bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Окт. 23, 2023
Abstract
Cortical
activity
results
from
the
interplay
between
network-connected
regions
that
integrate
information
and
stimulus-driven
processes
originating
sensory
motor
networks
responding
to
specific
tasks.
Separating
due
each
of
these
components
has
been
challenging,
relationship
as
measured
by
fMRI
in
cases
Rest
(network)
Task
(stimulus
driven)
remains
a
significant
outstanding
question
study
large-scale
brain
dynamics.
In
this
study,
we
developed
network
ordinary
differential
equation
(ODE)
model
using
advanced
system
identification
tools
analyze
data
both
rest
task
conditions.
We
demonstrate
task-specific
ODEs
are
essentially
subset
rest-specific
across
four
different
tasks
Human
Connectome
Project.
By
assuming
is
relative
complement
activity,
our
significantly
improves
predictions
reaction
times
on
trial-by-trial
basis,
leading
9
%
increase
explanatory
power
(
R
2
)
all
14
tested
subtasks.
Our
findings
establish
principle
Active
Cortex
Model,
which
posits
cortex
always
active
State
encompasses
processes,
while
certain
subsets
get
elevated
perform
computations.
This
offers
crucial
perspective
nature
dynamics
introduces
one
first
models
causally
link
equations
representing
dynamics,
behavioral
variables
within
single
framework.
Nature Communications,
Год журнала:
2023,
Номер
14(1)
Опубликована: Май 23, 2023
Abstract
To
better
understand
how
network
structure
shapes
intelligent
behavior,
we
developed
a
learning
algorithm
that
used
to
build
personalized
brain
models
for
650
Human
Connectome
Project
participants.
We
found
participants
with
higher
intelligence
scores
took
more
time
solve
difficult
problems,
and
slower
solvers
had
average
functional
connectivity.
With
simulations
identified
mechanistic
link
between
connectivity,
intelligence,
processing
speed
synchrony
trading
accuracy
in
dependence
of
excitation-inhibition
balance.
Reduced
led
decision-making
circuits
quickly
jump
conclusions,
while
allowed
integration
evidence
robust
working
memory.
Strict
tests
were
applied
ensure
reproducibility
generality
the
obtained
results.
Here,
identify
links
function
enable
learn
connectome
topology
from
noninvasive
recordings
map
it
inter-individual
differences
suggesting
broad
utility
research
clinical
applications.
medRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 10, 2025
Abstract
Brain
structure
plays
a
pivotal
role
in
shaping
neural
dynamics.
Current
models
lack
the
anatomical
and
functional
resolution
needed
to
accurately
capture
both
structural
dynamical
features
of
human
brain.
Here,
we
introduce
FEDE
(high
FidElity
Digital
brain
modEl)
pipeline,
generating
anatomically
accurate
digital
twins
from
imaging
data.
Using
advanced
techniques
tissue
segmentation
finite-element
analysis,
reconstructs
with
high
spatial
resolution,
while
also
replicating
whole-brain
activity.
We
demonstrated
its
application
by
creating
first
twin
toddler
autism
spectrum
disorder
(ASD).
Through
parameter
optimization,
replicated
time-frequency
recorded
Notably,
predicted
patient-specific
aberrant
values
excitation
inhibition
ratio,
coherently
ASD
pathophysiology.
represents
significant
leap
forward
modeling,
paving
way
for
more
effective
applications
experimental
clinical
settings.
Machine Learning Science and Technology,
Год журнала:
2024,
Номер
5(3), С. 035019 - 035019
Опубликована: Июль 11, 2024
Abstract
Connectome-based
models,
also
known
as
virtual
brain
models
(VBMs),
have
been
well
established
in
network
neuroscience
to
investigate
pathophysiological
causes
underlying
a
large
range
of
diseases.
The
integration
an
individual’s
imaging
data
VBMs
has
improved
patient-specific
predictivity,
although
Bayesian
estimation
spatially
distributed
parameters
remains
challenging
even
with
state-of-the-art
Monte
Carlo
sampling.
imply
latent
nonlinear
state
space
driven
by
noise
and
input,
necessitating
advanced
probabilistic
machine
learning
techniques
for
widely
applicable
estimation.
