bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Март 31, 2024
Abstract
Background
Branching
morphogenesis
orchestrates
organogenesis
in
many
tissues
including
kidney,
where
ureteric
bud
branching
determines
kidney
size
and
nephron
number.
Defects
result
congenital
renal
anomalies
which
manifest
as
deviations
size,
function,
number
thus
critically
compromising
the
lifelong
functional
capacity
established
during
development.
Advances
genetic
molecular
understanding
of
regulation
have
proved
insufficient
to
improve
prognosis
defects.
Thus,
we
addressed
mechanisms
regulating
three-dimensional
(3D)
epithelial
cell
morphology
shape
changes
novel
branch
initiation
uncover
contributions
cellular
mechanics
on
functions
tissue
organization
normal
branching-compromised
tips.
Methods
We
explored
behavior
at
all
scales
by
utilizing
a
combination
mouse
genetics
custom
machine-learning
segmentation
pipeline
MATLAB.
Ureteric
shapes
sizes
were
quantified
3D
wholemount
kidneys.
A
with
live
imaging
fluorescently
labelled
UB
cells,
traction
force
microscopy,
primary
cells
used
determine
how
basic
features
niche
biomechanics
contribute
complex
point
determination
process
that
aims
gaining
optimal
growth
density
limited
space.
Results
Machine
learning-based
tip
epithelia
identified
geometrical
round-to-elliptical
transformation
key
change
facilitating
shifts
direction
enable
propitious
complexity.
Cell
analyses
demonstrated
failure
condense
conformation.
Analysis
derived
disrupted
E-CADHERIN
PAXILLIN
mediated
adhesive
forces
defective
cytoskeletal
dynamics
detected
fluorescent
labelling
actin
cells.
Branching-compromised
showed
wrinkled
nuclear
alterations
MYH9-based
microtubule
organization,
suggest
stiff
disturbed
sensing
response
biomechanical
cues.
Conclusions
Our
results
indicate
within
epithelium
towards
composed
progenitors
must
dynamically
fluctuate
allow
complexity
arborization
new
formation.
The
data
collectively
propose
model
crowding
tandem
stretching
transforms
individual
into
elliptical
elongated
shapes.
This
creates
local
curvatures
drive
formation
ampulla-to-asymmetric
ampulla
transition
bud.
Physical Review Research,
Год журнала:
2025,
Номер
7(2)
Опубликована: Июнь 4, 2025
Studies
of
fate
patterning
during
development
typically
emphasize
cell-cell
communication
via
diffusible
chemical
signals.
Recent
experiments
on
stem
cell
colonies,
however,
suggest
that
in
some
cases
mechanical
stresses,
rather
than
secreted
chemicals,
enable
long-ranged
interactions
specify
positional
information
and
pattern
fates.
These
findings
inspire
a
model
patterning:
affects
contractility,
pressure
the
layer
biases
fate.
Cells
at
colony
edge,
more
contractile
cells
center,
seed
propagates
force
transmission.
Strikingly,
our
implies
width
outer
domain
varies
nonmonotonically
with
substrate
stiffness,
prediction
we
confirm
experimentally;
argue
similar
dependence
stiffness
can
be
achieved
by
morphogen
only
if
strong
constraints
signaling
pathway's
mechanobiology
are
met.
Our
thus
support
idea
stress
mediate
complete
absence
morphogens,
even
nonmotile
layers,
expanding
repertoire
possible
roles
for
signals
morphogenesis.
Future
tests
additional
predictions,
like
effect
anisotropic
rigidity,
will
further
broaden
range
achievable
patterns.
Published
American
Physical
Society
2025
International Journal of Molecular Sciences,
Год журнала:
2023,
Номер
24(10), С. 9062 - 9062
Опубликована: Май 21, 2023
Gaining
insight
into
the
in
situ
receptor–ligand
binding
is
pivotal
for
revealing
molecular
mechanisms
underlying
physiological
and
pathological
processes
will
contribute
to
drug
discovery
biomedical
application.
An
important
issue
involved
how
responds
mechanical
stimuli.
This
review
aims
provide
an
overview
of
current
understanding
effect
several
representative
factors,
such
as
tension,
shear
stress,
stretch,
compression,
substrate
stiffness
on
binding,
wherein
implications
are
focused.
In
addition,
we
highlight
importance
synergistic
development
experimental
computational
methods
fully
further
studies
should
focus
coupling
effects
these
factors.
Advanced Healthcare Materials,
Год журнала:
2023,
Номер
13(10)
Опубликована: Ноя. 21, 2023
Epithelial-to-mesenchymal
transition
(EMT)
plays
a
crucial
role
in
metastatic
cancer
progression,
and
current
research,
which
relies
heavily
on
2D
monolayer
cultures,
falls
short
recapitulating
the
complexity
of
3D
tumor
microenvironment.
