BMC Medical Genomics,
Год журнала:
2025,
Номер
18(1)
Опубликована: Апрель 8, 2025
The
increased
demand
for
markers
colorectal
cancer
(CRC)
highlights
the
importance
of
investigating
immune
cells
involved
in
CRC
progression.
This
study
aims
to
dissect
mast
CRC,
characterize
role
development,
coordinate
molecular
communication
between
and
malignant
cells,
construct
validate
a
prognostic
classification
model
based
on
cell
markers.
Single-cell
transcriptome
data
patients
were
extracted
from
GSE146771
annotation.
identified
by
copykat
was
analyzed
CellChat.
Least
absolute
shrinkage
selection
operator
(LASSO)
regression
analysis
Cox
performed
TCGA-COAD
cohort
model.
qRT-PCR
detect
mRNA
expression
molecules
P815
MC-9
cells.
co-culture
experiment
MC38
12-well
transwell
dish.
Wound
healing
assay
Transwell
migration
invasion.
10,186
high-quality
annotated
9
types.
Six
(HDC,
GATA2,
ASAH1,
BTBD19,
TIMP1,
FAM110A)
selected
high-risk
score
defined
showed
high
infiltration
immunosuppressive
including
endothelial
CAFs,
Tregs
angiogenesis
epithelial-mesenchymal
transition
(EMT)
activities.
In
model,
HDC
abnormally
low
expressed
while
FAM110A,
ASAH1
TIMP1
excessive
Knockdown
GATA2
system
blocked
types
within
elaborated
cellular
functions
development
their
highlighted
components
biological
features
that
constitute
promising
Cell Death and Disease,
Год журнала:
2021,
Номер
12(11)
Опубликована: Ноя. 13, 2021
Abstract
Cetuximab
is
approved
for
the
treatment
of
metastatic
colorectal
cancer
(mCRC)
with
RAS
wild-type.
Nevertheless,
prognosis
remains
poor
and
effectiveness
cetuximab
limited
in
KRAS
mutant
mCRC.
Recently,
emerging
evidence
has
shown
that
ferroptosis,
a
newly
discovered
form
nonapoptotic
cell
death,
closely
related
to
cells.
Here,
we
further
investigated
whether
cetuximab-mediated
regulation
p38/Nrf2/HO-1
promotes
RSL3-induced
ferroptosis
plays
pivotal
role
overcoming
drug
resistance
(CRC).
In
our
research,
used
two
CRC
lines,
HCT116
DLD-1,
as
models
intrinsic
cetuximab.
The
viability
cells
treated
combination
RSL3
was
assessed
by
CCK-8
colony
formation
assays.
effective
promote
evaluating
lipid
reactive
oxygen
species
accumulation
expression
malondialdehyde
intracellular
iron
assay.
therapy
contributed
regulating
axis,
determined
western
blotting
transfection
small
interfering
RNAs.
promoted
inhibiting
Nrf2/HO-1
cells,
this
demonstrated
xenograft
nude
mouse
model.
Our
work
reveals
enhances
cytotoxic
effect
on
axis
through
activation
p38
MAPK.
International Journal of Molecular Sciences,
Год журнала:
2023,
Номер
24(19), С. 14815 - 14815
Опубликована: Окт. 1, 2023
The
epithelial–mesenchymal
transition
(EMT)
is
a
cellular
reprogramming
process
that
occurs
during
embryonic
development
and
adult
tissue
homeostasis.
This
involves
epithelial
cells
acquiring
mesenchymal
phenotype.
Through
EMT,
cancer
acquire
properties
associated
with
more
aggressive
EMT
its
opposite,
mesenchymal–epithelial
(MET),
have
been
described
in
tumors
over
the
past
ten
years,
including
colorectal
(CRC).
When
activated,
expression
of
marker
E-cadherin
decreased
vimentin
raised.
As
result,
temporarily
take
on
phenotype,
becoming
motile
promoting
spread
tumor
cells.
