The Journal of Physical Chemistry B,
Год журнала:
2022,
Номер
126(37), С. 7077 - 7087
Опубликована: Сен. 9, 2022
The
remarkable
photostability
of
canonical
nucleobases
makes
them
ideal
building
blocks
for
DNA
and
RNA.
Even
minor
structural
changes
are
expected
to
lead
drastic
alteration
their
subpicosecond
excited
state
lifetimes.
However,
it
is
interesting
note
that
while
the
9H-
7H-amino
tautomers
adenine
possess
drastically
different
lifetimes,
7H-keto
guanine
similar
With
an
aim
explain
this
unexpected
difference
in
sensitivity
lifetimes
tautomerization,
we
have
investigated
relaxation
mechanism
UV-excited
using
surface
hopping
based
nonadiabatic
molecular
dynamics.
We
find
internal
conversion
both
almost
barrierless
encounter
significant
barriers
before
they
can
deactivate.
Moreover,
major
deactivation
channel
(C2-puckering)
9H-amino
overall
more
efficient
than
one
(C6-puckering)
form.
trace
frequent
rotation
amino
group
which
disrupts
its
conjugation
with
heterocyclic
ring
thereby
reducing
strength
coupling
and,
hence,
delaying
conversion.
Physical Chemistry Chemical Physics,
Год журнала:
2023,
Номер
25(46), С. 31554 - 31577
Опубликована: Янв. 1, 2023
Light-matter
interaction
not
only
plays
an
instrumental
role
in
characterizing
materials'
properties
via
various
spectroscopic
techniques
but
also
provides
a
general
strategy
to
manipulate
material
the
design
of
novel
nanostructures.
This
perspective
summarizes
recent
theoretical
advances
modeling
light-matter
interactions
chemistry,
mainly
focusing
on
plasmon
and
polariton
chemistry.
The
former
utilizes
highly
localized
photon,
plasmonic
hot
electrons,
local
heat
drive
chemical
reactions.
In
contrast,
chemistry
modifies
potential
energy
curvatures
bare
electronic
systems,
hence
their
forming
hybrid
states,
so-called
polaritons.
starts
with
basic
background
interactions,
molecular
quantum
electrodynamics
theory,
challenges
Then,
are
described,
future
directions
toward
multiscale
simulations
interaction-mediated
discussed.
Journal of Chemical Theory and Computation,
Год журнала:
2023,
Номер
19(16), С. 5356 - 5368
Опубликована: Июль 28, 2023
We
present
NEXMD
version
2.0,
the
second
release
of
(Nonadiabatic
EXcited-state
Molecular
Dynamics)
software
package.
Across
a
variety
new
features,
v2.0
incorporates
implementations
two
hybrid
quantum-classical
dynamics
methods,
namely,
Ehrenfest
(EHR)
and
Ab-Initio
Multiple
Cloning
sampling
technique
for
Multiconfigurational
quantum
(MCE-AIMC
or
simply
AIMC),
which
are
alternative
options
to
previously
implemented
trajectory
surface
hopping
(TSH)
method.
To
illustrate
these
methodologies,
we
outline
direct
comparison
three
methods
as
in
same
framework,
discussing
their
weaknesses
strengths,
using
modeled
photodynamics
polyphenylene
ethylene
dendrimer
building
block
representative
example.
also
describe
expanded
normal-mode
analysis
constraints
both
ground
excited
states,
newly
allow
deeper
main
vibrational
motions
involved
vibronic
dynamics.
Overall,
expands
range
applications
larger
multichromophore
organic
molecules
photophysical
processes
involving
coherences
persistent
couplings
between
electronic
states
nuclear
velocity.
The Journal of Physical Chemistry Letters,
Год журнала:
2024,
Номер
15(7), С. 1802 - 1810
Опубликована: Фев. 8, 2024
Near
infrared
(NIR,
700–1000
nm)
and
short-wave
(SWIR,
1000–2000
dye
molecules
exhibit
significant
nonradiative
decay
rates
from
the
first
singlet
excited
state
to
ground
state.
While
these
trends
can
be
empirically
explained
by
a
simple
energy
gap
law,
detailed
mechanisms
of
nearly
universal
behavior
have
remained
unsettled
for
many
cases.
