Pseudomonas aeruginosa and related antibiotic resistance genes as indicators for wastewater treatment DOI Creative Commons
Alariqi Reem,

Siham Almansoob,

Ahmed M. Senan

и другие.

Heliyon, Год журнала: 2024, Номер 10(9), С. e29798 - e29798

Опубликована: Апрель 21, 2024

This review aims to examine the existence of Pseudomonas aeruginosa (P. aeruginosa) and their antibiotic resistance genes (ARGs) in aquatic settings alternative treatment ways. P. a various environment have been identified as contaminants with impacts on human health environment. multiple antibiotics, such sulfamethoxazole, ciprofloxacin, quinolone, trimethoprim, tetracycline, vancomycin, well specific including sul1, qnrs, blaVIM, blaTEM, blaCTX, blaAIM-1, tetA, ampC, blaVIM. The development can occur naturally, through mutations, or via horizontal gene transfer facilitated by sterilizing agents. In addition, an overview current knowledge inactivation ARG mechanisms action disinfection processes water wastewater (UV chlorine processes, catalytic oxidation, Fenton reaction, ozonation,) is given. An effects nanotechnology resulting wetlands also

Язык: Английский

Pseudomonas aeruginosa: pathogenesis, virulence factors, antibiotic resistance, interaction with host, technology advances and emerging therapeutics DOI Creative Commons
Shugang Qin, Wen Xiao, Chuan‐Min Zhou

и другие.

Signal Transduction and Targeted Therapy, Год журнала: 2022, Номер 7(1)

Опубликована: Июнь 25, 2022

Abstract Pseudomonas aeruginosa ( P. ) is a Gram-negative opportunistic pathogen that infects patients with cystic fibrosis, burn wounds, immunodeficiency, chronic obstructive pulmonary disorder (COPD), cancer, and severe infection requiring ventilation, such as COVID-19. also widely-used model bacterium for all biological areas. In addition to continued, intense efforts in understanding bacterial pathogenesis of including virulence factors (LPS, quorum sensing, two-component systems, 6 type secretion outer membrane vesicles (OMVs), CRISPR-Cas their regulation), rapid progress has been made further studying host-pathogen interaction, particularly host immune networks involving autophagy, inflammasome, non-coding RNAs, cGAS, etc . Furthermore, numerous technologic advances, bioinformatics, metabolomics, scRNA-seq, nanoparticles, drug screening, phage therapy, have used improve our defense. Nevertheless, much remains be uncovered about interactions between responses, mechanisms resistance by known or unannotated well mammalian cell signaling pathways. The widespread use antibiotics the slow development effective antimicrobials present daunting challenges necessitate new theoretical practical platforms screen develop mechanism-tested novel drugs treat intractable infections, especially those caused multi-drug strains. Benefited from advancing research tools technology, dissecting this pathogen’s feature entered into molecular mechanistic details dynamic holistic views. Herein, we comprehensively review discuss current status biophysical traits, behaviors, factors, invasive regulators, defense patterns against its infection, which point out directions future investigation add design and/or alternative therapeutics combat clinically significant pathogen.

Язык: Английский

Процитировано

714

Pseudomonas aeruginosa: An Audacious Pathogen with an Adaptable Arsenal of Virulence Factors DOI Open Access
Irene Jurado‐Martín, Maite Sainz-Mejías, Siobhán McClean

и другие.

International Journal of Molecular Sciences, Год журнала: 2021, Номер 22(6), С. 3128 - 3128

Опубликована: Март 18, 2021

Pseudomonas aeruginosa is a dominant pathogen in people with cystic fibrosis (CF) contributing to morbidity and mortality. Its tremendous ability adapt greatly facilitates its capacity cause chronic infections. The adaptability flexibility of the are afforded by extensive number virulence factors it has at disposal, providing P. facility tailor response against different stressors environment. A deep understanding these mechanisms crucial for design therapeutic strategies vaccines this multi-resistant pathogen. Therefore, review describes main adaptations undergoes persist hostile environments such as CF respiratory tract. very large genome (5 7 MB) contributes considerably adaptive capacity; consequently, genomic studies have provided significant insights into elucidating evolution interactions host throughout course infection.

