Transcription factors form a ternary complex with NIPBL/MAU2 to localize cohesin at enhancers DOI Creative Commons
Grégory Fettweis, Kaustubh Wagh, Diana A. Stavreva

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 9, 2024

SUMMARY While the cohesin complex is a key player in genome architecture, how it localizes to specific chromatin sites not understood. Recently, we and others have proposed that direct interactions with transcription factors lead localization of cohesin-loader (NIPBL/MAU2) within enhancers. Here, identify two clusters LxxLL motifs NIPBL sequence regulate dynamics, interactome, NIPBL-dependent transcriptional programs. One these interacts MAU2 necessary for maintenance NIPBL-MAU2 heterodimer. The second cluster binds specifically ligand-binding domains steroid receptors. For glucocorticoid receptor (GR), examine detail its interaction surfaces MAU2. Using AlphaFold2 molecular docking algorithms, uncover GR-NIPBL-MAU2 ternary describe importance GR-dependent gene regulation. Finally, show multiple interact NIPBL-MAU2, likely using interfaces other than those characterized GR.

Язык: Английский

The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor DOI Creative Commons
Thomas A. Johnson, Grégory Fettweis, Kaustubh Wagh

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2024, Номер 121(47)

Опубликована: Ноя. 14, 2024

The glucocorticoid and mineralocorticoid receptors (GR MR, respectively) have distinct, yet overlapping physiological pathophysiological functions. There are indications that both interact functionally physically, but the precise role of this interdependence is poorly understood. Here, we analyzed impact GR coexpression on MR genome-wide transcriptional responses chromatin binding upon activation by aldosterone glucocorticoids, ligands receptor. Transcriptional in absence result fewer regulated genes. In contrast, potentiates MR-mediated transcription, particularly response to aldosterone, cell lines more physiologically relevant model mouse colon organoids. altered a locus- ligand-specific way. Single-molecule tracking suggests presence contributes productive MR/aldosterone complexes chromatin. Together, our data indicate aldosterone-mediated activity, even glucocorticoids.

Язык: Английский

Процитировано

7

The plusses and minuses of DNA torsion DOI Creative Commons
Steven Henikoff, David Levens

eLife, Год журнала: 2025, Номер 14

Опубликована: Март 3, 2025

A new method for mapping torsion provides insights into the ways that genome responds to generated by RNA polymerase II.

Язык: Английский

Процитировано

0

Identification of Epigenetic Regulators of Fibrotic Transformation in Cardiac Fibroblasts Through Bulk and Single-Cell CRISPR Screens DOI
Laura Pilar Aguado‐Alvaro,

Nerea Garitano,

Wolfgang Esser‐Skala

и другие.

Опубликована: Апрель 23, 2025

Cardiac fibrosis is mediated by the persistent activity of myofibroblasts, which differentiate from resident cardiac fibroblasts in response to tissue damage and stress signals. The signaling pathways transcription factors regulating fibrotic transformation have been thoroughly studied. In contrast, roles chromatin myofibroblast differentiation their contribution pathogenic remain poorly understood. Here, we combined bulk single-cell CRISPR screens characterize primary fibroblasts. We uncover strong regulators states including Srcap Kat5 remodelers. confirm that these are required for functional processes underlying collagen synthesis cell contractility. Using profiling perturbed fibroblasts, demonstrate pro-fibrotic complexes facilitate well-characterized factors. Finally, show KAT5 inhibition alleviates responses patient-derived human

Язык: Английский

Процитировано

0

Rethinking chromatin accessibility: from compaction to dynamic interactions DOI Creative Commons

Tom Fillot,

Davide Mazza

Current Opinion in Genetics & Development, Год журнала: 2024, Номер 90, С. 102299 - 102299

Опубликована: Дек. 19, 2024

Язык: Английский

Процитировано

1

Hallmarks of glucocorticoid receptor condensates involvement in transcription regulation DOI Creative Commons

Belén Benítez,

Martín Stortz,

Marí­a Cecilia De Rossi

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Ноя. 15, 2024

Abstract Several proteins necessary for mRNA production concentrate in intranuclear condensates, which are proposed to affect transcriptional output. The glucocorticoid receptor (GR) is a ligand-activated transcription factor that regulates the expression of hundreds genes relevant many physiological and pathological processes. As with all members steroid family, GR forms condensates unknown function. Here, we examine whether involved regulation using Airyscan super-resolution microscopy nano-antibodies targeting initiation elongating states RNA polymerase II (Pol2). We observed subpopulations colocalizing initiating and, surprisingly, Pol2 foci. analysis mutants different outputs suggests correlation between condensate formation capability initiation. Moreover, number molecules within elongation appears be linked activity. Taken together, our data an involvement elongation.

Язык: Английский

Процитировано

0

Transcription factors form a ternary complex with NIPBL/MAU2 to localize cohesin at enhancers DOI Creative Commons
Grégory Fettweis, Kaustubh Wagh, Diana A. Stavreva

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 9, 2024

SUMMARY While the cohesin complex is a key player in genome architecture, how it localizes to specific chromatin sites not understood. Recently, we and others have proposed that direct interactions with transcription factors lead localization of cohesin-loader (NIPBL/MAU2) within enhancers. Here, identify two clusters LxxLL motifs NIPBL sequence regulate dynamics, interactome, NIPBL-dependent transcriptional programs. One these interacts MAU2 necessary for maintenance NIPBL-MAU2 heterodimer. The second cluster binds specifically ligand-binding domains steroid receptors. For glucocorticoid receptor (GR), examine detail its interaction surfaces MAU2. Using AlphaFold2 molecular docking algorithms, uncover GR-NIPBL-MAU2 ternary describe importance GR-dependent gene regulation. Finally, show multiple interact NIPBL-MAU2, likely using interfaces other than those characterized GR.

Язык: Английский

Процитировано

0