Theoretical
experimental
results
two
representative
NIR/SWIR
reported
here
clarify
key
mechanism
observed
law
behavior.
It
is
shown
that
derivative
nonadiabatic
coupling
terms
serve
as
major
pathways
processes
NIR
SWIR
vibrational
modes
other
than
highest
frequency
also
make
contributions
rate.
This
assessment
corroborated
further
theoretical
comparison
with
possible
alternative
intersystem
crossing
triplet
states
data
deuterated
molecules.
Journal of Chemical Theory and Computation,
Год журнала:
2025,
Номер
unknown
Опубликована: Март 24, 2025
Nonadiabatic
molecular
dynamics
(NAMD)
simulations
are
crucial
for
revealing
the
underlying
mechanisms
of
photochemical
and
photophysical
processes.
Typical
NAMD
simulation
software
packages
rely
on
on-the-fly
ab
initio
electronic
structure
nonadiabatic
coupling
calculations,
thus
become
challenging
when
dealing
with
large
complex
systems.
We
here
introduce
a
new
Simulation
Package
non-Adiabatic
Dynamics
in
Extended
systems
(SPADE),
which
is
designed
to
address
limitations
traditional
surface
hopping
methods
these
problems.
By
design,
SPADE
enables
users
define
arbitrary
quasi-diabatic
Hamiltonians
through
parametrized
functions
incorporates
variety
algorithms
(e.g.,
global
flux
probabilities,
crossing
decoherence
corrections),
can
realize
efficient
reliable
without
using
couplings
at
all.
All
employed
expressions
diabatic
Hamiltonian
matrix
elements
be
flexibly
set
input
files.
mainly
written
Fortran
based
modular
design
has
great
capacity
further
implementation
methods.
used
simulate
both
model
atomistic
as
long
proper
provided.
As
demonstrations,
series
representative
models
studied
show
main
features
capabilities.
The Journal of Physical Chemistry Letters,
Год журнала:
2021,
Номер
12(11), С. 2970 - 2982
Опубликована: Март 17, 2021
Direct
atomistic
simulation
of
nonadiabatic
molecular
dynamics
is
a
challenging
goal
that
allows
important
insights
into
fundamental
physical
phenomena.
A
variety
frameworks,
ranging
from
fully
quantum
treatment
nuclei
to
semiclassical
and
mixed
quantum–classical
approaches,
were
developed.
These
algorithms
are
then
coupled
specific
electronic
structure
techniques.
Such
diversity
lack
standardized
implementation
make
it
difficult
compare
the
performance
different
methodologies
when
treating
realistic
systems.
Here,
we
three
popular
methods
for
large
chromophores:
Ehrenfest,
surface
hopping,
multiconfigurational
Ehrenfest
with
ab
initio
multiple
cloning
(MCE-AIMC).
approaches
implemented
in
NEXMD
software,
which
features
common
computational
chemistry
model.
The
resulting
comparisons
reveal
method
population
relaxation
coherent
vibronic
dynamics.
Finally,
study
numerical
convergence
MCE-AIMC
by
considering
number
trajectories,
thresholds,
Gaussian
wavepacket
width.
Our
results
provide
helpful
reference
data
selecting
an
optimal
methodology
simulating
excited-state
Journal of Chemical Theory and Computation,
Год журнала:
2023,
Номер
19(20), С. 7077 - 7096
Опубликована: Июль 17, 2023
This
paper
summarizes
developments
in
the
NWChem
computational
chemistry
suite
since
last
major
release
(NWChem
7.0.0).
Specifically,
we
focus
on
functionality,
along
with
input
blocks,
that
is
accessible
current
stable
7.2.0)
and
"master"
development
branch,
interfaces
to
quantum
computing
simulators,
external
libraries,
github
repository,
containerization
of
executable
images.
Some
ongoing
will
be
available
near
future
are
also
discussed.
Journal of Chemical Theory and Computation,
Год журнала:
2021,
Номер
17(6), С. 3629 - 3643
Опубликована: Май 20, 2021
The
recently
developed
ab
initio
multiple
cloning
(AIMC)
approach
based
on
the
multiconfigurational
Ehrenfest
(MCE)
method
provides
a
powerful
and
accurate
way
of
describing
excited-state
dynamics
molecular
systems.
