.
Current Opinion in Cell Biology,
Год журнала:
2023,
Номер
84, С. 102217 - 102217
Опубликована: Авг. 11, 2023
Extracellular
signal-regulated
kinase
(ERK)
has
been
recognized
as
a
critical
regulator
in
various
physiological
and
pathological
processes.
Extensive
research
elucidated
the
signaling
mechanisms
governing
ERK
activation
via
biochemical
regulations
with
upstream
molecules,
particularly
receptor
tyrosine
kinases
(RTKs).
However,
recent
advances
have
highlighted
role
of
mechanical
forces
activating
RTK–ERK
pathways,
thereby
opening
new
avenues
into
mechanochemical
interplay
multicellular
tissues.
Here,
we
review
force-induced
cells
propose
possible
mechanosensing
underlying
mechanoresponsive
activation.
We
conclude
that
are
not
merely
passive
factors
shaping
tissues
but
also
active
regulators
cellular
pathways
controlling
collective
cell
behaviors.
Cellular and Molecular Life Sciences,
Год журнала:
2023,
Номер
80(12)
Опубликована: Ноя. 10, 2023
The
coupling
between
mechanical
forces
and
modulation
of
cell
signalling
pathways
is
essential
for
tissue
plasticity
their
adaptation
to
changing
environments.
Whilst
the
number
physiological
pathological
relevant
roles
mechanotransduction
has
been
rapidly
expanding
over
last
decade,
studies
have
mostly
focussing
on
a
limited
mechanosensitive
pathways,
which
include
instance
Hippo/YAP/TAZ
pathway,
Wnt/β-catenin
or
stretch-activated
channel
Piezo.
However,
recent
development
spreading
new
live
sensors
provided
insights
into
contribution
ERK
pathway
in
mechanosensing
various
systems,
emerges
now
as
fast
modular
pathway.
In
this
review,
we
will
document
key
vivo
vitro
examples
that
established
clear
link
deformation,
stress
signalling,
comparing
timescale
stress.
We
then
discuss
different
molecular
mechanisms
proposed
so
far,
epistatic
mechanics
discussing
cellular
parameters
affecting
signalling.
finish
by
consequences
mechanics,
outlining
how
interplay
instrumental
self-organisation
long-range
cell-cell
coordination.
iScience,
Год журнала:
2023,
Номер
26(5), С. 106657 - 106657
Опубликована: Апрель 12, 2023
Tissue
boundaries
and
interfaces
are
engines
of
morphogenesis
in
vivo.
However,
despite
a
wealth
micropatterning
approaches
available
to
control
tissue
size,
shape,
mechanical
environment
vitro,
fine-scale
spatial
cell
positioning
within
constructs
remains
an
engineering
challenge.
To
address
this,
we
augment
DNA
"velcro"
technology
for
selective
patterning
ssDNA-labeled
cells
on
mechanically
defined
photoactive
polyacrylamide
hydrogels.
Hydrogels
bearing
photopatterned
single-stranded
(ssDNA)
features
capture
then
co-functionalized
with
extracellular
matrix
(ECM)
proteins
support
subsequent
adhesion
patterned
tissues.
ECM
protein
co-functionalization
does
not
alter
ssDNA
pattern
fidelity,
capture,
or
hydrogel
elastic
stiffness.
This
approach
enables
mechanobiology
studies
measurements
signaling
activity
at
dynamic
precise
initial
patterning.
Combining
velcro
functionalization
provides
independent
placement,
adhesion,
mechanics,
constituting
new
tool
studying
biological
programming
multicellular
interactions
engineered