Unraveling the genetic tapestry of Indian chicken: A comprehensive study of molecular variations and diversity
Ecological Genetics and Genomics,
Год журнала:
2024,
Номер
30, С. 100220 - 100220
Опубликована: Янв. 9, 2024
Язык: Английский
Evolutionary stamps for adaptation traced in Cervus nippon genome using reduced representation sequencing
Conservation Genetics Resources,
Год журнала:
2024,
Номер
16(1), С. 135 - 146
Опубликована: Янв. 27, 2024
Язык: Английский
Global and Local Ancestry and its Importance: A Review
Current Genomics,
Год журнала:
2024,
Номер
25(4), С. 237 - 260
Опубликована: Май 10, 2024
The
fastest
way
to
significantly
change
the
composition
of
a
population
is
through
admixture,
an
evolutionary
mechanism.
In
animal
breeding
history,
genetic
admixture
has
provided
both
short-term
and
long-term
advantages
by
utilizing
phenomenon
complementarity
heterosis
in
several
traits
diversity,
respectively.
traditional
method
analysis
pedigree
records
now
been
replaced
greatly
genome-wide
marker
data
that
enables
more
precise
estimations.
Among
these
markers,
SNPs
have
popular
choice
since
they
are
cost-effective,
not
so
laborious,
automation
genotyping
easy.
Certain
markers
can
suggest
possibility
population's
origin
from
sample
DNA
where
source
individual
unknown
or
unwilling
disclose
their
lineage,
which
called
Ancestry-Informative
Markers
(AIMs).
Revealing
level
at
locus-specific
termed
as
local
ancestry
be
exploited
identify
signs
recent
selective
response
account
for
drift.
Considering
importance
ancestry,
this
mini-review,
concepts
illustrated,
encompassing
basics,
estimation/identification
methods,
tools/software
used
applications.
Язык: Английский
Insights from homozygous signatures of cervus nippon revealed genetic architecture for components of fitness
Rangasai Chandra Goli,
Karan Mahar,
Peela Sai Manohar
и другие.
Mammalian Genome,
Год журнала:
2024,
Номер
35(4), С. 657 - 672
Опубликована: Авг. 27, 2024
Язык: Английский
X-linked signatures of positive selection and adaptive genetic plasticity shaping high-altitude resilience in Indian Changthangi sheep
Rangasai Chandra Goli,
Karan Mahar,
Kiyevi G Chishi
и другие.
Small Ruminant Research,
Год журнала:
2025,
Номер
unknown, С. 107492 - 107492
Опубликована: Март 1, 2025
Язык: Английский
Rethinking River Buffalo Domestication Through the Lens of Population Genetics Tools: Mehsana Buffalo Is a Unique Population
Rangasai Chandra Goli,
Kiyevi G Chishi,
Karan Mahar
и другие.
OMICS A Journal of Integrative Biology,
Год журнала:
2025,
Номер
unknown
Опубликована: Апрель 15, 2025
Riverine
buffalo
domestication
likely
occurred
around
6300
years
ago
in
Northwestern
India.
Murrah
and
Surti
are
important
breeds
that
originated
this
region
the
gene
flow
from
these
buffaloes
to
Mehsana
has
long
been
proposed.
However,
extent
which
ancestry
diffused
across
not
investigated
thoroughly.
Therefore,
we
global
local
of
Indian
using
double
digest
restriction-site
associated
DNA
sequencing
data.
Principal
component
analysis,
admixture
dating,
three
population
tests
revealed
with
statistical
significance
is
a
unique
population.
Hence,
hypothesis
crossbreed
between
supported
by
findings.
noticed
some
individuals
Mehsana,
6
out
15,
were
admixed
having
41%
Murrah-specific
11%
Surti-specific
ancestry.
Local
post-admixture
selection
signatures
(PASS)
PASS
genome,
is,
on
Bubalus
bubalis
autosomes
(BBA),
1-23
linked
BBA,
24
Murrah.
