Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution DOI Creative Commons
Mrinalini Ghoshal, Tyler Bechtel, John G. Gibbons

и другие.

Frontiers in Microbiology, Год журнала: 2024, Номер 15

Опубликована: Фев. 27, 2024

Introduction This study is the final part of a two-part series that delves into molecular mechanisms driving adaptive laboratory evolution (ALE) Salmonella enterica in acid stress. The phenotypic and transcriptomic alterations acid-evolved lineages (EL) serovar Enteritidis after 70 days stress exposure were analyzed. Materials methods stability changes observed acetic was explored removal using newly developed evolutionary lineage EL5. Additionally, impact short-term on previously adapted EL4 also examined. Results results indicate elevated antibiotic minimum inhibitory concentration (MIC) to for lost when removed. phenomenon against human antibiotics such as meropenem, ciprofloxacin, gentamicin, streptomycin. MIC meropenem day 0.094 mM, which dropped 0.032 mM removed from 70. However, reintroduction, swiftly elevated, within 4 days, it returned mM. After 20 more adaptation acid, increased 0.125 other tested exhibited similar trend. be 35 remained constant even Readaptation caused increase 37 Bacterial whole genome sequencing EL5 revealed base substitutions several genes involved pathogenesis, phoQ wzc genes. Transcriptomic analysis upregulation virulence, drug resistance, toxin-antitoxin, iron metabolism Unstable S almonella small colony variants (SSCV) . compared wild-type unevolved Enteritidis. Discussion presents comprehensive understanding phenotypic, genomic, due prolonged through ALE.

Язык: Английский

Genomic and Metabolic Characterization of Plant Growth-Promoting Rhizobacteria Isolated from Nodules of Clovers Grown in Non-Farmed Soil DOI Open Access
Magdalena Wójcik, Piotr Koper, Kamil Żebracki

и другие.

International Journal of Molecular Sciences, Год журнала: 2023, Номер 24(23), С. 16679 - 16679

Опубликована: Ноя. 23, 2023

The rhizosphere microbiota, which includes plant growth-promoting rhizobacteria (PGPR), is essential for nutrient acquisition, protection against pathogens, and abiotic stress tolerance in plants. However, agricultural practices affect the composition functions of reducing their beneficial effects on growth health. Among PGPR, rhizobia form mutually symbiosis with legumes. In this study, we characterized 16 clover nodule isolates from non-farmed soil to explore (PGP) potential, hypothesizing that these bacteria may possess unique, unaltered PGP traits, compared those affected by common practices. Biolog profiling revealed versatile metabolic capabilities, enabling them utilize a wide range carbon energy sources. All were effective phosphate solubilizers, individual strains exhibited 1-aminocyclopropane-1-carboxylate deaminase metal ion chelation activities. Metabolically active showed improved performance symbiotic interactions Comparative genomics genomes five contained significantly enriched fraction unique genes associated quorum sensing aromatic compound degradation. As potential PGPR agriculture grows, emphasize importance molecular characterization traits as fundamental step towards subsequent application field an alternative chemical fertilizers supplements.

Язык: Английский

Процитировано

6

In vivo fitness of sul gene-dependent sulfonamide-resistant Escherichia coli in the mammalian gut DOI Creative Commons
Han Jiang,

Yuzhi Dong,

Jiao Xue

и другие.

mSystems, Год журнала: 2024, Номер 9(9)

Опубликована: Авг. 14, 2024

The widespread sulfonamide resistance genes

Язык: Английский

Процитировано

1

Functional annotation of hypothetical proteins from Ralstonia solanacearum UW551, a bacterium that causes wilt disease, uncovers proteins involved in virulence and pathogenicity DOI

Sharmila Velusamy,

Muniraj Gnanaraj, M. Sundar

и другие.

Journal of Plant Diseases and Protection, Год журнала: 2024, Номер 132(1)

Опубликована: Дек. 20, 2024

Язык: Английский

Процитировано

1

Emerging mechanisms by which endocannabinoids and their derivatives modulate bacterial populations within the gut microbiome DOI Creative Commons
Melissa Ellermann

Advances in Drug and Alcohol Research, Год журнала: 2023, Номер 3

Опубликована: Дек. 8, 2023

Bioactive lipids such as endocannabinoids serve important modulators of host health and disease through their effects on various functions including central metabolism, gut physiology, immunity. Furthermore, changes to the microbiome caused by external factors diet or development have been associated with altered endocannabinoid tone outcomes. These observations suggest existence reciprocal relationships between lipid signaling networks bacterial populations that reside within gut. Indeed, congeners N- acylethanolamides recently shown alter growth, functions, behaviors, therefore introducing putative mechanisms which these bioactive directly modulate microbiome. Moreover, potential interactions add another layer complexity regulation pathogenesis may be mediated derivatives. This mini review will summarize recent literature exemplifies how monoacylglycerols can impact in vitro We also highlight exciting preclinical studies engineered bacteria synthesize precursors strategies treat diseases are part driven aberrant signaling, obesity inflammatory bowel diseases.

Язык: Английский

Процитировано

3

Transcriptomic analysis using RNA sequencing and phenotypic analysis of Salmonella enterica after acid exposure for different time durations using adaptive laboratory evolution DOI Creative Commons
Mrinalini Ghoshal, Tyler Bechtel, John G. Gibbons

и другие.

Frontiers in Microbiology, Год журнала: 2024, Номер 15

Опубликована: Фев. 27, 2024

Introduction This study is the final part of a two-part series that delves into molecular mechanisms driving adaptive laboratory evolution (ALE) Salmonella enterica in acid stress. The phenotypic and transcriptomic alterations acid-evolved lineages (EL) serovar Enteritidis after 70 days stress exposure were analyzed. Materials methods stability changes observed acetic was explored removal using newly developed evolutionary lineage EL5. Additionally, impact short-term on previously adapted EL4 also examined. Results results indicate elevated antibiotic minimum inhibitory concentration (MIC) to for lost when removed. phenomenon against human antibiotics such as meropenem, ciprofloxacin, gentamicin, streptomycin. MIC meropenem day 0.094 mM, which dropped 0.032 mM removed from 70. However, reintroduction, swiftly elevated, within 4 days, it returned mM. After 20 more adaptation acid, increased 0.125 other tested exhibited similar trend. be 35 remained constant even Readaptation caused increase 37 Bacterial whole genome sequencing EL5 revealed base substitutions several genes involved pathogenesis, phoQ wzc genes. Transcriptomic analysis upregulation virulence, drug resistance, toxin-antitoxin, iron metabolism Unstable S almonella small colony variants (SSCV) . compared wild-type unevolved Enteritidis. Discussion presents comprehensive understanding phenotypic, genomic, due prolonged through ALE.

Язык: Английский

Процитировано

0