Metagenomic Meta-Analysis of Antibiotic-Resistance Genes in Wastewater: A Perspective from the COVID-19 Pandemic DOI Open Access

Shaima M. Alhazmi,

Ala’a BaniMustafa, Abrar R. Alindonosi

и другие.

Water, Год журнала: 2024, Номер 16(24), С. 3571 - 3571

Опубликована: Дек. 12, 2024

Antibiotic resistance is a silent global crisis intensified by the recent pandemic of coronavirus disease 2019 (COVID-19). To address this growing threat, wastewater-based surveillance (WBS) emerging as promising public health tool for monitoring antibiotic within communities. Our meta-analysis aims to reveal landscape antibiotic-resistance genes (ARGs) in wastewater during and after COVID-19 pandemic. The analysis included samples collected between 2020 2024 from five countries across three continents: Asia (China), Europe (United Kingdom Russia), North America States Canada). findings showed higher observed ARGs Russia China despite their small sample size, while USA more diverse ARGs. Distinct patterns were European American (p-value < 0.001). We identified 2483 ARGs, with multidrug-resistant (MDR) dominating most regions accounting almost 45% all detected Europe. Country-specific indicator 22 unique Russia, 3 each UK Canada, 2 specific China. Continentally, 100 Asia, 38 Europe, 18 America. These highlight regional variations ARG profiles, emphasizing urgent need region-specific strategies combat threat. Additionally, our study further supports value WBS valuable resistance.

Язык: Английский

An observational study protocol on wastewater measurements and diaper culture to estimate antimicrobial resistance in long-term care facilities for people with intellectual disabilities: The GIRAF-MIC study protocol DOI Creative Commons
Soemeja Hidad, Sabine C. de Greeff,

F. de Haan

и другие.

PLoS ONE, Год журнала: 2025, Номер 20(5), С. e0324083 - e0324083

Опубликована: Май 15, 2025

Introduction Antimicrobial resistance (AMR) has become one of the leading global health threats. It is critical to understand burden AMR, particularly among vulnerable populations such as people with intellectual disabilities residing in long-term care facilities (ID-LTCFs). Traditional study methods estimate AMR these settings, rectal swabs measure prevalence MDRO carriage, are considered burdensome for this population. This underscores importance a non-invasive method assess living ID-LTCFs. publication describes protocol an alternative approach specifically Extended Spectrum Beta-Lactamase (ESBL) and carbapenemase-producing Enterobacterales (CPE), ID-LTCFs Netherlands, through wastewater measurements combined analysis stool collected from diaper material. The provides detailed information about design methodologies proposed pilot study. Methods Wastewater samples will be obtained sewers ID-LCTFs using passive samplers. Additionally, considerable part ID-LTCF residents incontinent, material which incontinent participating cultured on selective media detect ESBL-producing carbapenem producing (CPE) strains. Determination strains carried out MALDI-TOF phenotypical tests confirm ESBL CPE In samples, bacterial concentrations determined, expressed colony forming unit (CFU) per sampler, while presence or absence reported proportions. Ethics dissemination procedures described conducted line principles outlined Declaration Helsinki, Code Conduct Health research, well General Data Protection Regulation. Approval advance by ethical research committee institutional review board deemed unnecessary current national European legislation.

Язык: Английский

Процитировано

0

Optimisation of analytical methods for tuberculosis drug detection in wastewater: A multinational study DOI Creative Commons
Hlengiwe N. Mtetwa, Isaac Dennis Amoah, Sheena Kumari

и другие.

