Unifying community-wide whole-brain imaging datasets enables robust automated neuron identification and reveals determinants of neuron positioning inC. elegans DOI Creative Commons
Daniel Sprague, Kevin Rusch, Raymond L. Dunn

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Апрель 30, 2024

We develop a data harmonization approach for

Язык: Английский

Aging disrupts the link between network centrality and functional properties of prefrontal neurons during memory-guided behavior DOI Creative Commons
Yadollah Ranjbar‐Slamloo,

Huee Ru Chong,

Tsukasa Kamigaki

и другие.

Communications Biology, Год журнала: 2025, Номер 8(1)

Опубликована: Янв. 16, 2025

The prefrontal cortex (PFC) is vital for higher cognitive functions and displays neuronal heterogeneity, with activity varying significantly across individual neurons. Using calcium imaging in the medial PFC (mPFC) of mice, we investigate whether differences degree centrality-a measure connectivity strength within local circuits-could explain this diversity its functional implications. In young adults, neurons high centrality, inferred from resting-state activity, exhibit reliable stable action-plan selectivity during memory-guided tasks, suggesting that closely linked to heterogeneity. This relationship, however, deteriorates middle-aged older mice. A computational model simulating age-related declines synaptic plasticity reproduces these results. centrality also predicts cross-modal selectivity, but predictive power diminishes age. Furthermore, are spatially clustered, a pattern fades aging. These findings reveal significant aging impact on network properties parallel spatial organization mPFC.

Язык: Английский

Процитировано

1

Exploring the role of dimensionality transformation in episodic memory DOI Creative Commons
Casper Kerrén, Daniel Reznik, Christian F. Doeller

и другие.

Trends in Cognitive Sciences, Год журнала: 2025, Номер unknown

Опубликована: Фев. 1, 2025

Episodic memory must accomplish two adversarial goals: encoding and storing a multitude of experiences without exceeding the finite neuronal structure brain, recalling memories in vivid detail. Dimensionality reduction expansion ('dimensionality transformation') enable brain to meet these demands. Reduction compresses sensory input into simplified, storable codes, while reconstructs details. Although processes are essential memory, their neural mechanisms for episodic remain unclear. Drawing on recent insights from cognitive psychology, systems neuroscience, neuroanatomy, we propose accounts how dimensionality transformation occurs brain: structurally (via corticohippocampal pathways) functionally (through oscillations). By examining cross-species evidence, highlight that may support identify crucial questions future research.

Язык: Английский

Процитировано

1

Decoding the brain: From neural representations to mechanistic models DOI Creative Commons
Mackenzie Weygandt Mathis, Adriana Perez Rotondo, Edward F. Chang

и другие.

Cell, Год журнала: 2024, Номер 187(21), С. 5814 - 5832

Опубликована: Окт. 1, 2024

Язык: Английский

Процитировано

7

Multiscale organization of neuronal activity unifies scale-dependent theories of brain function DOI
Brandon R. Munn, Eli J. Müller, Itia A. Favre‐Bulle

и другие.

Cell, Год журнала: 2024, Номер unknown

Опубликована: Окт. 1, 2024

Язык: Английский

Процитировано

4

Unifying community whole-brain imaging datasets enables robust neuron identification and reveals determinants of neuron position in C. elegans DOI Creative Commons
Daniel Sprague, Kevin Rusch, Raymond L. Dunn

и другие.

Cell Reports Methods, Год журнала: 2025, Номер unknown, С. 100964 - 100964

Опубликована: Янв. 1, 2025

Язык: Английский

Процитировано

0

Formation of brain-wide neural geometry during visual item recognition in monkeys DOI Creative Commons
He Chen, Jun Kunimatsu, Tomomichi Oya

и другие.

iScience, Год журнала: 2025, Номер 28(3), С. 111936 - 111936

Опубликована: Янв. 31, 2025

Neural dynamics are thought to reflect computations that relay and transform information in the brain. Previous studies have identified neural population many individual brain regions as a trajectory geometry, preserving common computational motif. However, whether these populations share particular geometric patterns across brain-wide remains unclear. Here, by mapping widely temporal/frontal/limbic cortical subcortical structures of monkeys, we show 10 populations, including 2,500 neurons, propagate visual item stochastic manner. We found inputs predominantly evoked rotational higher-order area, TE, its downstream striatum tail, while curvy/straight appeared frequently orbitofrontal/hippocampal network. These changes were not deterministic but rather according their respective emergence rates. Our meta-analysis results indicate propagates heterogeneous mixture signals

