Global Biogeography of Prokaryotes in Mangrove Sediments: Spatial Patterns and Ecological Insights from 16S rDNA Metabarcoding DOI Open Access

Emma Jamon-Haon,

Philippe Cuny, Anna Rita Rossi

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 20, 2024

Abstract The global asymmetry in the floristic diversity distribution within mangrove ecosystems is well-documented. However, sediment microbial communities, which play crucial ecological roles, are often overlooked biogeography studies. This study aimed to investigate diversity, composition, and of prokaryotic communities across distinct bioregions (12 countries territories from Caribbean bioregion, Southeast America, East Africa, Indo-Malaysia Australasia). We conducted a meta-analysis by compiling 16S rDNA datasets 17 previous studies (540 samples) over six year period (2014-2020) applied community ecology analyses combined with random forest models. Although no significant correlation was observed between tree richness hotspot identified Indo-West Pacific region. Microbiota associated different mangroves displayed opposite latitudinal gradients beta-dispersions. Distance-decay relationships were weak but statistically significant. Random models key taxa, OTUs shared all suggested presence potential core microbiota. Taxonomic statistical underscored great heterogeneity microbiota heavily influenced (e.g., molecular bioinformatic methodologies). Future research on microbiome would benefit standardized sampling sequencing methods. Despite current limitations, distance-decay relationship confirmed influence dispersal barriers for also suggests that environmental factors, rather than plant alone, may prominent role shaping composition sediments.

Язык: Английский

Distribution of microbial taxa and genes degrading halogenated organic pollutants in the mangroves DOI
Fei Yu, Yuyang Li, Shanshan Meng

и другие.

Journal of Hazardous Materials, Год журнала: 2025, Номер 487, С. 137145 - 137145

Опубликована: Янв. 7, 2025

Язык: Английский

Процитировано

0

The impact of organic loading rate on the cultivation and stability of aerobic granular sludge in continuous flow reactor DOI
Yingjian Zhang,

Fanchao Meng,

Zehan Huang

и другие.

International Biodeterioration & Biodegradation, Год журнала: 2025, Номер 198, С. 106016 - 106016

Опубликована: Фев. 1, 2025

Язык: Английский

Процитировано

0

The biodegradation pathway of HBCDs in the enriched microbial community DOI
Bing Zhang, Wenqi Luo,

Yongjin Liu

и другие.

International Biodeterioration & Biodegradation, Год журнала: 2025, Номер 201, С. 106061 - 106061

Опубликована: Март 12, 2025

Язык: Английский

Процитировано

0

Future Perspectives on the Application of the Oxford Nanopore® MinION™ Sequencer in Cultural Heritage Biodeterioration Studies DOI Open Access
João Trovão, Fabiana Soares

Опубликована: Июнь 21, 2024

The present work provides an updated overview of the application Oxford Nanopore® MinION™ sequencer in cultural heritage biodeterioration studies, while also providing a holistic discussion possible future perspectives for their utilization this research field. Due to peculiar characteristics device, last few years have seen steady rise on system variety materials, having been useful understand microbial biodeteriogens diversity and some metabolic biodeteriogenic features. Considering immense potential system, manuscript discusses further possibilities technique aiming help critical questions area. Its various differential contexts, has opened doors putative usage other interesting sub-areas worthy investigations, including: genome transcriptome analysis, metatranscriptomics, biodeteriorative metabolism inter intra kingdom interactions resistome profiling, object history context situ applications, bioprospecting biotechnology.

Язык: Английский

Процитировано

1

Future Perspectives on the Application of the Oxford Nanopore® MinION™ Sequencer in Cultural Heritage Biodeterioration Studies DOI Open Access
João Trovão, Fabiana Soares

Опубликована: Июль 15, 2024

The present work provides an updated overview of the application Oxford Nanopore® MinION™ sequencer in cultural heritage biodeterioration studies, while also providing a holistic discussion possible future perspectives for their utilization this research field. Due to peculiar characteristics device, last few years have seen steady rise on system variety materials, having been useful understand microbial biodeteriogens diversity and some metabolic biodeteriogenic features. Considering immense potential system, manuscript discusses further possibilities technique aiming help critical questions area. Its various differential contexts, has opened doors putative usage other interesting sub-areas worthy investigations, including: genome transcriptome analysis, metatranscriptomics, biodeteriorative metabolism inter intra kingdom interactions resistome profiling, object history context situ applications, bioprospecting biotechnology.

Язык: Английский

Процитировано

1

Specialists regulate microbial network and community assembly in subtropical seagrass sediments under differing land use conditions DOI
Weiguo Zhou, Xiaomei Shen, Zhimeng Xu

и другие.

Journal of Environmental Management, Год журнала: 2024, Номер 370, С. 122486 - 122486

Опубликована: Сен. 14, 2024

Язык: Английский

Процитировано

1

Temporal dynamics of the bacterial community structure and functions associated with marine sponges collected off Karah Island, Terengganu, Malaysia DOI Creative Commons
Yuki Hayami, Logajothiswaran Ambalavanan, Sandra Catherine Zainathan

и другие.

The Microbe, Год журнала: 2024, Номер 5, С. 100202 - 100202

Опубликована: Ноя. 10, 2024

Язык: Английский

Процитировано

1

Dynamics of plastisphere microbial communities in mangrove sediments and their potential impact on N-cycling DOI

Ruzhen Liu,

Zhichao Wang,

Minghuang Ling

и другие.

International Biodeterioration & Biodegradation, Год журнала: 2024, Номер 196, С. 105929 - 105929

Опубликована: Сен. 26, 2024

Язык: Английский

Процитировано

0

Global Biogeography of Prokaryotes in Mangrove Sediments: Spatial Patterns and Ecological Insights from 16S rDNA Metabarcoding DOI Open Access

Emma Jamon-Haon,

Philippe Cuny, Anna Rita Rossi

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 20, 2024

Abstract The global asymmetry in the floristic diversity distribution within mangrove ecosystems is well-documented. However, sediment microbial communities, which play crucial ecological roles, are often overlooked biogeography studies. This study aimed to investigate diversity, composition, and of prokaryotic communities across distinct bioregions (12 countries territories from Caribbean bioregion, Southeast America, East Africa, Indo-Malaysia Australasia). We conducted a meta-analysis by compiling 16S rDNA datasets 17 previous studies (540 samples) over six year period (2014-2020) applied community ecology analyses combined with random forest models. Although no significant correlation was observed between tree richness hotspot identified Indo-West Pacific region. Microbiota associated different mangroves displayed opposite latitudinal gradients beta-dispersions. Distance-decay relationships were weak but statistically significant. Random models key taxa, OTUs shared all suggested presence potential core microbiota. Taxonomic statistical underscored great heterogeneity microbiota heavily influenced (e.g., molecular bioinformatic methodologies). Future research on microbiome would benefit standardized sampling sequencing methods. Despite current limitations, distance-decay relationship confirmed influence dispersal barriers for also suggests that environmental factors, rather than plant alone, may prominent role shaping composition sediments.

Язык: Английский

Процитировано

0