Journal of Plant Growth Regulation, Год журнала: 2024, Номер unknown
Опубликована: Сен. 25, 2024
Язык: Английский
Journal of Experimental Botany, Год журнала: 2022, Номер 74(7), С. 2364 - 2373
Опубликована: Дек. 23, 2022
Abstract Long non-coding RNAs (lncRNAs) are a group of greater than 200 nucleotides in length exhibiting low or no coding potential that involved diverse biological functions through their molecular interaction with proteins, DNA, other RNAs. With the emergence advanced high-throughput RNA sequencing technologies, tens thousands novel long have been identified plant transcriptomes last decade. More importantly, functional studies revealed several lncRNAs play key regulatory roles development and stress responses. In this review, we focus on summarizing recent progress uncovering mechanisms during life cycle, briefly discuss possible biotechnological applications for breeding.
Язык: Английский
Процитировано
21
The EMBO Journal, Год журнала: 2023, Номер 42(20)
Опубликована: Сен. 21, 2023
Язык: Английский
Процитировано
13
Scientific Reports, Год журнала: 2022, Номер 12(1)
Опубликована: Авг. 18, 2022
Abstract Long non-coding RNAs (lncRNAs) are a prominent class of eukaryotic regulatory genes. Despite the numerous available transcriptomic datasets, annotation plant lncRNAs remains based on dated annotations that have been historically carried over. We present substantially improved Arabidopsis thaliana lncRNAs, generated by integrating 224 transcriptomes in multiple tissues, conditions, and developmental stages. annotate 6764 lncRNA genes, including 3772 novel. characterize their tissue expression patterns find 1425 co-expressed with coding enriched functional categories such as chloroplast organization, photosynthesis, RNA regulation, transcription, root development. This transcription-guided constitutes valuable resource for studying biological processes they may regulate.
Язык: Английский
Процитировано
17
Elsevier eBooks, Год журнала: 2025, Номер unknown, С. 163 - 186
Опубликована: Янв. 1, 2025
Язык: Английский
Процитировано
0
Опубликована: Янв. 1, 2025
Язык: Английский
Процитировано
0
Опубликована: Май 9, 2025
Язык: Английский
Процитировано
0
Journal of Integrative Plant Biology, Год журнала: 2022, Номер 64(12), С. 2290 - 2308
Опубликована: Дек. 1, 2022
Abstract The development of plants is largely dependent on their growth environment. To better adapt to a particular habitat, have evolved various subtle regulatory mechanisms for altering gene expression. N c oding RNA s (ncRNAs) constitute major portion the transcriptomes eukaryotes. Various ncRNAs been recognized as important regulators expression genes involved in essential biological processes throughout whole life cycles plants. In this review, we summarize current understanding biogenesis and contributions mall n ucle o lar (snoRNA)‐ l ong (lncRNA)‐mediated regulation plant environmental responses. Many appear be associated with increased yield, quality disease resistance species cultivars. These may potentially used genetic resources improving agronomic traits molecular breeding. challenges ncRNA biology possibilities make use these valuable future are discussed review.
Язык: Английский
Процитировано
15
PLANT PHYSIOLOGY, Год журнала: 2024, Номер 196(2), С. 697 - 710
Опубликована: Июнь 12, 2024
Abstract The roots of plants play multiple functions that are essential for growth and development, including anchoring to the soil as well water nutrient acquisition. These underground organs exhibit plasticity modify their root system architecture in response environmental cues, allowing adaptation change availability. In addition, enter mutualistic interactions with microorganisms, example, nodule symbiosis (RNS) established between a limited group nitrogen-fixing bacteria arbuscular mycorrhiza involving most land fungi Glomeromycetes phylum. past 20 years, genetic approaches allowed identification functional characterization genes required specific programs nodule, symbioses. studies provided evidence program RNS recruited components developmental programs. execution these is strongly influenced by epigenetic changes—DNA methylation histone post-translational modifications—that alter chromatin conformation modifying expression key genes. this review, we summarize recent advances highlight how DNA modifications, remodeling factors long noncoding RNAs, shape allow successful establishment both We anticipate analysis dynamic changes 3D structure single cells or tissue types will illuminate our understanding symbiotic orchestrated, opening exciting questions new perspectives modulate agronomical ecological traits linked
Язык: Английский
Процитировано
3
Plant and Cell Physiology, Год журнала: 2024, Номер 65(9), С. 1486 - 1493
Опубликована: Июль 17, 2024
Abstract CANTATAdb 3.0 is an updated database of plant long non-coding RNAs (lncRNAs), containing 571,688 lncRNAs identified across 108 species, including 100 Magnoliopsida (flowering plants), a significant expansion from the previous version. A notable feature inclusion 112,980 that are expressed specifically in certain organs or embryos, indicating their potential role development and organ-specific processes. In addition, includes 74,886 pairs evolutionarily conserved found 47 species inferred genome–genome alignments as well obtained using similarity search approach 5,479 pairs, which would further aid selection for functional studies. Interestingly, we find with tissue-specific expression patterns tend to occupy same organ different pointing toward biological roles. The now offers extended capabilities downloadable data popular formats, facilitating research on lncRNAs.
Язык: Английский
Процитировано
3
Computational and Structural Biotechnology Journal, Год журнала: 2023, Номер 21, С. 1989 - 1994
Опубликована: Янв. 1, 2023
Long non-coding RNAs (lncRNAs) have been verified as flexible and important factors in various biological processes of multicellular eukaryotes, including plants. The respective intricate crosstalk among multiple epigenetic modifications has examined to some extent. However, only a small proportion lncRNAs functionally well characterized. Moreover, the relationship between other not systematically studied. In this mini-review, we briefly summarize representative functions developmental programs environmental responses addition, particularly discuss intimate modifications, outline underlying avenues challenges for future research on plant lncRNAs.
Язык: Английский
Процитировано
6