Heliyon, Год журнала: 2024, Номер 10(10), С. e30720 - e30720

Опубликована: Май 1, 2024

Wastewater-based epidemiology (WBE) is a robust tool for disease surveillance and monitoring of pharmaceutical consumption. However, tuberculosis (TB) drug consumption faces challenges due to limited data availability. This study aimed optimise methods detecting TB drugs in treated untreated wastewater from four African countries: South Africa, Nigeria, Kenya, Cameroon. The limit detection (LOD) these ranged minimum 2.20 (±1.02) rifampicin maximum 2.95 (±0.79) pyrazinamide. A parallel trend was observed concerning the quantification (LOQ), with reporting lowest average LOQ 7.33 (±3.44) pyrazinamide showing highest 9.81 (±2.64). variance LOD values could be attributed factors such as polarity. Erythromycin exhibited moderately polar LogP (2.6 2.95), indicating higher lipid affinity lower water affinity. Conversely, ethambutol, pyrazinamide, isoniazid displayed (-0.059, -0.6, -0.7), suggesting greater revealed that storing samples up 5 days did not result significant concentration loss, reduction remaining below 1 log throughout storage period. Application optimised method both unveiled varied results. Detection frequencies among drugs, ethambutol consistently most detected, while were least detected only two countries. Most had undetectable concentrations, ranging 1.21 ng/mL erythromycin 54.61 isoniazid. variability may suggest differences within connected communities. In samples, detectable concentrations 1.27 10.20 ethambutol. Wastewater treatment plants variable removal efficiencies different emphasising need further optimisation. Detecting suggests potential surface contamination subsequent risks human exposure, underscoring continued research's importance.

Язык: Английский

Процитировано

2

Changes in antibiotic resistance patterns of Gram-negative bacilli across three different wastewater treatment plants in northwest Algeria; first comparative study DOI

Fatima Zohra Mokeddem,

Fatima Zohra Amel Khelil,

Slimane Mokrani

и другие.

Microbial Pathogenesis, Год журнала: 2024, Номер 199, С. 107196 - 107196

Опубликована: Дек. 7, 2024

Язык: Английский

Процитировано

1

Antimicrobial resistance containment in Africa: Moving beyond surveillance DOI Creative Commons

Zikora Kizito Glory Anyaegbunam,

Ifeanyi Elibe,

Yandev Doowuese

и другие.

Biosafety and Health, Год журнала: 2023, Номер 6(1), С. 50 - 58

Опубликована: Дек. 29, 2023

Worldwide, infections caused by drug-resistant pathogens constitute a significant challenge threatening therapeutic efforts. According to the World Health Organization (WHO), antimicrobial resistance (AMR) ranks among top 10 global public health threats. Organisms with high rate of multiple host adaptivity, genetic diversity (multiple lineages), virulence factors, and exchange have been isolated from various sources (humans, animals, environment) even without exposure prior antibiotics. Till now, source AMR how resistant clones are selected in environment remain largely elusive, potential anthropogenic transmission has reported different studies. Various pathogens, lineages, clones, outbreak clusters, plasmid replicates, genes that play critical role dissemination identified. Maintenance certain multidrug-resistant (MDR) determinants also shown enhance or support propagation MDR. So far, advances made understanding burden AMR. However, overcoming requires holistic approach, as there is no single approach sufficient precision curb threat. While strengthening surveillance efforts essential, we shown, need intensify strengthen interventions, especially priority regions such Africa. Herein, discussed humans, (non-medical drivers). We further delved into big questions on Africa interventions involving vaccines other viable biomaterials could be pivotal reducing barest minimum.

Язык: Английский

Процитировано

3

Wastewater surveillance of antibiotic resistance and class 1 integron-integrase genes: Potential impact of wastewater characteristics on genes profile DOI Creative Commons
Zahra Shamsizadeh, Mahnaz Nikaeen, Farzaneh Mohammadi

и другие.

Heliyon, Год журнала: 2024, Номер 10(9), С. e29601 - e29601

Опубликована: Апрель 30, 2024

Antibiotic resistance (AR) is a major global health concern, but current surveillance efforts primarily focus on healthcare settings, leaving lack of understanding about AR across all sectors the One Health approach. To bridge this gap, wastewater provides cost-effective and efficient method for monitoring within population. In study, we implemented program by effluent from two large-scale municipal treatment plants situated in Isfahan, central region Iran. These covered distinct catchment regions served combined population million residents. Furthermore, effect physicochemical microbial characteristics including biological oxygen demand (BOD), chemical (COD), total suspended solids (TSS), temperature, coliforms

Язык: Английский

Процитировано

0

Concordance in molecular methods for detection of antimicrobial resistance: A cross sectional study of the influent to a wastewater plant DOI Creative Commons
Kezia Drane, Roger Huerlimann, Rhondda Jones

и другие.