Язык: Английский

Процитировано

438

Pseudomonas aeruginosa adaptation and evolution in patients with cystic fibrosis DOI
Elio Rossi, Ruggero La Rosa, Jennifer A. Bartell

и другие.

Nature Reviews Microbiology, Год журнала: 2020, Номер 19(5), С. 331 - 342

Опубликована: Ноя. 19, 2020

Язык: Английский

Процитировано

360

Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture DOI Creative Commons
Ke Jing, Bing Wang, Yasuo Yoshikuni

и другие.

Trends in biotechnology, Год журнала: 2020, Номер 39(3), С. 244 - 261

Опубликована: Авг. 13, 2020

Mutualistic microbes associated with plants have enormous potential for economical and sustainable agriculture.There are two approaches to plant microbiome engineering: the bottom-up approach that involves isolating, engineering, reintroducing specific microbes, top-down synthetic ecology, using horizontal gene transfer a broad range of hosts in situ then phenotyping microbiome.Recent advances genome engineering tools, meta-omic computational genome-wide functional genomics can improve our ability engineer biocontrol, biofertilization, biostimulation, as well enhanced crop productivity yield.Various devices facilitate evaluation genetically modified before field studies.Robust biosafety, biosecurity, biocontainment strategies need be developed use environment. To support an ever-increasing population, modern agriculture faces numerous challenges pose major threats global food energy security. Plant-associated their many growth-promoting (PGP) traits, helping solve these challenges. However, results been variable, probably because poor colonization. Phytomicrobiome is emerging biology may offer ways alleviate this limitation. This review highlights recent both non-model bacteria microbiomes promote beneficial plant–microbe interactions, evaluate interactions. Biosafety, address environmental concerns also discussed. The United Nations estimates world population will 9.8 billion people by 2050 (https://population.un.org/wpp/). Agricultural must increase estimated 70% meet increasing demand food, feed, fiber, bioenergy (Global Productivity Initiative: https://globalagriculturalproductivity.org/). Because arable acreage unlikely grow [1.Bruinsma J. Crop production natural resource use.in: Bruinsma World Agriculture: Towards 2015/2030: An FAO Perspective. Earthscan Publications, 2003: 127-137Google Scholar], meeting requires achieving higher yields, currently attempted artificial fertilizers pesticides whose manufacture not sustainable. Synthetic nitrogen (N) fertilizer energy-intensive [2.Wang M. Greenhouse Gases, Regulated Emissions, Energy Use Transportation (GREET) Model: Version 1.5. Center Research, Argonne National Laboratory, 1999Google Scholar]. Phosphorous (P) potassium (K) mainly produced from finite mined resources likely depleted within 100 years. Pesticides carcinogenic, developmental, risks restricted [3.Hoppin J.A. LePrevost C.E. human health.in: Coll Wajnberg E. Environmental Pest Management: Challenges Agronomists, Ecologists, Economists Policymakers. Wiley, 2017: 251-273Crossref Google Scholar,4.Upadhayay et al.Impact pesticide exposure health effects.in: Srivastava P.K. Production: Physiological Biochemical Action. 2020: 69-88Crossref More achieve ever-higher yield urgently needed. harbor provide solutions current agricultural Although diverse ecological niches [5.Compant S. al.A on microbiome: functions trends microbial application.J. Adv. Res. 2019; 19: 29-37Crossref PubMed Scopus (0) Scholar,6.Levy A. al.Elucidating bacterial microbiome.Cell Host Microbe. 