Epithelial–mesenchymal
plasticity
(EMP)
has
become
hot
issue
CRC
because
strong
inducers
(such
as
transforming
growth
factor
β,
TGF-β)
can
initiate
regulate
metastasis,
microenvironment,
immune
system
resistance
CRC.
In
this
review,
we
into
account
significance
EMT-MET
impact
cells’
prognosis
analysis
connection
between
stem
(CCSCs)
will
help
to
further
clarify
current
meager
understandings
EMT.
Recent
advances
affecting
important
transcription
factors
CCSCs
are
highlighted.
We
come
conclusion
regulatory
network
for
complicated,
great
deal
crosstalk
alternate
paths.
More
thorough
research
required
effectively
connect
clinical
management
biomarkers
targeted
treatments
Abstract
Background
Long
noncoding
RNAs
(lncRNAs)
have
emerged
as
key
players
in
tumorigenesis
and
tumour
progression.
However,
the
biological
functions
potential
mechanisms
of
lncRNAs
colorectal
cancer
(CRC)
are
unclear.
Methods
The
novel
lncRNA
POU6F2-AS1
was
identified
through
bioinformatics
analysis,
its
expression
CRC
patients
verified
via
qRT–PCR
FISH.
In
vitro
vivo
experiments,
such
BODIPY
staining,
Oil
Red
O
triglyceride
(TAG)
assays,
liquid
chromatography
mass
spectrometry
(LC-MS)
were
subsequently
performed
with
specimens
cells
to
determine
clinical
significance,
functional
roles
POU6F2-AS1.
Biotinylated
RNA
pull-down,
RIP,
Me-RIP,
ChIP,
patient-derived
organoid
(PDO)
culture
assays
confirm
underlying
mechanism
Results
is
markedly
upregulated
associated
adverse
clinicopathological
features
poor
overall
survival
patients.
Functionally,
promotes
growth
lipogenesis
both
vivo.
Mechanistically,
METTL3-induced
m
6
A
modification
involved
upregulation
Furthermore,
could
tether
YBX1
FASN
promoter
induce
transcriptional
activation,
thus
facilitating
cells.
Conclusions
Our
data
revealed
that
plays
a
critical
role
fatty
acid
metabolism
might
provide
promising
biomarker
therapeutic
target
for
CRC.
Clinical Medicine Insights Oncology,
Год журнала:
2024,
Номер
18
Опубликована: Янв. 1, 2024
Colorectal
cancer
is
the
third
most
prevalent
worldwide,
and
its
treatment
has
been
a
demanding
clinical
problem.
Beyond
traditional
surgical
therapy
chemotherapy,
newly
revealed
molecular
mechanisms
diversify
therapeutic
approaches
for
colorectal
cancer.
However,
selection
of
personalized
among
multiple
options
become
another
challenge
in
era
precision
medicine.
Artificial
intelligence
recently
increasingly
investigated
This
narrative
review
mainly
discusses
applications
artificial
patients.
A
comprehensive
literature
search
was
conducted
MEDLINE,
EMBASE,
Web
Science
to
identify
relevant
papers,
resulting
49
articles
being
included.
The
results
showed
that,
based
on
different
categories
data,
can
predict
outcomes
essential
guidance
information
novel
therapies,
thus
enabling
individualized
strategy
Some
frequently
implemented
machine
learning
algorithms
deep
frameworks
have
also
employed
long-term
prognosis
prediction
patients
with
Overall,
shows
encouraging
evaluation
npj Precision Oncology,
Год журнала:
2024,
Номер
8(1)
Опубликована: Янв. 22, 2024
ABSTRACT
The
classification
of
extramural
vascular
invasion
status
using
baseline
magnetic
resonance
imaging
in
rectal
cancer
has
gained
significant
attention
as
it
is
an
important
prognostic
marker.
Also,
the
accurate
prediction
patients
achieving
complete
response
with
primary
staging
MRI
assists
clinicians
determining
subsequent
treatment
plans.
