Earth-Science Reviews,
Год журнала:
2024,
Номер
252, С. 104767 - 104767
Опубликована: Апрель 2, 2024
The
extent
to
which
the
sequence
and
timing
of
important
events
on
Earth
have
influenced
biological
evolution
through
geological
time
is
a
matter
ongoing
debate.
In
this
context,
phylogenetic
history
aquatic
insects
remains
largely
elusive,
our
understanding
their
chronology
fragmentary
incomplete
at
best.
Here,
after
gathering
comprehensive
data
matrix
3125
targeted
rRNA
protein-coding
gene
sequences
from
nine
independent
portions,
we
built
well-supported
time-calibrated
tree
comprising
almost
1200
genera
that
represent
large
proportion
extant
families
dragonflies
damselflies
(Odonata),
mayflies
(Ephemeroptera),
stoneflies
(Plecoptera),
caddisflies
(Trichoptera).
We
reviewed
main
evolutionary
historical
scenarios
for
each
insect
lineage
as
revealed
by
best-scoring
molecular
topology,
major
ancient
radiations,
calibrated
divergence
estimates,
in
related
spatial
arrangement
land
masses,
continental
drift,
mass
extinctions.
Molecular
dating
using
birth-death
model
speciation,
with
lognormal-relaxed
informed
transcriptomic
constraints,
suggested
(i)
first
radiated
approximately
220
million
years
(Ma)
ago
most
lineages
thrived
independently
Triassic–Jurassic
(Tr–J)
extinction
event;
(ii)
underwent
bursts
diversification
during
Cretaceous;
(iii)
ancestral
separating
stonefly
suborders
Arctoperlaria
Antarctoperlaria
was
consistent
geographical
isolation
vicariant
fragmentation
tectonic
splitting
supercontinent
Pangaea
around
170
Ma
ago;
(iv)
recent
common
ancestors
extended
back
Pangaea,
supporting
earliest
offshoot
'retreat-making'
Annulipalpia
sister
relationship
between
predatory
free-living
Rhyacophilidae
Hydrobiosidae.
Our
'Tree
Life'
also
resolved
shallow
relationships
key
innovations,
such
convergent
exophytic
oviposition
or
Jurassic
origins
burrowing
lifestyle
mayflies.
study,
illustrate
how
phylogeny
can
help
integrate
aspects
biogeographical
ecological
research
across
world.
To
do
so,
used
three
empirical
datasets
stream
subarctic
Finland,
northeastern
Spain,
southeastern
Tibet
exemplary
cases.
These
examples
application
tested
ecogeographical
mechanisms
responses
size
structural
resemblances
patterns
relatedness
uniqueness
along
elevational
flow-intermittence
gradients,
respectively.
emphasise
specific
details
capturing
different
variation
are
dependent
geological,
geographical,
environmental
contexts
drainage
basins.
finally
highlight
potential
venues
future
research,
including
evaluations
diversity
space
time,
characters
relation
palaeoclimatic
variation,
development
complementary
algorithms
conservation
prioritisation
evolutionarily
valuable
bioregions
insects.
Overall,
hope
work
will
stimulate
multidisciplinary
efforts
among
areas
biogeosciences
towards
safeguarding
heritage
Evolution,
Год журнала:
2008,
Номер
62(4), С. 715 - 739
Опубликована: Апрель 1, 2008
Clade
dynamics
in
the
fossil
record
broadly
fit
expectations
from
operation
of
competition,
predation,
and
mutualism,
but
data
both
modern
ancient
systems
suggest
mismatches
across
scales
levels.
Indirect
effects,
as
when
antagonistic
or
mutualistic
interactions
restrict
geographic
range
thereby
elevate
extinction
risk,
are
probably
widespread
may
flow
directions,
species‐
organismic‐level
factors
increase
risk
speciation
probabilities.
Apparent
contradictions
levels
have
been
neglected,
including
(1)
individualistic
shifts
species
on
centennial
millennial
timescales
versus
evidence
for
fine‐tuned
coevolutionary
relationships;
(2)
extensive
dynamic
networks
faced
by
most
evolution
costly
enemy‐specific
defenses
finely
attuned
mutualisms;
(3)
macroevolutionary
lags
often
seen
between
origin
diversification
a
clade
an
evolutionary
novelty
rapid
microevolution
advantageous
phenotypes
invasibility
communities.
Resolution
these
other
cross‐level
tensions
presumably
hinges
how
organismic
impinge
genetic
population
structures,
ranges,
persistence
incipient
species,
generalizations
not
yet
possible.
Paleontological
neontological
incomplete
so
powerful
response
to
problems
will
require
novel
integrative
approaches.