Here
we
present
simulation-based
inference
on
(SBI-VBMs),
demonstrate
that
training
deep
neural
networks
both
spatio-temporal
functional
features
allows
accurate
generative
disorders.
systematic
use
stimulation
provides
effective
remedy
the
non-identifiability
issue
estimating
degradation
limited
smaller
subset
connections.
By
prioritizing
model
structure
over
data,
show
hierarchical
SBI-VBMs
renders
more
effective,
precise
biologically
plausible.
This
approach
could
broadly
advance
precision
medicine
enabling
fast
reliable
prediction
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Апрель 26, 2024
Traveling
waves
and
neural
oscillation
frequency
gradients
are
pervasive
in
the
human
cortex.
While
direction
of
traveling
has
been
linked
to
brain
function
dysfunction,
factors
that
determine
this
remain
elusive.
We
hypothesized
structural
connectivity
instrength
-
defined
as
gradually
varying
sum
incoming
connection
strengths
across
cortex
could
shape
both
wave
gradients.
confirm
presence
connectome
diverse
cohorts
parcellations.
Using
a
cortical
network
model,
we
demonstrate
how
these
direct
Our
model
fits
resting-state
MEG
functional
best
regime
where
instrength-directed
emerge.
further
show
subnetworks
generate
opposing
directions
observed
alpha
beta
bands.
findings
suggest
affect
Applied Sciences,
Год журнала:
2025,
Номер
15(1), С. 392 - 392
Опубликована: Янв. 3, 2025
Brain–computer
interface
(BCI)
technologies
for
language
decoding
have
emerged
as
a
transformative
bridge
between
neuroscience
and
artificial
intelligence
(AI),
enabling
direct
neural–computational
communication.
The
current
literature
provides
detailed
insights
into
individual
components
of
BCI
systems,
from
neural
encoding
mechanisms
to
paradigms
clinical
applications.
However,
comprehensive
perspective
that
captures
the
parallel
evolution
cognitive
understanding
technological
advancement
in
BCI-based
remains
notably
absent.
Here,
we
propose
Interpretation–Communication–Interaction
(ICI)
architecture,
novel
three-stage
an
analytical
lens
examining
development.
Our
analysis
reveals
field’s
basic
signal
interpretation
through
dynamic
communication
intelligent
interaction,
marked
by
three
key
transitions:
single-channel
multimodal
processing,
traditional
pattern
recognition
deep
learning
architectures,
generic
systems
personalized
platforms.
This
review
establishes
has
achieved
substantial
improvements
regard
system
accuracy,
latency
reduction,
stability,
user
adaptability.
proposed
ICI
architecture
bridges
gap
computational
methodologies,
providing
unified
evolution.
These
offer
valuable
guidance
future
innovations
their
practical
application
assistive
contexts.
Communications Medicine,
Год журнала:
2025,
Номер
5(1)
Опубликована: Янв. 15, 2025
Alzheimer's
disease
(AD)
is
a
serious
neurodegenerative
disorder
without
clear
understanding
of
pathophysiology.
Recent
experimental
data
have
suggested
neuronal
excitation-inhibition
(E-I)
imbalance
as
an
essential
element
AD
pathology,
but
E-I
has
not
been
systematically
mapped
out
for
either
local
or
large-scale
circuits
in
AD,
precluding
precise
targeting
treatment.
In
this
work,
we
apply
Multiscale
Neural
Model
Inversion
(MNMI)
framework
to
the
resting-state
functional
MRI
from
Disease
Neuroimaging
Initiative
(ADNI)
identify
brain
regions
with
disrupted
balance
large
network
during
progression.
We
observe
that
both
intra-regional
and
inter-regional
progressively
cognitively
normal
individuals,
mild
cognitive
impairment
(MCI)
AD.
Also,
find
inhibitory
connections
are
more
significantly
impaired
than
excitatory
ones
strengths
most
reduced
MCI
leading
gradual
decoupling
neural
populations.
Moreover,
reveal
core
comprised
mainly
limbic
cingulate
regions.
These
exhibit
consistent
alterations
across
thus
may
represent
important
biomarkers
therapeutic
targets.
Lastly,
multiple
found
be
correlated
test
score.
