Microbial influencers and cotton leaf curl disease (CLCuD) susceptibility: a network perspective DOI Creative Commons
Rhea Aqueel, Ayesha Badar, Umer Zeeshan Ijaz

и другие.

Frontiers in Microbiology, Год журнала: 2024, Номер 15

Опубликована: Июнь 17, 2024

Biotic stresses, such as plant viruses, e.g., cotton leaf curl virus (CLCuV), can alter root-associated and leaf-associated microbial diversities in plants. There are complex ecological dynamics at play, with each microbe contributing to a multitude of biotic abiotic interactions, thus deciding the stability plant’s ecosystem response disease. Deciphering these networks interactions is challenging task. The inferential research microbiome also nascent stage, often constrained by underlying analytical assumptions limitations respect depth sequencing. no real consensus on network-wide statistics identify influential players network. Guided latest developments network science, including recently published metrics Integrated View Influence (IVI) some other centrality measures, this study provides an exposé most nodes rhizospheric phyllospheric disease (CLCuD) susceptible, partially tolerant, resistant varieties. It evident from our results that CLCuD-resistant Gossypium arboreum possesses equal share keystone species, which helps it withstand pressures. In variety, phyllosphere harbors nodes, whereas susceptible they present rhizosphere. Based hubness score, spreading IVI, top 10 occurring species FDH-228 (resistant) variety include Actinokineospora, Cohnella, Thermobacillus, Clostridium, Desulfofarcimen, MDD-D21. Elusimicrobia, Clostridium-sensu-stricto_12, Candidatus woesebacteria, Dyella were identified PFV-1 (partially tolerant) variety. PFV-2 (susceptible) Georginia, Nesterenkonia, Elusimicrobia MVP-88, Acetivibrio, Tepedisphaerales, Chelatococcus, Nitrosospira, RCP2-54 . This concept deciphers diseased healthy viral disease, may be microbially mediated.

Язык: Английский

Dynamic microbiome disassembly and evolution induced by antimicrobial methylisothiazolinone in sludge anaerobic fermentation for volatile fatty acids generation DOI
Shiyu Fang, Jiashun Cao, Qian Wu

и другие.

Water Research, Год журнала: 2024, Номер 251, С. 121139 - 121139

Опубликована: Янв. 15, 2024

Язык: Английский

Процитировано

34
Deciphering endogenous and exogenous regulations of anammox consortia in responding to lincomycin by multiomics: quorum sensing and CRISPR system DOI

Dong-Qi Huang,

Qian Wu, Jiahui Yang

и другие.

Water Research, Год журнала: 2023, Номер 239, С. 120061 - 120061

Опубликована: Май 15, 2023

Язык: Английский

Процитировано

31
Bioremediation of organohalide pollutants: progress, microbial ecology, and emerging computational tools DOI
Guofang Xu, Siyan Zhao, Jinting Liu

и другие.

Current Opinion in Environmental Science & Health, Год журнала: 2023, Номер 32, С. 100452 - 100452

Опубликована: Янв. 29, 2023

Язык: Английский

Процитировано

26
Autochthonous bioaugmentation accelerates phenanthrene degradation in acclimated soil DOI Creative Commons

Haiping Gu,

Jie Yan, Yuhao Liu

и другие.

Environmental Research, Год журнала: 2023, Номер 224, С. 115543 - 115543

Опубликована: Фев. 21, 2023

Bioaugmentation helps to obtain a microbiome capable of remediating polycyclic aromatic hydrocarbons (PAHs). In this study, acclimation microorganisms soil supplemented with phenanthrene (PHE) led enrichment PAH-degraders, including those in Actinobacteriota and the genera Streptomyces, Rhodococcus, Nocardioides, Sphingomonas, Mycobacterium. Aqueous (28 °C, pH 6.5) cultures inoculated PHE-acclimated showed high PHE (ca. 50 mg L−1) degradation efficiency. The kinetics aqueous incubations fitted Gompertz equation first-order kinetic equation, respectively. Indigenous adapted their environment, increased capacity degrade PHE. effect co-contaminants pathway intermediates on that improved presence diesel while being hindered by lubricant oil, catechol, salicylic phthalic acid. Our findings provide theoretical practical support for bioremediationof PAHs environment.