2018; 24: 475-485Abstract Full Text PDF (15) traits (see Glossary) [7.Shelake R.M. al.Exploration interactions CRISPR era.Microorganisms. 7: 269Crossref (6) Many PGP isolated, some widely accepted biofertilizers, biostimulants, biocontrol agents (www.cropscience.bayer.com/innovations/agriculture-biologicals/a/hidden-helpers-below-ground). applying fields commercial adoption has had limited success [8.Glick B.R. Plant bacteria: mechanisms applications.Scientifica. 2012; 2012963401Crossref Scholar, 9.Thompson I.P. al.Survival, colonization dispersal Pseudomonas fluorescens SBW25 phytosphere grown sugar beet.Nat. Biotechnol. 1995; 13: 1493-1497Crossref (44) 10.Bloch S.E. al.Biological fixation maize: optimizing nitrogenase expression root-associated diazotroph.J. Exp. Bot. 2020; 71: 4591-4603Crossref 11.De Leij F.A. al.Field release wheat: establishment, survival dissemination.Nat. 1488-1492Crossref (32) 12.Jäderlund L. al.Use novel nonantibiotic triple marker cassette monitor high winter wheat field.FEMS Microbiol. Ecol. 2008; 63: 156-168Crossref (13) new excluded more-resilient existing communities [13.Shade al.Fundamentals community resistance resilience.Front. 3: 417Crossref (556) composition shaped over time through complex multilateral environment [14.Haichar F. al.Plant host habitat root exudates shape soil structure.ISME 2: 1221-1230Crossref 15.Hardoim P.R. al.The hidden plants: evolutionary considerations defining functioning endophytes.Microbiol. Mol. Biol. Rev. 2015; 79: 293-320Crossref (733) 16.Reinhold-Hurek B. al.Roots shaping hotspots activity.Annu. Phytopathol. 53: 403-424Crossref 17.Peterson S.B. al.Peptidoglycan Bacillus cereus mediates commensalism rhizosphere Cytophaga-Flavobacterium group.Appl. Environ. 2006; 72: 5421-5427Crossref (29) 18.Hu al.Root exudate metabolites drive plant–soil feedbacks growth defense microbiota.Nat. Commun. 9: 2738Crossref 19.Rodriguez P.A. al.Systems interactions.Mol. Plant. 12: 804-821Abstract 20.Dangl J.L. Jones J.D. pathogens integrated defence responses infection.Nature. 2001; 411: 826-833Crossref (2693) Finding microorganisms sustainably development, nutrition, fitness, disease control, dynamic stressful environments therefore depends developing manage phytomicrobiomes Scholar,15.Hardoim Scholar,21.Lemanceau P. al.Let core microbiota functional.Trends Sci. 2017; 22: 583-595Abstract 22.Niu al.Simplified representative maize roots.Proc. Natl. Acad. U. 114: E2450-E2459Crossref (153) 23.Zgadzaj R. nodule symbiosis Lotus japonicus drives establishment distinctive rhizosphere, root, communities.Proc. 2016; 113: E7996-E8005Crossref (102) 24.Haney C.H. al.Associations confer adaptive advantage plants.Nat. Plants. 115051Crossref Meta-omic studies tools researchers understanding among phytomicrobiomes. Knowledge derived [25.Mitter al.Plant–microbe partnerships 2020.Microb. 