bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Янв. 15, 2024
Abstract
The
large
number
of
different
analytical
choices
researchers
use
may
be
partly
responsible
for
the
replication
challenge
in
neuroimaging
studies.
For
robustness
analysis,
knowledge
full
space
options
is
essential.
We
conducted
a
systematic
literature
review
to
identify
decisions
functional
data
preprocessing
and
analysis
emerging
field
cognitive
network
neuroscience.
found
61
steps,
with
17
them
having
debatable
options.
Scrubbing,
global
signal
regression,
spatial
smoothing
are
among
controversial
steps.
There
no
standardized
order
which
steps
applied,
within
several
vary
widely
across
By
aggregating
pipelines
studies,
we
propose
three
taxonomic
levels
categorize
choices:
1)
inclusion
or
exclusion
specific
2)
distinct
sequencing
3)
parameter
tuning
To
facilitate
access
data,
developed
decision
support
app
high
educational
value
called
METEOR,
allows
explore
as
reference
well-informed
(multiverse)
analysis.
Highlights
Data
variability
hinders
replicability.
Analysis
multiple
defensible
examines
results.
identified
102
performing
graph-fMRI
Interactive
visualization
these
available
Shiny
app.
Journal of Affective Disorders,
Год журнала:
2024,
Номер
359, С. 140 - 144
Опубликована: Май 14, 2024
Depressive
symptoms
are
highly
prevalent,
present
in
heterogeneous
symptom
patterns,
and
share
diverse
neurobiological
underpinnings.
Understanding
the
links
between
psychopathological
biological
factors
is
critical
elucidating
its
etiology
persistence.
We
aimed
to
evaluate
utility
of
using
symptom-brain
networks
parse
heterogeneity
depressive
complaints
a
large
adolescent
sample.
used
data
from
third
wave
IMAGEN
study,
multi-center
panel
cohort
study
involving
1317
adolescents
(52.49
%
female,
mean
±
SD
age
=
18.5
0.72).
Two
network
models
were
estimated:
one
including
an
overall
severity
sum
score
based
on
Adolescent
Depression
Rating
Scale
(ADRS),
incorporating
individual
ADRS
symptom/item
scores.
Both
included
measures
cortical
thickness
several
regions
(insula,
cingulate,
mOFC,
fusiform
gyrus)
hippocampal
volume
derived
neuroimaging.
The
scores
revealed
associations
specific
complaints,
obscured
when
aggregate
depression
score.
Notably,
insula's
showed
negative
with
cognitive
dysfunction
(partial
cor.
−0.15);
cingulate's
feelings
worthlessness
−0.10),
mOFC
was
negatively
associated
anhedonia
−0.05).
This
cross-sectional
relied
self-reported
assessment
non-clinical
sample
predominantly
healthy
participants
(19
or
sub-threshold
depression).
showcases
parsing
linking
neural
substrates.
outline
next
steps
integrate
markers
unravel
MDD's
phenotypic
heterogeneity.
Neuroscience & Biobehavioral Reviews,
Год журнала:
2024,
Номер
165, С. 105846 - 105846
Опубликована: Авг. 6, 2024
The
large
number
of
different
analytical
choices
used
by
researchers
is
partly
responsible
for
the
challenge
replication
in
neuroimaging
studies.
For
an
exhaustive
robustness
analysis,
knowledge
full
space
options
essential.
We
conducted
a
systematic
literature
review
to
identify
decisions
functional
data
preprocessing
and
analysis
emerging
field
cognitive
network
neuroscience.
found
61
steps,
with
17
them
having
debatable
parameter
choices.
Scrubbing,
global
signal
regression,
spatial
smoothing
are
among
controversial
steps.
There
no
standardized
order
which
steps
applied,
settings
within
several
vary
widely
across
By
aggregating
pipelines
studies,
we
propose
three
taxonomic
levels
categorize
choices:
1)
inclusion
or
exclusion
specific
2)
tuning
3)
distinct
sequencing
have
developed
decision
support
application
high
educational
value
called
METEOR
facilitate
access
design
well-informed
(multiverse)
analysis.