Язык: Английский

Процитировано

25
Biodiversity of the beneficial soil-borne fungi steered by Trichoderma-amended biofertilizers stimulates plant production DOI Creative Commons
Yan Wang, Zhengyang Liu,

Xinyi Hao

и другие.

npj Biofilms and Microbiomes, Год журнала: 2023, Номер 9(1)

Опубликована: Июль 5, 2023

Abstract The soil microbiota is critical to plant performance. Improving the ability of plant-associated probiotics thus essential for establishing dependable and sustainable crop yields. Although fertilizer applications may provide an effective way steering microbes, it still unknown how positive effects soil-borne can be maximized their are mediated. This work aims seek ecological mechanisms involved in cabbage growth using bio-organic fertilizers. We conducted a long-term field experiment which we amended with non-sterilized organic or sterilized either containing Trichoderma guizhouense NJAU4742 lacking this inoculum tracked fungal community. -amended fertilizers significantly increased biomass effect was attributed changes resident community composition, including increase relative abundance number indigenous growth-promoting taxa. specifically highlight fundamental role biodiversity population density these plant-beneficial taxa improving growth. Together, our results suggest that beneficial seem combination biological within amendment as well indirect promotion through on diversity composition microbiome.

Язык: Английский

Процитировано

25
Exploring the potentials of indigenous Saccharomyces cerevisiae and Pichia kudriavzevii for enhancing flavour and aromatic characteristics in apricot wines DOI Creative Commons
Yu Chen,

Xingmeng Lei,

Li Sun

и другие.

Food Chemistry X, Год журнала: 2025, Номер 25, С. 102178 - 102178

Опубликована: Янв. 1, 2025

In this study, we investigated the oenological performance of key yeast populations previously identified from apricot wine fermentation, aiming to obtain indigenous starters suitable for production. Twenty-one isolates were characterized physiologically, and two each Saccharomyces cerevisiae Pichia kudriavzevii selected laboratory-scale fermentations. Results showed that S. S9 exhibited significantly higher sugar consumption than S2 CECA strains, with former demonstrating a fructophilic character. Mixed fermentations P. N11 N12 resulted in lower citric acid content (decreasing by 12-25 %) glycerol levels (increasing 12-47 compared pure fermentation. mixed species supported survival kudriavzevii, effectively enhancing fruity esters terpenes wine. This study provides technical support screening specialized

Язык: Английский

Процитировано

2
Recent insights into aquatic viruses: Emerging and reemerging pathogens, molecular features, biological effects, and novel investigative approaches DOI Creative Commons

Qi-Ya Zhang,

Fei Ke, Lang Gui

и другие.

Water Biology and Security, Год журнала: 2022, Номер 1(4), С. 100062 - 100062

Опубликована: Июль 31, 2022

Aquatic viruses are naturally present in the aquatic environment and number of is staggering. Various multicellular organisms ecosystems may be infected, cross-species transmitted, manipulated, killed by viruses, which can lead to cascading ecological effects. The unicellular alter interactions between host individuals, essential effecting or maintaining dynamics microbial communities, horizontal gene transfer, biodiversity, modulating processes globally. Meanwhile, hosts also impact viral abundance diversity. Microbial diversity drives multifunctionality ecosystems, while shape complex communities crucial for ecosystem functioning. This review focuses on molecular, genetic, evolutionary, ecosystemic advances related emerging reemerging presents contexts, novel tools, investigative approaches pertaining study virology, discusses mechanisms affect ecosystems. paper provides an efficient broadly-based blueprint improving understanding viruses.

Язык: Английский

Процитировано

37
Novel microbial consortia facilitate metalliferous immobilization in non-ferrous metal(loid)s contaminated smelter soil: Efficiency and mechanisms DOI
Miaomiao Li, Jun Yao, Geoffrey I. Sunahara

и другие.

Environmental Pollution, Год журнала: 2022, Номер 313, С. 120042 - 120042

Опубликована: Авг. 28, 2022

Язык: Английский

Процитировано

24
Illumination and reconstruction of keystone microbiota for reproduction of key flavor-active volatile compounds during paocai (a traditional fermented vegetable) fermentation DOI
Nan Zhao,

Yuli Huang,

Haimei Lai

и другие.

Food Bioscience, Год журнала: 2023, Номер 56, С. 103148 - 103148

Опубликована: Сен. 23, 2023

Язык: Английский

Процитировано

16
Characterizing a stable five-species microbial community for use in experimental evolution and ecology DOI
Meaghan Castledine,

Joseph Pennycook,

Arthur Newbury

и другие.

Microbiology, Год журнала: 2024, Номер 170(9)

Опубликована: Сен. 19, 2024

Model microbial communities are regularly used to test ecological and evolutionary theory as they easy manipulate have fast generation times, allowing for large-scale, high-throughput experiments. A key assumption most model is that stably coexist, but this rarely tested experimentally. Here we report the (dis)assembly of a five-species community from metacommunity soil microbes can be future Using reciprocal invasion-from-rare experiments show all species coexist demonstrate stable long time (~600 generations). Crucially work, each identified by their plate morphologies, even after >1 year in co-culture. We characterise pairwise interactions produce high-quality reference genomes species. This questions ecology evolution.

Язык: Английский

Процитировано

6