635-640Crossref (19) such only effective under conditions extremely complex, heterogeneous, systems. limitations, based increasingly recognized way give advantages [26.Mueller U.G. Sachs Engineering animal health.Trends 23: 606-617Abstract (183) allows laboratory selection according colonize plants, specifically basis how they deliver advantages. Researchers could potentially species locations (e.g., roots, leaves) at different developmental stages various conditions. In addition, consolidated engineered microbiomes. (GMMs) strictly regulated. since first trial evaluating syringae, which was carried out University California experimental plots 1987, academia industry investigated GMMs nearly three decades without notable accidents and/or [10.Bloch Scholar,27.De indigenous populations wheat.Appl. 61: 3443-3453Crossref Scholar,28.Wozniak C.A. al.Regulation FIFRA, FFDCA TSCA.in: McHughen Wozniak Regulation Biotechnology: States Canada. Springer, 2012: 57-94Crossref (7) suggesting might safely used regulations. These successes now motivating further exploration GMM directly environment, US agencies initiated research programs develop methodologies counter, even reverse effects. Several companies investigating sustainability, related strategies, business model Synlogic, Pivot Bio, JOYN NOVOME Biotechnologies, 64-X). near future, efforts prove safe strategy sustainability agriculture. Accordingly, we here strain make more amenable applications, discuss mitigate impacts (Figure 1). 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Most focus established Escherichia coli. discover functions, engineered, but challenging organism-specific nuances hinder universal tools. host-range (BHR) plasmids one [32.Jain Broad plasmids.FEMS Lett. 2013; 348: 87-96Crossref (21) For example, BHR were microbe–microbe mediated quorum-sensing circuits [33.You al.Programmed control cell–cell communication regulated killing.Nature. 2004; 428: 868-871Crossref (477) Scholar,34.Hong S.H. al.Synthetic circuit consortial biofilm formation microfluidic device.Nat. 3613Crossref (108) Scholar] elucidate function secondary metabolite biosynthetic clusters (BGCs) providing plant-benefiting [35.Hennecke Recombinant carrying Rhizobium japonicum.Nature. 1981; 291: 354-355Crossref Scholar,36.Beyeler al.Enhanced indole-3-acetic acid CHA0 affects cucumber, does protection against Pythium rot.FEMS 1999; 28: 225-233Crossref although versatile, selective pressure necessary maintain them. Microbiome conversely, genome-level stably Fortunately, greatly improved. 3 shows useful including phage integrases, integrative conjugative (ICEs), chassis-independent recombinase-assisted (CRAGE), others [37.Ke Yoshikuni Y. Multi-chassis heterologous products.Curr. Opin. 62: 88-97Crossref (2) All single-step integration large DNA constructs >50 kb length, permit stacking multiple System depend target phyla. integrase, ICE, CRAGE commonly Actinobacteria, Firmicutes, Proteobacteria, respectively. Phage integrases catalyze efficient recombination between attachment sites attP–attB) [38.Fogg P.C. al.New applications integrases.J. 2014; 426: 2703-2716Crossref (88) versatile 3A). Streptomyces πC31 system characterization BGCs compatible Actinobacteria [39.Liu al.Rapid cloning meridamycin cluster coli−Streptomyces chromosome vector, pSBAC.J. Nat. Prod. 2009; 389-395Crossref 40.Li stepwise pristinamycin II biosynthesis pristinaespiralis combinatorial metabolic engineering.Metab. Eng. 29: 12-25Crossref (42) 41.Li al.Multiplexed site-specific overproducing bioactive actinomycetes.Metab. 40: 80-92Crossref (37) 42.Myronovskyi al.Generation cluster-free albus chassis strains improved clusters.Metab. 49: 316-324Crossref (39) A Bxb1 intN2 reliable putida [43.Elmore J.R. al.Development efficiency promoter library rapid modification KT2440.Metab. 