Promising
research
areas
include
more
realistic
approaches
modeling
empirical
analysis
large‐scale
diversity
ostensibly
competing
clades;
spatial
phylogenetic
dissections
clades
involved
escalatory
(where
prey
respond
evolutionarily
broad
shifting
array
enemies);
analyses
short‐
long‐term
consequences
symbioses;
fuller
use
abundant
natural
experiments
impacts
ecosystem
engineers.
Frontiers in Ecology and Evolution,
Год журнала:
2022,
Номер
10
Опубликована: Дек. 7, 2022
Conservation
paleobiology
has
coalesced
over
the
last
two
decades
since
its
formal
coining,
united
by
goal
of
applying
geohistorical
records
to
inform
conservation,
management,
and
restoration
biodiversity
ecosystem
services.
Yet,
field
is
still
attempting
form
an
identity
distinct
from
academic
roots.
Here,
we
ask
a
deceptively
simple
question:
What
conservation
paleobiology?
To
track
development
as
field,
synthesize
complementary
perspectives
survey
scientific
community
that
familiar
with
systematic
literature
review
publications
use
term.
We
present
overview
paleobiology’s
research
scope
compare
participants’
perceptions
what
it
should
be
field.
find
paleobiologists
variety
data
in
their
work,
although
typified
near-time
marine
molluscs
terrestrial
mammals
collected
local
regional
spatial
scales.
Our
results
also
confirm
field’s
broad
disciplinary
basis:
participants
indicated
can
incorporate
information
wide
range
disciplines
spanning
biology,
ecology,
historical
paleontology,
archaeology.
Finally,
show
have
yet
reach
consensus
on
how
applied
practice.
The
revealed
many
thought
more
but
most
do
not
currently
engage
Reflecting
developed
decades,
discuss
opportunities
promote
cohesion,
strengthen
collaborations
within
science,
align
training
priorities
continues
crystallize.
Annual Review of Ecology Evolution and Systematics,
Год журнала:
2022,
Номер
53(1), С. 251 - 273
Опубликована: Авг. 17, 2022
Over
the
past
decade,
a
new
set
of
methods
for
estimating
dated
trees
has
emerged.
Originally
referred
to
as
fossilized
birth–death
(FBD)
process,
this
single
model
expanded
family
models
that
allows
researchers
coestimate
evolutionary
parameters
(e.g.,
diversification,
sampling)
and
patterns
alongside
divergence
times
variety
applications
from
paleobiology
real-time
epidemiology.
We
provide
an
overview
models.
explore
ways
in
which
these
correspond
quantitative
paleobiology,
FBD
process
provides
framework
through
neontological
paleontological
approaches
phylogenetics
macroevolution
can
be
unified.
also
challenges
associated
with
applying
models,
particularly
eye
toward
fossil
record.
conclude
review
by
discussing
several
exciting
avenues
inclusion
data
phylogenetic
analyses.
Cambridge Prisms Extinction,
Год журнала:
2024,
Номер
2
Опубликована: Янв. 1, 2024
Abstract
Phylodynamic
models
can
be
used
to
estimate
diversification
trajectories
from
time-calibrated
phylogenies.
Here
we
apply
two
such
phylogenies
of
non-avian
dinosaurs,
a
clade
whose
evolutionary
history
has
been
widely
debated.
Although
some
authors
have
suggested
that
the
experienced
decline
in
diversity,
potentially
starting
millions
years
before
end-Cretaceous
mass
extinction,
others
group
remained
highly
diverse
right
up
until
Cretaceous-Paleogene
(K-Pg)
boundary.
Our
results
show
model
assumptions,
likely
with
respect
incomplete
sampling,
large
impact
on
whether
dinosaurs
appear
long-term
or
not.
The
are
also
sensitive
topology
and
branch
lengths
phylogeny
used.
Developing
comprehensive
sampling
bias,
building
larger
more
accurate
phylogenies,
necessary
steps
for
us
determine
dinosaur
diversity
was
not
extinction.
Paleobiology,
Год журнала:
2024,
Номер
50(2), С. 177 - 193
Опубликована: Фев. 5, 2024
Abstract
The
fossil
record
is
spatiotemporally
heterogeneous:
taxon
occurrence
data
have
patchy
spatial
distributions,
and
this
patchiness
varies
through
time.
Large-scale
quantitative
paleobiology
studies
that
fail
to
account
for
heterogeneous
sampling
coverage
will
generate
uninformative
inferences
at
best
confidently
draw
wrong
conclusions
worst.
Explicitly
methods
of
standardization
are
necessary
analyses
large-scale
datasets,
because
nonspatial
sample
standardization,
such
as
diversity
rarefaction,
insufficient
reduce
the
signal
varying
time
or
between
environments
clades.