Our
study
constitutes
attempt
delineate
progression,
which
facilitate
development
new
treatment
paradigms
restore
physiological
The
cells
within
brain,
neurons,
communicate
using
activity.
Excitation-inhibition
measure
contribution
communication.
memory,
thinking
reasoning
disrupted.
people
applied
computational
model
imaging
could
potentially
used
treatments
developed
improve
balance,
possibly
improving
symptoms
Li
et
al.
multiscale
modeling
approach
scale
based
on
MRI.
concentrates
regions,
long-range
subjects
impairment,
European Journal of Neuroscience,
Год журнала:
2025,
Номер
61(5)
Опубликована: Март 1, 2025
ABSTRACT
Although
the
brain
is
often
characterized
as
a
complex
system,
theoretical
and
philosophical
frameworks
struggle
to
capture
this.
For
example,
mainstream
mechanistic
accounts
model
neural
systems
fixed
static
in
ways
that
fail
their
dynamic
nature
large
set
of
possible
behaviors.
In
this
paper,
we
provide
framework
for
capturing
common
type
system
neuroscience,
which
involves
two
main
aspects:
(i)
constraints
on
(ii)
system's
possibility
space
available
outcomes.
Our
analysis
merges
neuroscience
examples
with
recent
work
philosophy
science
suggest
concept
essential
types
constraints,
call
hard
soft
constraints.
focuses
domain‐general
notion
present
manifold
representations,
phase
diagrams
dynamical
theory,
paradigmatic
cases,
such
Waddington's
epigenetic
landscape
model.
After
building
apply
it
three
neuroscience:
adaptability,
resilience,
phenomenology.
We
explore
how
supports
toolkit
helps
advance
scientific
explanations,
impossibility
explanations.
show
fruitful
connections
between
can
support
conceptual
clarity,
advances,
identification
similar
across
different
domains
neuroscience.
Importance:
Pathological
perturbations
of
the
brain
often
spread
via
connectome
to
fundamentally
alter
functional
consequences.
By
integrating
multimodal
neuroimaging
data
with
mathematical
neural
mass
modeling,
network
models
(BNMs)
enable
quantitatively
characterize
aberrant
dynamics
underlying
multiple
neurological
and
psychiatric
disorders.
We
delved
into
advancements
BNM-based
medical
applications,
discussed
prevalent
challenges
within
this
field,
provided
possible
solutions
future
directions.
Highlights:
This
paper
reviewed
theoretical
foundations
current
applications
computational
BNMs.
Composed
models,
BNM
framework
allows
investigate
large-scale
behind
diseases
by
linking
simulated
signals
empirical
neurophysiological
data,
has
shown
promise
in
exploring
neuropathological
mechanisms,
elucidating
therapeutic
effects,
predicting
disease
outcome.
Despite
that
several
limitations
existed,
one
promising
trend
research
field
is
precisely
guide
clinical
neuromodulation
treatment
based
on
individual
simulation.
Conclusion:
carries
potential
help
understand
mechanism
how
neuropathology
affects
dynamics,
further
contributing
decision-making
diagnosis
treatment.
Several
constraints
must
be
addressed
surmounted
pave
way
for
its
utilization
clinic.
eNeuro,
Год журнала:
2023,
Номер
10(9), С. ENEURO.0091 - 23.2023
Опубликована: Сен. 1, 2023
As
the
European
Flagship
Human
Brain
Project
(HBP)
ends
in
September
2023,
a
meeting
dedicated
to
Partnering
Projects
(PPs),
collective
of
independent
research
groups
that
partnered
with
HBP,
was
held
on
4–7,
2022.
The
purpose
this
allow
these
present
their
results,
reflect
collaboration
HBP
and
discuss
future
interactions
Research
Infrastructure
(RI)
EBRAINS
has
emerged
from
HBP.
In
report,
we
share
tour-de-force
were
have
made
furthering
knowledge
concerning
various
aspects
We
describe
briefly
major
achievements
terms
systems-level
understanding
functional
architecture
brain
its
possible
emulation
artificial
systems.
then
recapitulate
open
discussions
representatives
about
evolution
as
sustainable
for
after
also
wider
scientific
community.