PeerJ,
Год журнала:
2024,
Номер
12, С. e17421 - e17421
Опубликована: Май 30, 2024
Rainfall-induced
coastal
runoff
represents
an
important
environmental
impact
in
near-shore
coral
reefs
that
may
affect
coral-associated
bacterial
microbiomes.
Shifts
microbiome
community
composition
and
function
can
stress
corals
ultimately
cause
mortality
reef
declines.
Impacts
of
be
site
specific
differ
between
compartments
(
Coral-associated
microorganisms
provide
crucial
nutritional,
protective,
and
developmental
benefits,
yet
many
functional
traits
remain
unexplored.
Phototrophic
bacteria
may
enhance
coral
nutrition
reduce
oxidative
stress
during
bleaching
via
photosynthesis
antioxidant
production.
Despite
this
potential,
their
role
in
the
holobiont's
energy
budget
heat
resilience
is
understudied.
This
review
explores
potential
of
phototrophic
to
health
under
environmental
stress.
Environmental Microbiology Reports,
Год журнала:
2024,
Номер
16(6)
Опубликована: Ноя. 8, 2024
Corals
have
complex
symbiotic
associations
that
can
be
influenced
by
the
environment.
We
compare
dinoflagellate
(family:
Symbiodiniaceae)
and
microbiome
of
five
scleractinian
coral
species
from
three
different
reef
habitats
in
Palau,
Micronesia.
Although
pH
temperature
corresponded
with
specific
host-Symbiodiniaceae
common
to
nearshore
offshore
habitats,
bacterial
community
dissimilarity
analyses
indicated
minimal
influence
these
factors
on
microbial
membership
for
corals
Coelastrea
aspera,
Psammocora
digitata,
Pachyseris
rugosa.
However,
colonies
sampled
close
human
development
exhibited
greater
differences
diversity
compared
habitat
Montipora
foliosa,
Pocillopora
acuta,
while
also
showing
less
consistency
Symbiodiniaceae
associations.
These
findings
indicate
location
has
communities
comprising
holobiont
provide
important
considerations
conservation
communities,
especially
island
nations
increasing
populations
development.
Botryllus
schlosseri,
is
a
model
marine
invertebrate
for
studying
immunity,
regeneration,
and
stress-induced
evolution.
Conditions
validating
its
predicted
proteome
were
optimized
using
nanoElute®
2
deep-coverage
LCMS,
revealing
up
to
4930
protein
groups
20,984
unique
peptides
per
sample.
Spectral
libraries
generated
filtered
remove
interferences,
low-quality
transitions,
only
retain
proteins
with
>3
peptides.
The
resulting
DIA
assay
library
enabled
label-free
quantitation
of
3426
represented
by
22,593
Quantitative
comparisons
single
systems
from
laboratory-raised
two
field-collected
populations
revealed
(1)
more
in
the
population,
(2)
high/low
individual
variabilities
each
population.
DNA
repair/replication,
ion
transport,
intracellular
signaling
processes
distinct
laboratory-cultured
colonies.
Spliceosome
Wnt
least
variable
(highly
functionally
constrained)
all
populations.
In
conclusion,
we
present
first
colonial
tunicate's
deep
quantitative
analysis,
identifying
functional
clusters
associated
laboratory
conditions,
different
habitats,
strong
versus
relaxed
abundance
constraints.
These
results
empower
research
on
B.
schlosseri
proteomics
resources
enable
molecular
phenotyping
changes
transfer
situ
ex
vivo
vitro
culture
conditions.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Июль 6, 2024
Abstract
As
ocean
warming
threatens
reefs
worldwide,
identifying
corals
with
adaptations
to
higher
temperatures
is
critical
for
conservation.
Genetically
distinct
but
morphologically
similar
(
i.e.,
cryptic)
coral
populations
can
be
specialized
extreme
habitats
and
thrive
under
stressful
conditions.
These
often
associate
locally
beneficial
microbiota
(Symbiodiniaceae
photobionts
bacteria),
clouding
interpretation
of
the
drivers
thermal
tolerance.
Here,
we
leverage
a
holobiont
(massive
Porites
)
high
host-partner
fidelity
investigate
adaptive
variation
across
classic
(“typical”
conditions)
characterized
by
light
attenuation.
