Опубликована: Янв. 1, 2024
Язык: Английский
Plant Physiology and Biochemistry, Год журнала: 2024, Номер 214, С. 108950 - 108950
Опубликована: Июль 18, 2024
Процитировано
6
Plant Communications, Год журнала: 2024, Номер 5(7), С. 100927 - 100927
Опубликована: Апрель 27, 2024
Long non-coding RNAs (lncRNAs) have emerged as integral gene-expression regulators underlying plant growth, development, and adaptation. To adapt to the heterogeneous dynamic rhizosphere, plants use interconnected regulatory mechanisms optimally fine-tune gene-expression-governing interactions with soil biota, well nutrient acquisition heavy metal tolerance. Recently, high-throughput sequencing has enabled identification of lncRNAs responsive rhizosphere biotic abiotic cues. Here, we examine lncRNA biogenesis, classification, mode action, highlighting functions in mediating adaptation diverse factors. We then discuss studies that reveal significance target genes during developmental plasticity stress responses at rhizobium interface. A comprehensive understanding specific lncRNAs, their targets, intricacies functional interaction networks will provide crucial insights into how these transcriptomic switches shifting signals. Looking ahead, foresee single-cell dissection cell-type-specific dynamics enhance our precise modulation enable Overcoming future challenges through multi-omics genetic approaches more fully roles governing belowground environment.
Язык: Английский
Процитировано
5
Progress in molecular biology and translational science, Год журнала: 2025, Номер unknown
Опубликована: Янв. 1, 2025
Язык: Английский
Процитировано
0
Database, Год журнала: 2025, Номер 2025
Опубликована: Янв. 1, 2025
Abstract The biotic stress significantly influences the production of potato (Solanum tuberosum L.) all over world. Long noncoding RNAs (lncRNAs) play key roles in plant response to environmental stressors. However, their resistance pathogens, insects, and other are still unclear. PotatoBSLnc is a database for study lncRNAs major stress. Here, we collected 364 RNA sequencing (RNA-seq) data derived from 12 kinds stresses 26 cultivars wild potatoes. currently contains 18 636 44 263 mRNAs. In addition, select functional mRNAs under different stresses, differential expression analyses Gene Ontology (GO) Kyoto Encyclopedia Genes Genomes (KEGG) related cis/trans-targets differentially expressed (DElncRNAs) (DEmRNAs) were also conducted. five modules: Home, Browse, Expression, Biotic stress, Download. Among these, “Browse” module can be used search detailed information about RNA-seq (disease, cultivator, organ types, treatment samples, others), exon numbers, length, location, sequence each lncRNA/mRNA. “Expression” transcripts per million/raw count value lncRNAs/mRNAs at data. “Biotic stress” shows results DElncRNAs, GO KEGG analysis DEmRNAs, targets DElncRNAs. platform provides researchers with on which speed up breeding resistant varieties based molecular methods. Database URL: https://www.sdklab-biophysics-dzu.net/PotatoBSLnc
Язык: Английский
Процитировано
0
Experimental Parasitology, Год журнала: 2025, Номер unknown, С. 108931 - 108931
Опубликована: Март 1, 2025
Язык: Английский
Процитировано
0
Journal of Plant Physiology, Год журнала: 2025, Номер 308, С. 154493 - 154493
Опубликована: Апрель 12, 2025
Язык: Английский
Процитировано
0
Plant Science, Год журнала: 2025, Номер unknown, С. 112542 - 112542
Опубликована: Май 1, 2025
Язык: Английский
Процитировано
0
IntechOpen eBooks, Год журнала: 2025, Номер unknown
Опубликована: Май 27, 2025
Long non-coding RNAs (lncRNAs) are emerging as crucial regulators in plant biology, particularly under abiotic and biotic stress conditions. These molecules, which lack protein-coding potential, exhibit diverse roles regulating gene expression at transcriptional, post-transcriptional, epigenetic levels. Recent advancements reveal their involvement critical responses, including drought, salinity, extreme temperatures, heavy metal toxicity, highlighting potential enhancing crop resilience amidst changing climatic Additionally, lncRNAs influence chromatin remodeling, histone modifications, DNA methylation, underlining role regulation. High-throughput sequencing technologies computational tools have significantly advanced the identification functional annotation of across various species, paving way for innovative strategies improvement programmes. This chapter explores evolution, classification, mechanisms, stress-specific lncRNAs, providing a comprehensive understanding applications sustainable agriculture.
Язык: Английский
Процитировано
0
International Journal of Molecular Sciences, Год журнала: 2024, Номер 25(22), С. 11964 - 11964
Опубликована: Ноя. 7, 2024
Long non-coding RNA (lncRNA) refers to an molecule longer than 200 nucleotides (nt) that plays a significant role in regulating essential molecular and biological processes. It is commonly found animals, plants, viruses, characterized by features such as epigenetic markers, developmental stage-specific expression, tissue-specific expression. Research has shown lncRNA participates anatomical processes like plant progression, while also playing crucial disease resistance adaptation mechanisms. In this review, we provide concise overview of the formation mechanism, structural characteristics, databases related recent years. We primarily discuss roles progression well its involvement response biotic abiotic stresses. Additionally, examine current challenges associated with explore potential application crop production breeding. Studying lncRNAs highly for multiple reasons: reveals regulatory mechanisms growth development, promotes agricultural food security, drives research genomics epigenetics. it facilitates ecological protection biodiversity conservation.
Язык: Английский
Процитировано
3
Plants, Год журнала: 2023, Номер 12(23), С. 4047 - 4047
Опубликована: Ноя. 30, 2023
Long non-coding RNAs (lncRNAs) regulate gene expression in eukaryotic organisms. Research suggests that lncRNAs may be involved the regulation of nitrogen use efficiency plants. In this study, we identified 1628 based on transcriptomic sequencing rice roots under low-nitrogen (LN) treatment through implementation an integrated bioinformatics pipeline. After 4 h LN treatment, 50 and 373 mRNAs were significantly upregulated, 17 578 downregulated. 48 43 536 42 947 Moreover, interaction network among was investigated one LN-induced (lncRNA24320.6) further characterized. lncRNA24320.6 demonstrated to positively a flavonoid 3'-hydroxylase 5 (OsF3'H5). The overexpression shown improve absorption promote growth seedlings conditions. Our results provide valuable insights into roles response starvation.
Язык: Английский
Процитировано
3