AIMC
is
controlled
approximation
to
nonadiabatic
with
particular
strength
in
proper
description
decoherence
effects
because
branching
vibrational
wavepackets
at
level
crossing.
Here,
we
report
new
implementation
algorithm
open
source
NWChem
computational
chemistry
program.
framework
combines
linear-response
time-dependent
density
functional
theory
mean-field
determine
equations
motion
for
classical
trajectories.
multidimensional
wave
function
decomposed
into
superposition
Gaussian
coherent
states
guided
by
trajectories
(i.e.,
MCE
approach),
which
can
clone
fully
quantum
mechanical
amplitudes
phases.
By
using
an
efficient
time-derivative
coupling
within
method,
all
observables
are
calculated
on-the-fly
process.
As
representative
example,
apply
our
study
ultrafast
photoinduced
electronic
energy
transfer
pyridine
molecule.
procedure
coherence,
relaxation
unidirectional
discussed.
This
high-level
simulating
photoexcited
complex
systems
experimentally
relevant
spectroscopic
probes,
such
as
nonlinear
optical
X-ray
signals.
Journal of Chemical Theory and Computation,
Год журнала:
2025,
Номер
21(4), С. 1850 - 1864
Опубликована: Фев. 13, 2025
Starting
from
a
general
molecular
Hamiltonian
expressed
in
the
basis
of
adiabatic
electronic
and
nuclear
position
states,
where
compact
complete
expression
for
nonadiabatic
derivative
coupling
(NDC)
term
is
obtained,
we
provide
analysis
Fermi's
golden
rule
(FGR)
rate
transitions
between
states.
We
then
consider
quasi-adiabatic
approximation
that
uses
crude
states
NDC
couplings,
both
evaluated
at
minimum
potential
energy
configuration
initial
state,
definition
zeroth
first-order
terms
Hamiltonian.
Although
application
this
rather
limited,
it
allows
deriving
FGR
without
further
while
accounting
non-Condon
contribution
to
arising
momentum
operators
its
with
vibronic
displacements.
For
generic
widely
used
model
all
degrees
freedom
environmental
effects
are
represented
as
linearly
coupled
harmonic
oscillators,
derive
closed-form
requires
only
Fourier
transform.
The
resulting
includes
quadratic
contributions
their
couplings
Franck–Condon
modes,
which
require
evaluation
two
additional
bath
spectral
densities
addition
conventional
one
appears
typical
theory
based
on
Condon
approximation.
Model
calculations
case
vibrations
consist
sharp
high-frequency
mode
an
Ohmic
density
illustrate
new
features
implications
expression.
apply
our
theoretical
nonradiative
decay
first
excited
singlet
state
azulene,
illustrates
utility
results.
The Journal of Physical Chemistry Letters,
Год журнала:
2025,
Номер
unknown, С. 4228 - 4235
Опубликована: Апрель 21, 2025
The
synthesis
of
novel
carbon
nanostructures
with
unique
topologies
expands
the
landscape
organic
molecules,
introducing
new
chemical
properties
and
potential
applications.
Carbon
nanorings,
composed
cyclic
paraphenylene
(CPP)
chains,
serve
as
a
versatile
scaffold
for
designing
materials
molecular
architectures
that
impact
their
optical
photoinduced
dynamics.
These
alter
balance
between
competing
π-conjugation
effects,
high
bending
strain
energies,
steric
hindrances
imposed
by
rearrangement
structures.
Here,
we
explore
dynamics
all-benzene
trefoil
knot
using
nonadiabatic
excited-state
We
show
how
its
absorption
spectra
can
be
modeled
particle
in
box
constrained
to
geometry,
analyze
internal
conversion
process
following
photoexcitation.
Our
findings
reveal
an
exciton
intraring
migration
governed
winding
chain,
ultimately
leading
self-trapping
at
specific
curvature
regions
knot.
This
behavior
contrasts
nondeterministic
corresponding
CPP,
where
localization
occurs
randomly
across
different
phenylene
units.
results
highlight
ability
knots
control
through
curvature,
tension,
planarization
positioning
these
promising
candidates
future
technological
precisely
manipulate
electronic
characteristics
is
essential
developing
more
efficient
devices.