We
uncovered
three
cryptic
lineages
that
exhibit
limited
micro-morphological
variation;
one
lineage
dominated
(L1),
had
more
even
distributions
(L2),
third
was
restricted
(L3).
Two
were
closely
related
∼4300
km
away,
suggesting
these
are
widespread.
All
harbored
Cladocopium
C15
photobionts,
strain-level
compositions
differed
among
reef
types.
L1
associated
bacteria
in
each
type,
whereas
L2
relatively
stable
associations.
L3
hosted
unique
photobiont
strains,
signaling
host-photobiont
fidelity.
Analysis
harvesting
capacity
tolerance
revealed
key
underpinning
survival
habitats.
highest
absorption
efficiency
lowest
tolerance,
it
specialist.
showing
an
intermediate
habitat
generalism,
potentially
explaining
how
survives
well
both
findings
reveal
diverging
strategies
cope
Resolving
understanding
populations;
uncovering
thermally-tolerant
holobionts
strengthen
our
evolution
symbiosis,
support
global
conservation
restoration
efforts.
Animal
guts
contain
numerous
microbes,
which
are
critical
for
nutrient
assimilation
and
pathogen
defence.
While
corals
other
Cnidaria
lack
a
true
differentiated
gut,
they
possess
semi-enclosed
gastrovascular
cavities
(GVCs),
where
vital
processes
such
as
digestion,
reproduction
symbiotic
exchanges
take
place.
The
microbiome
harboured
in
GVCs
is
therefore
likely
key
to
holobiont
fitness,
but
remains
severely
understudied
due
challenges
of
working
these
small
compartments.
Here,
we
developed
minimally
invasive
methodologies
sample
the
GVC
coral
polyps
characterise
microbial
communities
within.
We
used
glass
capillaries,
low
dead
volume
microneedles,
or
nylon
microswabs
individual
from
six
species
corals,
then
applied
low-input
DNA
extraction
microliter
samples.
Microsensor
measurements
revealed
anoxic
hypoxic
micro-niches,
persist
even
under
prolonged
illumination
with
saturating
irradiance.
These
niches
enriched
putatively
microaerophilic
facultatively
anaerobic
taxa,
Epsilonproteobacteria.
Some
core
taxa
found
Lobophyllia
hemprichii
Great
Barrier
Reef
were
also
detected
conspecific
colonies
held
aquaria,
indicating
that
associations
unlikely
be
transient.
Our
findings
suggest
chemically
microbiologically
similar
gut
higher
Metazoa.
Given
importance
microbiomes
mediating
animal
health,
harnessing
"gut
microbiome"
may
foster
novel
active
interventions
aimed
at
increasing
resilience
reefs
climate
crisis.
Corals
are
the
foundational
species
of
coral
reefs
and
coralligenous
ecosystems.
Their
success
has
been
linked
to
symbioses
with
microorganisms,
a
host
its
symbionts
therefore
considered
single
entity,
called
holobiont.
This
suggests
that
there
may
be
evolutionary
links
between
corals
their
microbiomes.
While
is
evidence
phylosymbiosis
in
scleractinian
hexacorals,
little
known
about
holobionts
Alcyonacean
octocorals.
16S
rRNA
gene
amplicon
sequencing
revealed
differences
diversity
composition
bacterial
communities
associated
octocorals
collected
from
mesophotic
zones
Mediterranean
Red
Seas.
The
low
consistent
dominance
Endozoicomonadaceae
and/or
Spirochaetaceae
suggest
these
have
shared
history
microbiota.
Phylosymbiotic
signals
were
indeed
detected
cophylogeny
associations
several
strains,
particularly
those
belonging
or
Spirochaetaceae,
identified.
Conversely,
phylosymbiotic
patterns
not
evident
Sea
octocorals,
likely
due
high
taxonomic
microbiota,
but
certain
was
observed.
Noteworthy
Endozoicomonadaceae,
suggesting
plausible
link
warrants
further
investigations
uncover
potential
underlying
patterns.
Overall,
our
findings
emphasize
importance
symbiosis
significance
exploring
host-microbiome
interactions
ecosystems
for
comprehensive
understanding
coral-microbiome
history.