Язык: Английский

Процитировано

0

A Sensitive Soma-localized Red Fluorescent Calcium Indicator for Multi-Modality Imaging of Neuronal Populations In Vivo DOI Creative Commons
Shihao Zhou, Qiyu Zhu, Minho Eom

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2025, Номер unknown

Опубликована: Фев. 2, 2025

Abstract Recent advancements in genetically encoded calcium indicators, particularly those based on green fluorescent proteins, have optimized their performance for monitoring neuronal activities a variety of model organisms. However, progress developing red-shifted GECIs, despite advantages over has been slower, resulting fewer options end-users. In this study, we explored topological inversion and soma-targeting strategies, which are complementary to conventional mutagenesis, re-engineer red indicator, FRCaMP, enhanced vivo performance. The sensors, FRCaMPi soma-targeted (SomaFRCaMPi), exhibit up 2-fold higher dynamic range peak ΔF/F 0 per single AP compared widely used jRGECO1a neurons culture . Compared FRCaMPi, SomaFRCaMPi reduces erroneous correlation activity the brains mice zebrafish by two- four-fold due diminished neuropil contamination without compromising signal-to-noise ratio. Under wide-field imaging primary somatosensory visual cortex with high labeling density (80-90%), exhibits 40% SNR decreased artifactual across neurons. Altogether, improves accuracy scale at single-neuron resolution densely labeled brain tissues 2-3-fold automated segmentation, 50% fraction responsive cells, jRGECO1a. Our findings highlight potential SomaFRCaMPi, comparable most sensitive GCaMP, precise spatial recording populations using popular modalities organisms such as mice.

Язык: Английский

Процитировано

0

A vectorial code for semantics in human hippocampus DOI Open Access
Melissa Franch,

Elizabeth A. Mickiewicz,

James L. Belanger

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2025, Номер unknown

Опубликована: Фев. 23, 2025

ABSTRACT As we listen to speech, our brains actively compute the meaning of individual words. Inspired by success large language models (LLMs), hypothesized that brain employs vectorial coding principles, such is reflected in distributed activity single neurons. We recorded responses hundreds neurons human hippocampus, which has a well-established role semantic coding, while participants listened narrative speech. find encoding contextual word simultaneous whose selectivities span multiple unrelated categories. Like embedding vectors models, distance between neural population correlates with distance; however, this effect was only observed (like BERT) and reversed non-contextual Word2Vec), suggesting depends critically on contextualization. Moreover, for subset highly semantically similar words, even embedders showed an inverse correlation distances; attribute pattern noise-mitigating benefits contrastive coding. Finally, further support critical context, range covaries lexical polysemy. Ultimately, these results hypothesis hippocampus follows principles.

Язык: Английский

Процитировано

0

The Geometry and Dimensionality of Brain-wide Activity DOI Open Access
Zezhen Wang, Weihao Mai, Yuming Chai

и другие.

Опубликована: Март 21, 2025

Understanding neural activity organization is vital for deciphering brain function. By recording whole-brain calcium in larval zebrafish during hunting and spontaneous behaviors, we find that the shape of space, described by covariance spectrum, scale-invariant: a smaller, randomly sampled cell assembly resembles entire brain. This phenomenon can be explained Euclidean Random Matrix theory, where neurons are reorganized from anatomical to functional positions based on their correlations. Three factors contribute observed scale invariance: slow correlation decay, higher space dimension, heterogeneity. In addition matching data mice, our theory analysis demonstrate how geometry evolves with population sizes sampling methods, thus revealing an organizing principle brain-wide activity.

Язык: Английский

Процитировано

0

Mouse sensorimotor cortex reflects complex kinematic details during reaching and grasping DOI Open Access
Harrison A. Grier,

Sohrab Salimian,

Matthew T. Kaufman

и другие.

Опубликована: Апрель 22, 2025

Coordinated forelimb actions, such as reaching and grasping, rely on motor commands that span a spectrum from abstract target specification to detailed instantaneous muscle control. The sensorimotor cortex is central controlling these complex movements, yet how the command signals are distributed across its numerous subregions remains unclear. In particular, in mice it unknown if primary (M1) somatosensory (S1) cortices represent low-level joint angle details addition high-level like movement direction. Here, we combine high quality markerless tracking two-photon imaging during reach-to-grasp task quantify movement-related activity mouse caudal area (CFA) S1 (fS1). Linear decoding models reveal strong representation of proximal distal angles both areas, areas support with comparable fidelity. Despite shared encoding, time course target-specific information varied areas. CFA exhibited early onset sustained encoding while fS1 was more transiently modulated around lift onset. These results unique contributions implicating cortical circuit for control than has been previously considered.

Язык: Английский

Процитировано

0