5: 1-8Crossref commensal Bacteroides [44.Mimee al.Programming bacterium, thetaiotaomicron, sense respond stimuli murine gut microbiota.Cell Syst. 1: 62-71Abstract (128) 45.García-Bayona Comstock L.E. Streamlined manipulation Parabacteroides isolates microbiota.MBio. 10e01762-19Crossref 46.Wang al.Characterization mobilizable transposon, NBU2, carries lincomycin gene.J. Bacteriol. 2000; 182: 3559-3571Crossref (61) require native site each introduced [47.Dafhnis-Calas al.Iterative vivo assembly transgenes combining activities φC31 integrase Cre recombinase.Nucleic Acids 2005; 33: e189Crossref With systems, vector backbone remains scar Mini-Tn7 another promising transposon-based tool [48.Choi K.H. Tn 7-based broad-range system.Nat. Methods. 443-448Crossref 49.Kumar al.Mini-Tn7 vectors single copy Acinetobacter baumannii.J. 2010; 82: 296-300Crossref 50.LoVullo E.D. al.Single-copy chromosomal Francisella tularensis.Microbiology. 155: 1152-1163Crossref (48) mini-Tn7 relatively small [51.Roos K. al.Multicopy transposons selected Salmonella vaccine strain.Microb. 8: 177-187Crossref ICEs group MGEs via propagate replication 3B). They encode conjugation mediate intercellular [52.Johnson C.M. Grossman A.D. Integrative (ICEs): what do work.Annu. Genet. 577-601Crossref (168) autonomous [53.Lee al.Autonomous plasmid-like transposon.Mol. 75: 268-279Crossref Some conserved prfC, tRNA genes) range, evolved seamless mechanism 5′ end prevent disruption [54.Touchon accommodation domestication elements.Curr. 22-29Crossref (26) Scholar,55.Botelho al.Antibiotic aeruginosa – mechanisms, epidemiology evolution.Drug Resist. Updat. 44100640Crossref Other less AT-rich regions), fitness disrupting physiologically important [56.Wozniak R.A. Waldor M.K. elements: mosaic enabling lateral flow.Nat. 552-563Crossref (438) Genes encoding machinery, transposases identified incorporated domesticated mating partners, coli subtilis Scholar,57.Inda M.E. al.Emerging frontiers engineering.Trends Immunol. 952-973Abstract Scholar,58.Brophy al.Engineered inducible undomesticated bacteria.Nat. 1043-1053Crossref (40) [59.Cury al.Integrative hosts: composition, distribution organization.Nucleic 45: 8943-8956Crossref (27) recipients usually limited, drops exponentially construct size increases [58.Brophy colleagues recently CRAGE, technology enables highly accurate large, biological chromosomes 3C) [60.Wang G. al.CRAGE activation 2498-2510Crossref (16) process begins landing pad (LP) containing P1 recombinase flanked mutually exclusive loxP sites. Constructs pathways assembled accessory vectors. As proof concept, 25 γ-Proteobacteria 11 genera integrating unified LP enabled BGCs. substantially increased successful BGC harnessing regulatory physiological diversity species. extended 40 α-, β-, several Actinobacteria. CRAGE's versatility makes it microbe genomes characterizing pathway Overcoming restriction/modification common problem Unique protect them foreign DNA, limiting transformation. Riley overcame limitation evade immune Clostridium thermocellum [61.Riley L.A. al.Rational development transformation ATCC 27405 complete methylome analysis evasion restriction-modification systems.J. Ind. 46: 1435-1443Crossref corresponding methyltransferases cloned mimic C. methylome. 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Rep. 6: 125-130Crossref Based ICE subtilis, Brophy coworkers created miniaturized (mini-ICEBs1) delivery wide Firmicutes collected humans soil, variable (10−1 10−7 conjugations per donor) 3D) demonstrated (XPORT) 10 synthetically defined consortium situ, there four six s