Cell Reports Methods,
Год журнала:
2024,
Номер
4(11), С. 100901 - 100901
Опубликована: Ноя. 1, 2024
MotivationMicroelectrode
array
(MEA)
recordings
of
neuronal
activity
are
an
essential
functional
assay
for
evaluating
in
vitro
models
neurodevelopment
and
neurological
diseases.
However,
most
studies
limited
to
comparing
firing
burst
rates.
We
have
previously
shown
that
3D
human
cerebral
organoids
develop
microscale
networks.
The
network-level
features,
which
predict
cellular-scale
information
processing
efficiency,
can
provide
a
bioinformatic
phenotype
network
function
MEA
from
tissues.
Broader
application
connectivity,
topology,
dynamics
analysis
2D
human-derived
or
murine
cultures
could
advance
mechanistic
therapeutic
studies,
particularly
disease
models.
Our
user-friendly,
open-source
pipeline,
MEA-NAP,
addresses
current
gap
computational
tools
studying
function.Highlights•MEA-NAP
identifies
features
microelectrode
recordings•We
use
MEA-NAP
track
development
mouse
cultures•Human
iPSC-derived
cultured
neural
networks
increase
size
density•MEA-NAP
reveals
developing
hub
roles
with
node
cartographySummaryMicroelectrode
commonly
used
compare
rates
cultures.
also
reveal
dynamics—patterns
seen
brain
across
spatial
scales.
Network
topology
is
frequently
characterized
neuroimaging
graph
theoretical
metrics.
few
exist
analyzing
recordings.
Here,
we
present
MATLAB
pipeline
(MEA-NAP)
raw
voltage
time
series
acquired
single-
multi-well
MEAs.
Applications
differences
development,
including
cartography,
dimensionality.
incorporates
multi-unit
template-based
spike
detection,
probabilistic
thresholding
determining
significant
connections,
normalization
techniques
identify
effects
pharmacologic
perturbation
and/or
disease-causing
mutations
thus
translational
platform
revealing
insights
screening
new
approaches.Video
abstract/cms/asset/e47b5239-ccd6-47f5-a237-7695cd7c579a/mmc2.mp4Loading
...Download
video
(mp4,
292
MB)Graphical
abstract
International Journal of Training and Development,
Год журнала:
2025,
Номер
unknown
Опубликована: Фев. 4, 2025
ABSTRACT
Transfer
beliefs
are
understudied
in
the
training
transfer
field,
whereas
structural
equation
modelling
(SEM)
has
been
a
widely
used
technique
to
study
models.
New
methodologies
needed
and
network
analysis
(NA)
emerged
as
new
approach
that
provides
visual
representation
of
given
network.
We
explored
relation
beliefs,
intentions,
commitment,
implementation
using
variable
person‐oriented
approaches
according
groups
trainees
based
on
their
readiness.
The
longitudinal
design
measured
T1
before
T2
after
(268
participants).
trainees'
about
transfer,
commitment
intention
transfer;
self‐reported
actions.
results
NA
confirmed
structure
exploratory
factor
analysis.
model
offered
complimentary
obtained
via
SEM.
Differentiating
SEM
multigroup
by
cluster
showed
differences
models
architectures
between
clusters.
discussed
relations
also
implications
combined
use
novel
transfer.
Journal of Neural Transmission,
Год журнала:
2025,
Номер
unknown
Опубликована: Фев. 15, 2025
Anhedonia
is
a
core
transnosographic
symptom
in
several
neuropsychiatric
disorders.
Recently,
the
Triple
Network
(TN)
model
has
been
proposed
as
useful
neurophysiological
paradigm
for
conceptualizing
anhedonia,
providing
new
insights
to
clinicians
and
researchers.
Despite
this,
relationship
between
functional
dynamics
of
TN
severity
anhedonia
relatively
understudied
non-clinical
samples,
especially
resting
state
(RS)
condition.
