In
the
past
decades,
functional
MRI
research
has
investigated
task
processing
in
a
largely
static
fashion
based
on
evoked
responses
during
blocked
and
event-related
designs.
Despite
some
progress
naturalistic
designs,
our
understanding
of
threat
remains
limited
to
those
obtained
with
standard
paradigms
dynamics.
present
paper,
we
applied
Switching
Linear
Dynamical
Systems
uncover
dynamics
continuous
threat-of-shock
paradigm.
First,
demonstrated
that
SLDS
model
learned
regularities
experimental
paradigm,
such
states
state
transitions
estimated
from
fMRI
time
series
data
85
regions
interest
reflected
proximity
approach
vs.
retreat.
After
establishing
captured
key
properties
threat-related
processing,
characterized
their
transitions.
Importantly,
both
endogenous
exogenous
contributions
The
results
revealed
how
can
be
viewed
terms
dynamic
multivariate
patterns
whose
trajectories
are
combination
intrinsic
extrinsic
factors
jointly
determine
brain
temporally
evolves
threat.
Furthermore,
developed
measure
region
importance
quantifies
an
individual
system
dynamics,
which
complements
system-level
characterization
is
state-space
formalism.
Finally,
generalizability
modeling
approach.
successful
application
trained
one
paradigm
separate
experiment
illustrates
potential
this
capture
generalize
across
related
but
distinct
threat-processing
tasks.
We
propose
viewing
through
lens
dynamical
systems
offers
important
avenues
not
unveiled
designs
analyses.
Journal of Biomedical Optics,
Год журнала:
2025,
Номер
30(S2)
Опубликована: Март 19, 2025
SignificanceSeveral
miniaturized
optical
neuroimaging
devices
for
preclinical
studies
mimicking
benchtop
instrumentation
have
been
proposed
in
the
past.
However,
they
are
generally
relatively
large,
complex,
and
power-hungry,
limiting
their
usability
long-term
measurements
freely
moving
animals.
Further,
there
is
limited
research
development
of
algorithms
to
analyze
signals.AimWe
aim
develop
a
cost-effective,
easy-to-use
intrinsic
monitoring
system
(TinyIOMS)
that
can
be
reliably
used
record
spontaneous
stimulus-evoked
hemodynamic
changes
further
cluster
brain
states
based
on
features.ApproachWe
present
design
fabrication
TinyIOMS
(8
mm×13
mm×9
mm3,
1.2
g
with
battery).
A
standard
camera-based
widefield
(WFIOS)
validate
signals.
Next,
continuously
activity
7
h
chronically
implanted
mice.
We
show
up
2
days
intermittent
recording
from
an
animal.
An
unsupervised
machine
learning
algorithm
signals.ResultsWe
observed
data
comparable
WFIOS
data.
Stimulus-evoked
recorded
using
was
distinguishable
stimulus
magnitude.
Using
TinyIOMS,
we
successfully
achieved
continuous
its
home
cage
placed
animal
housing
facility,
i.e.,
outside
controlled
lab
environment.
(k-means
clustering),
grouping
into
two
clusters
representing
asleep
awake
accuracy
∼91%.
The
same
then
applied
2-day-long
dataset,
where
similar
emerged.ConclusionsTinyIOMS
applications
Results
indicate
device
suitable
mice
during
behavioral
synchronized
video
external
stimuli.
The Journal of Physiology,
Год журнала:
2025,
Номер
unknown
Опубликована: Март 28, 2025
Abstract
Understanding
the
link
between
cellular
processes
and
brain
function
remains
a
key
challenge
in
neuroscience.
One
crucial
aspect
is
interplay
specific
ion
channels
network
dynamics.
This
work
reveals
role
for
h‐current,
hyperpolarization‐activated
cationic
current,
shaping
cortical
slow
oscillations.
Cortical
oscillations
are
generated
not
only
during
wave
sleep
deep
anaesthesia,
but
also
association
with
disorders
of
consciousness
lesions.
exhibit
rhythmic
periods
activity
(Up
states)
alternating
silent
(Down
states).