Spatial
should
control
both
geographic
area
dispersion
(spread)
localities.
In
addition
standardizing
distribution
data,
other
factors
may
be
standardized,
including
environmental
heterogeneity
number
publications
field
collecting
units
report
occurrences.
Using
a
case
study
published
global
Paleobiology
Database
occurrences,
we
demonstrate
strong
signals
sampling;
without
these
signatures
could
misattributed
biological
processes.
We
discuss
practical
issues
implementing
via
subsampling
present
new
R
package
divvy
improve
accessibility
analysis.
software
provides
three
approaches,
well
related
tools
quantify
coverage.
After
reviewing
theory,
practice,
history
equalizing
comparison
groups,
outline
priority
areas
collection,
analysis,
reporting
practices
in
paleobiology.
The
drivers
of
Ediacaran-Cambrian
metazoan
radiations
remain
unclear,
as
does
the
fidelity
record.
We
use
a
global
age
framework
[580-510
million
years
(Ma)
ago]
to
estimate
changes
in
marine
sedimentary
rock
volume
and
area,
reconstructed
biodiversity
(mean
genus
richness),
sampling
intensity,
integrated
with
carbonate
carbon
isotopes
(δ
Science,
Год журнала:
2024,
Номер
385(6712), С. 986 - 991
Опубликована: Авг. 29, 2024
Massive
salt
accumulations,
or
giants,
have
formed
in
highly
restricted
marine
basins
throughout
geological
history,
but
their
impact
on
biodiversity
has
been
only
patchily
studied.
The
giant
the
Mediterranean
Sea
as
a
result
of
restriction
its
gateway
to
Atlantic
during
Messinian
Salinity
Crisis
(MSC)
5.97
5.33
million
years
ago.
Here,
we
quantify
changes
associated
with
MSC
based
compilation
fossil
record.
We
conclude
that
86
endemic
species
2006
pre-MSC
survived
crisis,
and
present
eastward-decreasing
richness
gradient
was
established
after
MSC.
Paleobiology,
Год журнала:
2023,
Номер
49(3), С. 377 - 393
Опубликована: Фев. 27, 2023
Over
the
last
50
years,
access
to
new
data
and
analytical
tools
has
expanded
study
of
paleobiology,
contributing
innovative
analyses
biodiversity
dynamics
over
Earth's
history.
Despite-or
even
spurred
by-this
growing
availability
resources,
paleobiology
faces
deep-rooted
obstacles
that
stem
from
need
for
more
equitable
best
practices
guide
fossil
record.
Recent
progress
been
accelerated
by
a
collective
push
toward
collaborative,
interdisciplinary,
open
science,
especially
early-career
researchers.
Here,
we
survey
four
challenges
facing
an
perspective:
(1)
accounting
biases
when
interpreting
record;
(2)
integrating
modern
data;
(3)
building
science
skills;
(4)
increasing
accessibility
equity.
We
discuss
recent
efforts
address
each
challenge,
highlight
persisting
barriers,
identify
have
advanced
work.
Given
inherent
linkages
between
these
challenges,
encourage
discourse
across
disciplines
find
common
solutions.
also
affirm
systemic
changes
reevaluate
how
conduct
share
paleobiological
research.
Earth-Science Reviews,
Год журнала:
2024,
Номер
255, С. 104844 - 104844
Опубликована: Июнь 21, 2024
The
"Great
Acceleration"
of
the
mid-20th
century
provides
causal
mechanism
Anthropocene,
which
has
been
proposed
as
a
new
epoch
geological
time
beginning
in
1952
CE.
Here
we
identify
key
parameters
and
their
diagnostic
palaeontological
signals
including
rapid
breakdown
discrete
biogeographical
ranges
for
marine
terrestrial
species,
changes
to
ecologies
resulting
from
climate
change
ecological
degradation,
spread
exotic
foodstuffs
beyond
range,
accumulation
reconfigured
forest
materials
such
medium
density
fibreboard
(MDF)
all
being
symptoms
Great
Acceleration.
We
show:
1)
how
Anthropocene
successions
North
America,
South
Africa,
Oceania,
Europe,
Asia
can
be
correlated
using
signatures
highly
invasive
species
that
demonstrate
growing
interconnectivity
human
systems;
2)
unique
depositional
settings
landfills
may
concentrate
remains
organisms
far
geographical
range
environmental
tolerance;
3)
preserve
long-lived,
record
within
post-mid-20th
deposits.
Collectively
these
provide
global
signature
is
distinct
past
records
deep-time
biotic
change,
those
Holocene.