MBX V1.2: Accelerating Data-Driven Many-Body Molecular Dynamics Simulations
Journal of Chemical Theory and Computation,
Год журнала:
2025,
Номер
unknown
Опубликована: Фев. 14, 2025
The
MBX
software
provides
an
advanced
platform
for
molecular
dynamics
simulations,
leveraging
state-of-the-art
MB-pol
and
MB-nrg
data-driven
many-body
potential
energy
functions.
Developed
over
the
past
decade,
these
functions
integrate
physics-based
machine-learned
terms
trained
on
electronic
structure
data
calculated
at
"gold
standard"
coupled-cluster
level
of
theory.
Recent
advancements
in
have
focused
optimizing
its
performance,
resulting
release
v1.2.
While
inherently
nature
ensures
high
accuracy,
it
poses
computational
challenges.
v1.2
addresses
challenges
with
significant
performance
improvements,
including
enhanced
parallelism
that
fully
harnesses
power
modern
multicore
CPUs.
These
enable
simulations
nanosecond
time
scales
condensed-phase
systems,
significantly
expanding
scope
high-accuracy,
predictive
complex
systems
powered
by
Язык: Английский
Nuclear Quantum Effects in Neutral Water Clusters at Finite Temperature: Structural Evolution from Two to Three Dimensions
The Journal of Physical Chemistry Letters,
Год журнала:
2025,
Номер
unknown, С. 3004 - 3011
Опубликована: Март 17, 2025
Understanding
the
structure
of
bulk
water
presents
a
significant
challenge
due
to
its
intricate
hydrogen
bond
network
and
dynamic
properties.
Neutral
clusters,
serving
as
fundamental
building
blocks,
provide
key
insights
into
configurations
intermolecular
interactions,
thereby
establishing
critical
foundation
for
elucidating
behavior
liquid
water.
In
this
study,
state-of-the-art
quantum
simulations
utilizing
many-body
potential
are
employed
investigate
influence
nuclear
effects
(NQEs)
on
structural
evolution
neutral
clusters
(H2O)n
(n
=
2–10).
For
pentamer
at
finite
temperature,
demonstrate
that
NQEs
substantially
facilitate
transition
from
two-dimensional
(2D)
three-dimensional
(3D)
configurations.
The
population
3D
isomers
is
governed
by
synergistic
interplay
among
thermal
fluctuates
NQEs.
hexamers
with
fully
structures,
uncover
lower-energy
pathway
prism
book
via
cage-like
intermediate―a
not
observed
in
classical
simulations.
These
findings
highlight
crucial
role
theoretical
framework
explore
properties
condensed-phase
Язык: Английский
Short-Range Δ-Machine Learning: A Cost-Efficient Strategy to Transfer Chemical Accuracy to Condensed Phase Systems
Journal of Chemical Theory and Computation,
Год журнала:
2025,
Номер
unknown
Опубликована: Май 28, 2025
DFT-based
machine-learning
potentials
(MLPs)
are
now
routinely
trained
for
condensed-phase
systems,
but
surpassing
DFT
accuracy
remains
challenging
due
to
the
cost
or
unavailability
of
periodic
reference
calculations.
Our
previous
work
(
Phys.
Rev.
Lett.
2022,
129,
226001)
demonstrated
that
high-accuracy
MLPs
can
be
within
CCMD
framework
using
extended
yet
finite
Here,
we
introduce
short-range
Δ-Machine
Learning
(srΔML),
a
method
starts
from
baseline
MLP
on
low-level
data
and
adds
Δ-MLP
correction
based
high-level
cluster
calculations
at
CC
level.
Applied
liquid
water,
srΔML
reduces
required
size
(H2O)64
(H2O)15
significantly
lowers
number
clusters
needed,
resulting
in
50-200×
reduction
computational
cost.
The
potential
closely
reproduces
target
accurately
captures
both
two-
three-body
structural
descriptors.
Язык: Английский