To
address
this
limitation,
transcriptomic
meta-analysis
is
conducted
diverse
types
undergoing
EMT
cultures.
It
found
that
mechanotransduction
elevated
cultures
further
intensified
during
EMT,
but
not
EMT.
This
analysis
reveals
distinct
gene
signature,
characterized
by
extracellular
matrix
remodeling
coordinated
angiopoietin-like
4
(Angptl4)
along
with
other
canonical
regulators.
Utilizing
hydrogel-based
matrices
adjustable
mechanical
forces,
are
established
at
varying
physiological
stiffness
levels.
A
YAP:EGR-1
mediated
up-regulation
Angptl4
expression
observed,
accompanied
an
upregulation
mesenchymal
markers,
higher
Suppression
using
antisense
oligonucleotides
or
anti-cAngptl4
antibodies
leads
to
dose-dependent
abolishment
EMT-mediated
chemoresistance
self-organization
3D,
ultimately
resulting
diminished
potential
stunted
growth
xenografts.
unique
programmable
simulate
levels
microenvironment
unveil
as
promising
therapeutic
target
inhibit
impede
progression.
Scientific Reports,
Год журнала:
2023,
Номер
13(1)
Опубликована: Июль 25, 2023
Abstract
Alveolar
type
2
epithelial
cells
(AT2s)
derived
from
human
induced
pluripotent
stem
(iAT2s)
have
rapidly
contributed
to
our
understanding
of
AT2
function
and
disease.
However,
while
iAT2s
are
primarily
cultured
in
three-dimensional
(3D)
Matrigel,
a
matrix
cancerous
mouse
tissue,
it
is
unclear
how
physiologically
relevant
will
impact
phenotype.
As
extracellular
(ECM)
recognized
as
vital
component
directing
cellular
differentiation,
we
sought
derive
hydrogels
decellularized
lung
alveolar-enriched
ECM
(aECM)
provide
an
ex
vivo
model
characterize
the
role
on
iAT2
We
demonstrate
aECM
retain
critical
situ
components,
including
structural
basement
membrane
proteins.
While
facilitate
proliferation
alveolosphere
formation,
subset
change
morphology
thin
elongated
ring-like
cells.
This
morphological
correlates
with
upregulation
recently
described
iAT2-derived
transitional
cell
state
genetic
markers.
such,
potentially
underappreciated
differentiation.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Март 31, 2024
Abstract
Background
Branching
morphogenesis
orchestrates
organogenesis
in
many
tissues
including
kidney,
where
ureteric
bud
branching
determines
kidney
size
and
nephron
number.
Defects
result
congenital
renal
anomalies
which
manifest
as
deviations
size,
function,
number
thus
critically
compromising
the
lifelong
functional
capacity
established
during
development.
Advances
genetic
molecular
understanding
of
regulation
have
proved
insufficient
to
improve
prognosis
defects.
Thus,
we
addressed
mechanisms
regulating
three-dimensional
(3D)
epithelial
cell
morphology
shape
changes
novel
branch
initiation
uncover
contributions
cellular
mechanics
on
functions
tissue
organization
normal
branching-compromised
tips.
Methods
We
explored
behavior
at
all
scales
by
utilizing
a
combination
mouse
genetics
custom
machine-learning
segmentation
pipeline
MATLAB.
Ureteric
shapes
sizes
were
quantified
3D
wholemount
kidneys.
A
with
live
imaging
fluorescently
labelled
UB
cells,
traction
force
microscopy,
primary
cells
used
determine
how
basic
features
niche
biomechanics
contribute
complex
point
determination
process
that
aims
gaining
optimal
growth
density
limited
space.
Results
Machine
learning-based
tip
epithelia
identified
geometrical
round-to-elliptical
transformation
key
change
facilitating
shifts
direction
enable
propitious
complexity.
Cell
analyses
demonstrated
failure
condense
conformation.
Analysis
derived
disrupted
E-CADHERIN
PAXILLIN
mediated
adhesive
forces
defective
cytoskeletal
dynamics
detected
fluorescent
labelling
actin
cells.
Branching-compromised
showed
wrinkled
nuclear
alterations
MYH9-based
microtubule
organization,
suggest
stiff
disturbed
sensing
response
biomechanical
cues.
Conclusions
Our
results
indicate
within
epithelium
towards
composed
progenitors
must
dynamically
fluctuate
allow
complexity
arborization
new
formation.
The
data
collectively
propose
model
crowding
tandem
stretching
transforms
individual
into
elliptical
elongated
shapes.
This
creates
local
curvatures
drive
formation
ampulla-to-asymmetric
ampulla
transition
bud.