Structure‐Based Design of Bicyclic Helical Peptides That Target the Oncogene β‐Catenin DOI Creative Commons
Alejandro Yeste‐Vázquez, Felix M. Paulussen, Mathias Wendt

и другие.

Angewandte Chemie, Год журнала: 2024, Номер 136(47)

Опубликована: Авг. 22, 2024

Abstract The inhibition of intracellular protein‐protein interactions is challenging, in particular, when involved interfaces lack pronounced cavities. transcriptional co‐activator protein and oncogene β‐catenin a prime example such challenging target. Despite extensive targeting efforts, available high‐affinity binders comprise only large molecular weight inhibitors. This hampers the further development therapeutically useful compounds. Herein, we report design considerably smaller peptidomimetic scaffold derived from α‐helical β‐catenin‐binding motif Axin. Sequence maturation bicyclization provided stitched peptide with an unprecedented crosslink architecture. binding mode site were confirmed by crystal structure. Further derivatization yielded inhibitor single‐digit micromolar activity cell‐based assay. study sheds light on how to helix mimetics reduced thereby improving their biological activity.

Язык: Английский

Structure-activity relationships of middle-size cyclic peptides, KRAS inhibitors derived from an mRNA display DOI

Mirai Kage,

Ryuji Hayashi, Atsushi Matsuo

и другие.

Bioorganic & Medicinal Chemistry, Год журнала: 2024, Номер 110, С. 117830 - 117830

Опубликована: Июль 6, 2024

Язык: Английский

Процитировано

3

Breaking the Degeneracy of Sense Codons – How Far Can We Go? DOI Creative Commons

Clark A. Jones,

Matthew C. T. Hartman

Israel Journal of Chemistry, Год журнала: 2024, Номер unknown

Опубликована: Авг. 6, 2024

Abstract Genetic code expansion aims to incorporate non‐canonical amino acids (ncAAs) into biological systems, enhancing protein functionality or enabling the in vitro selection of peptides from diverse mRNA displayed libraries. Typically, genetic has involved reassignment stop codons ncAAs through orthogonal translation systems. This review instead focuses on efforts expand by breaking redundancy sense and vivo. In vivo, aminoacyl‐tRNA synthetase (AARS)/tRNA/AA systems are able compete with endogenous machinery, partial full codon reassignment. Recent approaches, like genome recoding, offer potential solutions reduce competition. studies utilize cell extract‐based reconstituted allowing precise control usage via gene design tRNA addition, making degeneracy easier. these several unsplit boxes have been successfully reassigned multiple ncAAs. These showcase both successes challenges achieving orthogonality selective decoding point towards a future where 64 can encode more than 30 monomers, new advances synthetic biology drug discovery.

Язык: Английский

Процитировано

3

Peptide inhibitors targeting Ras and Ras-associated protein–protein interactions DOI
Dan Han,

Anpeng Li,

Lie Zhu

и другие.

European Journal of Medicinal Chemistry, Год журнала: 2024, Номер 279, С. 116878 - 116878

Опубликована: Сен. 19, 2024

Язык: Английский

Процитировано

3

Isolation, Total Synthesis and the Structure Determination of the Antifungal Macrocyclic Depsipeptide, Tetraselide DOI Creative Commons
H. Nakahara, Goh Sennari,

Haruki Azami

и другие.

Опубликована: Май 31, 2024

Macrocyclic peptides and depsipeptides are the emerging class of a new modality in drug discovery research. Tetraselide, an antifungal cyclic peptide isolated from marine-derived filamentous fungus, possesses unique amphiphilic structural feature that represents five consecutive β-hydroxy-amino acid fatty moieties. Because structure elucidation naturally occurring product left six stereocenters ambiguous, we implemented bioinformatic analyses, chemical degradation study chiral pool fragment synthesis to identify two undetermined stereochemistry. Convergent total four remaining plausible isomers tetraselide was accomplished via liquid-phase using soluble hydrophobic tag auxiliaries. The key advance involves coupling by serine/threonine ligation reaction head-to-tail macrolactamization carrier-supported precursors enabled systematic elaboration peptides. Ultimately, determined absolute this natural product.

Язык: Английский

Процитировано

2

Structure‐Based Design of Bicyclic Helical Peptides That Target the Oncogene β‐Catenin DOI Creative Commons
Alejandro Yeste‐Vázquez, Felix M. Paulussen, Mathias Wendt

и другие.

Angewandte Chemie, Год журнала: 2024, Номер 136(47)

Опубликована: Авг. 22, 2024

Abstract The inhibition of intracellular protein‐protein interactions is challenging, in particular, when involved interfaces lack pronounced cavities. transcriptional co‐activator protein and oncogene β‐catenin a prime example such challenging target. Despite extensive targeting efforts, available high‐affinity binders comprise only large molecular weight inhibitors. This hampers the further development therapeutically useful compounds. Herein, we report design considerably smaller peptidomimetic scaffold derived from α‐helical β‐catenin‐binding motif Axin. Sequence maturation bicyclization provided stitched peptide with an unprecedented crosslink architecture. binding mode site were confirmed by crystal structure. Further derivatization yielded inhibitor single‐digit micromolar activity cell‐based assay. study sheds light on how to helix mimetics reduced thereby improving their biological activity.

Язык: Английский

Процитировано

2