Journal of Microbiological Methods, Год журнала: 2024, Номер 228, С. 107069 - 107069

Опубликована: Ноя. 17, 2024

Methods that are used to characterise microbiomes and antimicrobial resistance genes (ARGs) in wastewater not standardised. We shotgun metagenomic sequencing (SM-Seq), RNA (RNA-seq) targeted qPCR compare microbial ARG diversity the influent a municipal treatment plant Australia. ARGs were annotated with CARD-RGI MEGARes databases, bacterial was characterised by 16S rRNA gene SM-Seq, species annotation SILVA/GreenGenes databases or Kraken2 NCBI nucleotide database respectively. CARD identified evenly distributed profiles but detected richer array of (richness = 475 vs 320). Qualitatively, encoding for aminoglycoside, macrolide-lincosamide-streptogramin multidrug most abundant all examined databases. RNA-seq only 32 % there concordance qualitative identification macrolide-lincosamide, phenicol, sulfonamide SM-Seq RNA-seq. confirmed detection some ARGs, including OXA, VEB EREB, influent. For bacteria, equally effective population profiling at phyla class level. However, significantly higher richness 15,000 3750). These results demonstrate sufficient surveillance wastewater. more precise quantification however, presented better resolution. The functionality confirmed, general agreement on putative phenotypic profile observed between RNA-Seq SM-Seq.

Язык: Английский

Процитировано

0

First Report of Carbapenem-Resistant Klebsiella michiganensis Co-Harboring blaKPC-2 and TmexCD2-ToprJ2 Isolated from Wastewater at a Tertiary Hospital in Beijing DOI Creative Commons
Jason M. Long, Jiali Chen, Yue Yuan

и другие.

Infection and Drug Resistance, Год журнала: 2024, Номер Volume 17, С. 5117 - 5128

Опубликована: Ноя. 1, 2024

is an emerging human pathogen that causes nosocomial infections. Its prevalence and spread in the environment should not be ignored. This study identified characterized

Язык: Английский

Процитировано

0

Metagenomic Meta-Analysis of Antibiotic-Resistance Genes in Wastewater: A Perspective from the COVID-19 Pandemic DOI Open Access

Shaima M. Alhazmi,

Ala’a BaniMustafa, Abrar R. Alindonosi

и другие.

Water, Год журнала: 2024, Номер 16(24), С. 3571 - 3571

Опубликована: Дек. 12, 2024

Antibiotic resistance is a silent global crisis intensified by the recent pandemic of coronavirus disease 2019 (COVID-19). To address this growing threat, wastewater-based surveillance (WBS) emerging as promising public health tool for monitoring antibiotic within communities. Our meta-analysis aims to reveal landscape antibiotic-resistance genes (ARGs) in wastewater during and after COVID-19 pandemic. The analysis included samples collected between 2020 2024 from five countries across three continents: Asia (China), Europe (United Kingdom Russia), North America States Canada). findings showed higher observed ARGs Russia China despite their small sample size, while USA more diverse ARGs. Distinct patterns were European American (p-value < 0.001). We identified 2483 ARGs, with multidrug-resistant (MDR) dominating most regions accounting almost 45% all detected Europe. Country-specific indicator 22 unique Russia, 3 each UK Canada, 2 specific China. Continentally, 100 Asia, 38 Europe, 18 America. These highlight regional variations ARG profiles, emphasizing urgent need region-specific strategies combat threat. Additionally, our study further supports value WBS valuable resistance.

Язык: Английский

Процитировано

0