Interestingly,
upon
functional
enrichment
signatures,
several
adaptation-related
genes
pathways
ascertained
Surti,
while
Murrah-derived
regions
featured
involved
fatty
acid
synthesis
(Acyl-CoA
Synthetase
Short-Chain
Family
Member
2
(ACSS2))
milk
production.
Based
infer
introgression
genome
into
happened
recent
times
ancient
generations.
The
finding
an
independent
highlights
importance
recognizing
distinct
genetic
lineages
domesticated
species.
This
implications
for
reevaluating
origins
uniqueness
other
livestock
often
assumed
be
hybrids.
Practically,
findings
open
up
new
avenues
selective
breeding
preserve
traits
such
as
disease
resistance,
adaptability,
production
efficiency.
Further
studies
larger
samples
called
for.
Язык: Английский
YENİÇAĞDA OMİK BİLİMLER
Veteriner Farmakoloji ve Toksikoloji Derneği Bülteni,
Год журнала:
2024,
Номер
15(2), С. 77 - 85
Опубликована: Авг. 30, 2024
Teknolojik
gelişmelerin
sonucunda
ortaya
çıkan
OMİK
bilimleri,
biyolojik
sistemlerin
yapı
ve
işlevselliğinin
büyük
ölçekli
veriler
aracılığıyla
araştırılmasına
analiz
edilmesine
olanak
sağlamaktadır.
Genomik,
transkriptomik,
proteomik
metabolomik
bilimleri
içeren
omik
hiyerarşik
olarak
aşağıdan
yukarıya
bir
yaklaşım
kullanarak
incelenmesine
analizine
tanır.
Genetik
hayvan
ıslahındaki
ilerlemeler,
genomik
bilginin
çeşitli
seleksiyon
süreçlerinde
kullanılmasını
kolaylaştırmıştır.
Ayrıca,
teknik
kullanılması
ile
çok
miktarda
verinin
verimli
şekilde
ele
alınması
edilmesi,
hayvancılık
işletmeleri
çiftçilerin
karşılaştıkları
zorlukları
yönetmelerine
yardımcı
olmak
açısından
önemlidir.
Bu
özel
çerçeve
içerisinde,
kapsamlı
veya
karmaşık
ölçüm
araçlarının
kullanılmasının
sonucu
yeni
fenotipler
çıkmaktadır.
Hayvan
ıslahında
karakterlerin
kökenleri
genetik
yapısı
hakkında
bilgi
edinmek,
hayvancılığın
uzun
vadeli
sürdürülebilirliği
için
önem
arz
etmektedir.
fenotiplere
öncelik
vererek
refahıyla
uyumlu
sürdürülebilir
yetiştirme
uygulamalarını
teşvik
etmede
önemli
rol
üstlenerek
iklimde
değişikliklerin
meydana
geldiği
bu
yeniçağda
yetiştirmedeki
çözme
kapasitesi
derleme,
bilimlerine
potansiyel
uygulamalarına
genel
bakış
sunmayı
amaçlamaktadır.
Comparative genomic analysis and characterization of novel high-quality draft genomes from the coal metagenome
World Journal of Microbiology and Biotechnology,
Год журнала:
2024,
Номер
40(12)
Опубликована: Ноя. 1, 2024
Язык: Английский
Comparative Analysis of Runs of Homozygosity Islands in Indigenous and Commercial Chickens Revealed Candidate Loci for Disease Resistance and Production Traits
Veterinary Medicine and Science,
Год журнала:
2024,
Номер
11(1)
Опубликована: Дек. 10, 2024
Runs
of
homozygosity
(ROH)
are
contiguous
stretches
identical
genomic
regions
inherited
from
both
parents.
Assessment
ROH
in
livestock
species
contributes
significantly
to
our
understanding
genetic
health,
population
structure,
selective
pressure
and
conservation
efforts.
In
this
study,
whole
genome
re-sequencing
data
140
birds
10
Iranian
indigenous
chicken
ecotypes,
3
commercial
breeds
1
red
junglefowl
(RJF)
were
used
investigate
their
characteristics
(length
frequency)
inbreeding
coefficients
(F
Язык: Английский