Язык: Английский

Процитировано

264

Environmental antibiotics and resistance genes as emerging contaminants: Methods of detection and bioremediation DOI Creative Commons

Niharika Koch,

Nazim Forid Islam,

Songita Sonowal

и другие.

Current Research in Microbial Sciences, Год журнала: 2021, Номер 2, С. 100027 - 100027

Опубликована: Март 15, 2021

In developing countries, the use of antibiotics has helped to reduce mortality rate by minimizing deaths caused pathogenic infections, but costs antibiotic contamination remain a major concern. Antibiotics are released into environment, creating complicated environmental problem. used in human, livestock and agriculture, contributing its escalation environment. Environmental pose range risks have significant effects on human animal health. Nevertheless, this is result development antibiotic-resistant multi-drug-resistant bacteria. area health care, husbandry crop processing, imprudent drugs produces This threat deepest world, with an estimated 700,000 people suffering from infections each year. The study explores how bacteria wide variety resistance mechanism these approaches impact environment our paper focuses processes which degrade, emerging contaminants, tolerance antibiotics.

Язык: Английский

Процитировано

180

Manure as a Potential Hotspot for Antibiotic Resistance Dissemination by Horizontal Gene Transfer Events DOI Creative Commons
Tiago Lima, Sara Domingues, Gabriela Silva

и другие.

Veterinary Sciences, Год журнала: 2020, Номер 7(3), С. 110 - 110

Опубликована: Авг. 13, 2020

The increasing demand for animal-derived foods has led to intensive and large-scale livestock production with the consequent formation of large amounts manure. Livestock manure is widely used in agricultural practices as soil fertilizer worldwide. However, several antibiotic residues, resistance genes (ARGs) antibiotic-resistant bacteria are frequently detected manure-amended soils. This review explores role persistence dissemination ARGs environment, analyzes procedures decrease antimicrobial potential impact application public health. We highlight that shows unique features a hotspot gene by horizontal transfer events: richness nutrients, high abundance diversity populations residues may exert selective pressure on trigger mobilization; reduction methodologies able reduce concentrations some, but not all, antimicrobials microorganisms. Conjugation events often seen even after composting. Antibiotic considered growing threat human, animal environmental Therefore, it crucial amount load resistant end up soil.

Язык: Английский

Процитировано

164

The Role of Integrative and Conjugative Elements in Antibiotic Resistance Evolution DOI
João Botelho, Hinrich Schulenburg

Trends in Microbiology, Год журнала: 2020, Номер 29(1), С. 8 - 18

Опубликована: Июнь 11, 2020

Язык: Английский

Процитировано

162

Treatment options for K. pneumoniae, P. aeruginosa and A. baumannii co-resistant to carbapenems, aminoglycosides, polymyxins and tigecycline: an approach based on the mechanisms of resistance to carbapenems DOI Open Access
Stamatis Karakonstantis, Evangelos I. Kritsotakis, Achilleas Gikas

и другие.

Infection, Год журнала: 2020, Номер 48(6), С. 835 - 851

Опубликована: Сен. 1, 2020

Язык: Английский

Процитировано

144

Use of Essential Oils to Counteract the Phenomena of Antimicrobial Resistance in Livestock Species DOI Creative Commons

Carmine Lupia,

Fabio Castagna, Roberto Bava

и другие.

Antibiotics, Год журнала: 2024, Номер 13(2), С. 163 - 163

Опубликована: Фев. 7, 2024

Antimicrobial resistance is an increasingly widespread phenomenon that of particular concern because the possible consequences in years to come. The dynamics leading microbial strains are diverse, but certainly include incorrect use veterinary drugs both terms dosage and timing administration. Moreover, drug often administered absence a diagnosis. Many active ingredients pharmaceutical formulations are, therefore, losing their efficacy. In this situation, it imperative seek alternative treatment solutions. Essential oils mixtures compounds with different pharmacological properties. They have been shown possess antibacterial, anti-parasitic, antiviral, regulatory properties numerous metabolic processes. abundance molecules they contain makes difficult for treated species develop resistance. Given natural origin, environmentally friendly show little or no toxicity higher animals. There several published studies on essential as antimicrobials, present literature has not adequately summarized manuscript. This review aims shed light results achieved by scientific community regarding treat main agents bacterial infection interest livestock. Google Scholar, PubMed, SciELO, SCOPUS databases were used search selection studies. manuscript lay foundations new strategy more less prone emergence phenomena.

Язык: Английский

Процитировано

18

Antibiotic contamination in wastewater treatment plant effluents: Current research and future perspectives DOI

Parnika Mishra,

Gyanendra Tripathi, Vaishnavi Mishra

и другие.

Environmental Nanotechnology Monitoring & Management, Год журнала: 2025, Номер unknown, С. 101047 - 101047

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

2