Most
studies
utilised
radiomics-based
methods,
requiring
manually
annotated
segmentation
and
handcrafted
features,
which
tend
to
generalise
poorly.
We
retrospectively
collected
509
from
9
centres,
proposed
a
fully
automated
pipeline
for
EMVI
CR
diffusion
weighted
T2-weighted
imaging.
applied
nnUNet,
self-configuring
deep
learning
model,
tumour
employed
learned
multiple-level
image
features
train
models,
named
MLNet.
This
ensures
more
comprehensive
representation
terms
both
fine-grained
detail
global
context.
On
external
validation,
MLNet,
yielding
similar
AUCs
internal
outperformed
3D
ResNet10,
neural
network
ten
layers
designed
analysing
spatiotemporal
data,
tasks.
For
prediction,
MLNet
showed
better
results
than
current
state-of-the-art
model
clinical
same
cohort.
Our
study
demonstrated
that
incorporating
multi-level
representations
by
based
on
improves
good
generalisation
data.
observed
variations
contributions
individual
feature
maps
different
potential
be
settings,
particularly
classification.
Frontiers in Oncology,
Год журнала:
2024,
Номер
14
Опубликована: Апрель 24, 2024
Altered
cholesterol
metabolism
has
been
identified
as
a
critical
feature
of
cancers.
Cholesterol
functions
the
main
component
cell
membrane,
and
is
required
for
sustaining
membrane
integrity
mediating
signaling
transduction
survival.
The
intracellular
level
dynamically
regulated.
Excessive
could
be
converted
to
less
toxic
cholesteryl
esters
by
acyl-coenzyme
A:cholesterol
acyltransferases
(ACATs).
While
ACAT2
limited
value
in
cancers,
ACAT1
found
widely
participated
tumor
initiation
progression.
Moreover,
due
important
role
immune
function,
also
essential
regulating
anti-tumor
immunity.
inhibition
may
exploited
potential
strategy
enhance
immunity
eliminate
tumors.
Herein,
comprehensive
understanding
development
provide
new
insights
strategies.
World Journal of Clinical Oncology,
Год журнала:
2025,
Номер
16(3)
Опубликована: Янв. 20, 2025
BACKGROUND
Colorectal
cancer
(CRC)
is
a
prevalent
malignant
tumor
characterized
by
high
mortality
rate,
with
significant
challenges
persisting
in
the
identification
and
management
of
its
metastatic
stage.
The
role
checkpoint
kinase
1
(CHEK1),
cell
cycle
kinase,
CRC
has
not
been
fully
clarified.
We
hypothesize
that
upregulation
CHEK1
may
enhance
proliferation
cells,
indicating
potential
as
novel
therapeutic
target
for
therapy.
AIM
To
investigate
expression
function
CRC,
this
study
utilizes
single-cell
RNA
sequencing
tissue
microarray
data.
METHODS
Single-cell
technology
was
employed
to
analyze
cells
from
GSE144735
dataset,
immunohistochemistry
conducted
confirm
adjacent
tissues.
also
integrated
mRNA
data
multiple
public
databases
assess
global
CRC.
Molecular
docking
experiments
were
performed
explore
interaction
between
drug
nitidine
chloride
(NC),
well
influence
on
proliferation.
RESULTS
found
comparatively
elevated
epithelial
marked
levels
Immunohistochemical
analysis
further
confirmed
tissues,
receiver
operating
characteristic
curve
demonstrated
accuracy
(area
under
=
0.964)
biomarker.
Analysis
datasets
indicated
statistically
overexpression
(standard
mean
difference
1.81,
P
<
0.01),
summary
yielding
sensitivity
specificity
values
0.83
0.88,
respectively.
studies
NC
specifically
targeted
CHEK1,
while
clustered
regularly
interspaced
short
palindromic
repeats
knockout
promoted
CONCLUSION
Upregulation
promotes
However,
dataset's
diversity
limited,
requiring
investigation
into
specific
mechanisms.