Beyond guides, protocols and acronyms: Adoption of good modelling practices depends on challenging academia's status quo in ecology DOI Creative Commons
Tatiane Micheletti, Marie‐Christin Wimmler, Uta Berger

и другие.

Ecological Modelling, Год журнала: 2024, Номер 496, С. 110829 - 110829

Опубликована: Авг. 17, 2024

Язык: Английский

Towards reusable building blocks for agent-based modelling and theory development DOI Creative Commons
Uta Berger, Andrew Reid Bell, C. Michael Barton

и другие.

Environmental Modelling & Software, Год журнала: 2024, Номер 175, С. 106003 - 106003

Опубликована: Март 3, 2024

Despite the increasing use of standards for documenting and testing agent-based models (ABMs) sharing open access code, most ABMs are still developed from scratch. This is not only inefficient, but also leads to ad hoc often inconsistent implementations same theories in computational code delays progress exploration functioning complex social-ecological systems (SES). We argue that reusable building blocks (RBBs) known professional software development can mitigate these issues. An RBB a submodel represents particular mechanism or process relevant across many an application domain, such as plant competition vegetation models, reinforcement learning behavioural model. RBBs need be distinguished modules, which represent entire subsystems include more than one process. While linking modules faces challenges integrating different general, "atomic" enough easily re-used contexts. describe provide examples domains how why used development, benefits doing so ABM community individual modellers. propose template guide publication example this template. Most importantly, we initiate strategy community-based RBBs. Individual modellers have much greater impact their field with single paper, while will benefit increased coherence, facilitating theory both behaviour agents they form. invite peers upload share via our website - preferably referenced by DOI (digital object identifier obtained e.g. Zenodo). After critical mass candidate has accumulated, feedback discussion take place scope envisioned platform improved.

Язык: Английский

Процитировано

10

Modelling the dynamics of soil moisture and soil water salinity in tropical saltmarshes DOI Creative Commons
Ronny Peters,

Ângela Cristina Alves Reis,

Ulf Mehlig

и другие.

Ecological Modelling, Год журнала: 2025, Номер 504, С. 111089 - 111089

Опубликована: Март 13, 2025

Язык: Английский

Процитировано

1

Theory for and from agent-based modelling: Insights from a virtual special issue and a vision DOI Creative Commons
Volker Grimm, Uta Berger, Matthias Meyer

и другие.

Environmental Modelling & Software, Год журнала: 2024, Номер 178, С. 106088 - 106088

Опубликована: Май 21, 2024

The Virtual Special Issue "Agents for Theory" discusses theory development using agent-based models (ABMs). six contributions focus on how the word "theory" is used in ABM literature, reviews of ABMs should be conducted to gain general insights, even conceptualisation can help transform heuristic theories into scientific ones, context-dependent choice decision better justified, reusable building blocks (RBBs) could support development, and a modular framework RBBs identify solutions. Overall, making that go system dynamics come out are interrelated, so micro-macro perspective attempt reproduce patterns at both levels simultaneously way forward. Theory requires clearer communication common language, reference patterns, more detailed model analysis testing.

Язык: Английский

Процитировано

5

MANG@COAST: A SPATIO-TEMPORAL MODELING APPROACH OF MUDDY SHORELINE MOBILITY BASED ON MANGROVE MONITORING DOI Creative Commons

Paul-Emile Augusseau,

Christophe Proisy, Antoine Gardel

и другие.

Environmental Modelling & Software, Год журнала: 2025, Номер unknown, С. 106345 - 106345

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

0

PlotToSat: A tool for generating time-series signatures from Sentinel-1 and Sentinel-2 at field-based plots for machine learning applications DOI Creative Commons
Milto Miltiadou, Stuart M. Grieve, Paloma Ruiz‐Benito

и другие.

Environmental Modelling & Software, Год журнала: 2025, Номер unknown, С. 106395 - 106395

Опубликована: Март 1, 2025

Язык: Английский

Процитировано

0

Using the ODD protocol and NetLogo to replicate agent-based models DOI Creative Commons
Volker Grimm, Uta Berger, Justin M. Calabrese

и другие.

Ecological Modelling, Год журнала: 2024, Номер 501, С. 110967 - 110967

Опубликована: Дек. 6, 2024

Язык: Английский

Процитировано

2

How root-grafted trees form networks: Modeling network dynamics with pyNET DOI Creative Commons
Marie‐Christin Wimmler, Uta Berger

Ecological Modelling, Год журнала: 2024, Номер 498, С. 110916 - 110916

Опубликована: Окт. 22, 2024

Язык: Английский

Процитировано

1

Beyond guides, protocols and acronyms: Adoption of good modelling practices depends on challenging academia's status quo in ecology DOI Creative Commons
Tatiane Micheletti, Marie‐Christin Wimmler, Uta Berger

и другие.

Ecological Modelling, Год журнала: 2024, Номер 496, С. 110829 - 110829

Опубликована: Авг. 17, 2024

Язык: Английский

Процитировано

0