By
progressively
reducing
h‐current
both
slices
computational
model,
we
observed
Up
states
transformed
into
prolonged
plateaus
sustained
firing,
while
Down
were
significantly
extended.
transformation
led
to
fivefold
reduction
oscillation
frequency.
In
biophysical
recurrent
identified
mechanisms
underlying
this
dynamics:
an
increased
neuronal
input
resistance
membrane
time
constant,
increasing
responsiveness
even
weak
inputs.
A
partial
block
therefore
resulted
change
state.
HCN
(hyperpolarization‐activated
cyclic
nucleotide‐gated)
channels,
which
generate
known
targets
neuromodulation,
suggesting
potential
pathways
dynamic
control
rhythms.
image
Key
points
We
investigated
emergent
dynamics,
specifically
states,
slices.
Blocking
lasting
up
4
s.
elongated
oscillatory
frequency
decreased.
model
replicated
these
findings
allowed
us
explore
mechanisms.
An
increase
constant
rise
excitability,
synaptic
firing
rates.
Our
results
highlight
significant
controlling
patterns,
making
it
relevant
target
neuromodulators
regulating
states.
Communications Biology,
Год журнала:
2025,
Номер
8(1)
Опубликована: Апрель 11, 2025
Exploring
natural
or
pharmacologically
induced
brain
dynamics,
such
as
sleep,
wakefulness,
anesthesia,
provides
rich
functional
models
for
studying
states.
These
allow
detailed
examination
of
unique
spatiotemporal
neural
activity
patterns
that
reveal
function.
However,
assessing
transitions
between
states
remains
computationally
challenging.
Here
we
introduce
a
pipeline
to
detect
and
their
in
the
cerebral
cortex
using
dual-model
Convolutional
Neural
Network
(CNN)
self-supervised
autoencoder-based
multimodal
clustering
algorithm.
This
approach
distinguishes
slow
oscillations,
microarousals,
wakefulness
with
high
confidence.
Using
chronic
local
field
potential
recordings
from
rats,
our
method
achieved
global
accuracy
91%,
up
96%
certain
For
transitions,
report
an
average
74%.
Our
were
trained
leave-one-out
methodology,
allowing
broad
applicability
across
subjects
pre-trained
deployments.
It
also
features
confidence
parameter,
ensuring
only
highly
cases
are
automatically
classified,
leaving
ambiguous
unsupervised
classifier
further
expert
review.
presents
reliable
efficient
tool
state
labeling
analysis,
applications
basic
clinical
neuroscience.
In
the
past
decades,
functional
MRI
research
has
investigated
task
processing
in
a
largely
static
fashion
based
on
evoked
responses
during
blocked
and
event-related
designs.
Despite
some
progress
naturalistic
designs,
our
understanding
of
threat
remains
limited
to
those
obtained
with
standard
paradigms
dynamics.
present
paper,
we
applied
Switching
Linear
Dynamical
Systems
uncover
dynamics
continuous
threat-of-shock
paradigm.
First,
demonstrated
that
SLDS
model
learned
regularities
experimental
paradigm,
such
states
state
transitions
estimated
from
fMRI
time
series
data
85
regions
interest
reflected
proximity
approach
vs.
retreat.
After
establishing
captured
key
properties
threat-related
processing,
characterized
their
transitions.
Importantly,
both
endogenous
exogenous
contributions
The
results
revealed
how
can
be
viewed
terms
dynamic
multivariate
patterns
whose
trajectories
are
combination
intrinsic
extrinsic
factors
jointly
determine
brain
temporally
evolves
threat.
Furthermore,
developed
measure
region
importance
quantifies
an
individual
system
dynamics,
which
complements
system-level
characterization
is
state-space
formalism.
Finally,
generalizability
modeling
approach.
successful
application
trained
one
paradigm
separate
experiment
illustrates
potential
this
capture
generalize
across
related
but
distinct
threat-processing
tasks.
We
propose
viewing
through
lens
dynamical
systems
offers
important
avenues
not
unveiled
designs
analyses.