Therefore,
current
study,
we
investigated
this
using
electroencephalography
(EEG)
connectivity.
Eighty-two
participants
(36
males;
mean
age:
24.28
±
7.35
years)
underwent
RS
EEG
recording
with
eyes-closed
completed
Beck
Depression
Inventory-derived
4-item
scale
(BDI-Anh4)
Brief
Symptoms
Inventory
(BSI).
data
on
connectivity
were
analyzed
exact
low-resolution
electromagnetic
tomography
(eLORETA).
A
significant
positive
correlation
was
observed
BDI-Anh4
total
score
salience-default
mode
network
beta
frequency
band
(r
=
0.409;
p
0.010).
The
results
hierarchical
linear
regression
analysis
also
showed
that
pattern
positively
independently
associated
(β
0.358;
<
0.001)
explained
an
additional
11%
variability.
association
increased
synchronization
detected
study
may
reflect
difficulty
disengaging
from
internal/self-related
mental
contents,
which
consequently
impairs
processing
other
stimuli,
including
rewarding
stimuli.
NeuroImage Clinical,
Год журнала:
2025,
Номер
unknown, С. 103785 - 103785
Опубликована: Апрель 1, 2025
Understanding
complex
brain-behaviour
relationships
in
psychiatric
and
neurological
conditions
is
crucial
for
advancing
clinical
insights.
This
review
explores
the
current
landscape
of
network
estimation
methods
context
functional
MRI
(fMRI)
based
neuroscience,
focusing
on
static
undirected
analysis.
We
focused
papers
published
a
single
year
(2022)
characterised
what
we
consider
fundamental
building
blocks
analysis:
sample
size,
association
type,
edge
inclusion
strategy,
weights,
modelling
level,
confounding
factors.
found
that
most
common
across
all
included
studies
(n
=
191)
were
use
pairwise
correlations
to
estimate
associations
between
brain
regions
(79.6
%),
weighted
networks
(95.3
at
individual
level
(86.9
%).
Importantly,
substantial
number
lacked
comprehensive
reporting
their
methodological
choices,
hindering
synthesis
research
findings
within
field.
underscores
critical
need
careful
consideration
transparent
fMRI
methodologies
advance
our
understanding
relationships.
By
facilitating
integration
neuroscience
psychometrics,
aim
significantly
enhance
these
intricate
connections.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2025,
Номер
unknown
Опубликована: Апрель 18, 2025
Abstract
Background.
Major
Depressive
Disorder
(MDD)
is
a
prevalent
psychiatric
disorder.
At
least
half
of
the
patients
who
recover
from
first
depressive
episode,
will
experience
relapse.
Therefore,
understanding
underlying
mechanisms
supporting
relapse
clinical
urgency
that
could
be
informed
by
studying
complex
brain-behavior
associations.
Here,
we
investigated
how
relationships
between
symptomatology
and
regional
brain
characteristics
differed
people
with
episode
vs
recurrent
depression.
Methods.
We
used
REST-meta-MDD
data
DIRECT
consortium.
focused
on
comparing
global
local
network
properties
(n=239)
(n=179)
on:
(i)
symptom
network,
(ii)
structural
(VBM)
functional
networks
(ALFF,
ReHO),
(iii)
integrated
symptoms
using
psychopathology
multimodal
approach.
Results.
Symptom
analysis
showed
high
values
strength
centrality
for
“Insomnia:
Early
Hours
Morning”
“General
somatic
symptoms”
at
recurrence
compared
to
episode.
Also,
differences
in
symptom-brain
(measured
ReHo
metric)
(S=2.09
p
=
0.042).
Finally,
found
edge
specific
links,
including
insomnia
symptoms-,
differ
recurrence.
Conclusions.
For
networks,
but
not
differentiated
MDD,
specially
stronger
relations
reflecting
integrity
(ReHO)
was
related
This
suggests
have
relevance
brain-symptom
underpinning