Spatiotemporal transcriptomic profiling and modeling of mouse brain at single-cell resolution reveals cell proximity effects of aging and rejuvenation DOI
Eric Sun, Olivia Y. Zhou, Max Hauptschein

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Июль 19, 2024

Old age is associated with a decline in cognitive function and an increase neurodegenerative disease risk

Язык: Английский

Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex DOI Creative Commons
Christina Koupourtidou, Veronika Schwarz, Hananeh Aliee

и другие.

Nature Communications, Год журнала: 2024, Номер 15(1)

Опубликована: Апрель 3, 2024

Traumatic brain injury leads to a highly orchestrated immune- and glial cell response partially responsible for long-lasting disability the development of secondary neurodegenerative diseases. A holistic understanding mechanisms controlling responses specific types their crosstalk is required develop an efficient strategy better regeneration. Here, we combine spatial single-cell transcriptomics chart transcriptomic signature injured male murine cerebral cortex, identify states different cells contributing this signature. Interestingly, distinct share large fraction injury-regulated genes, including inflammatory programs downstream innate immune-associated pathways Cxcr3 Tlr1/2. Systemic manipulation these decreases reactivity state associated with poor The functional relevance discovered shared highlights importance our resource enabling comprehensive analysis early events after injury.

Язык: Английский

Процитировано

15

Microglia as integrators of brain-associated molecular patterns DOI
Caroline C. Escoubas, Anna V. Molofsky

Trends in Immunology, Год журнала: 2024, Номер 45(5), С. 358 - 370

Опубликована: Апрель 23, 2024

Язык: Английский

Процитировано

14

Label-Free Techniques for Probing Biomolecular Condensates DOI
Khalid A. Ibrahim,

Akhil S. Naidu,

Helena Miljkovic

и другие.

ACS Nano, Год журнала: 2024, Номер 18(16), С. 10738 - 10757

Опубликована: Апрель 12, 2024

Biomolecular condensates play important roles in a wide array of fundamental biological processes, such as cellular compartmentalization, regulation, and other biochemical reactions. Since their discovery first observations, an extensive expansive library tools has been developed to investigate various aspects properties, encompassing structural compositional information, material evolution throughout the life cycle from formation eventual dissolution. This Review presents overview expanded set methods that researchers use probe properties biomolecular across diverse scales length, concentration, stiffness, time. In particular, we review recent years' exciting development label-free techniques methodologies. We broadly organize into 3 categories: (1) imaging-based techniques, transmitted-light microscopy (TLM) Brillouin (BM), (2) force spectroscopy atomic (AFM) optical tweezer (OT), (3) microfluidic platforms emerging technologies. point out tools' key opportunities, challenges, future perspectives analyze correlative potential well compatibility with techniques. Additionally, namely, differential dynamic (DDM) interferometric scattering (iSCAT), have huge for applications studying condensates. Finally, highlight how some these can be translated diagnostics therapy purposes. hope this serves useful guide new field aids advancing biophysical study

Язык: Английский

Процитировано

11

Spatial transcriptomics data and analytical methods: An updated perspective DOI

Mohd Danishuddin,

Shawez Khan, Jong-Joo Kim

и другие.

Drug Discovery Today, Год журнала: 2024, Номер 29(3), С. 103889 - 103889

Опубликована: Янв. 18, 2024

Язык: Английский

Процитировано

8

Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function DOI Creative Commons
Luise A. Seeker,

Nadine Bestard-Cuche,

Sarah Jäkel

и другие.

Acta Neuropathologica Communications, Год журнала: 2023, Номер 11(1)

Опубликована: Май 22, 2023

Abstract The myelinated white matter tracts of the central nervous system (CNS) are essential for fast transmission electrical impulses and often differentially affected in human neurodegenerative diseases across CNS region, age sex. We hypothesize that this selective vulnerability is underpinned by physiological variation glia. Using single nucleus RNA sequencing post-mortem samples from brain, cerebellum spinal cord subsequent tissue-based validation we found substantial glial heterogeneity with tissue region: identified region-specific oligodendrocyte precursor cells (OPCs) retain developmental origin markers into adulthood, distinguishing them mouse OPCs. Region-specific OPCs give rise to similar populations, however oligodendrocytes exhibit such as SKAP2 which associated increased myelin production a population particularly equipped producing long thick sheaths based on expression genes/proteins HCN2 . Spinal microglia more activated phenotype compared brain microglia, suggesting pro-inflammatory environment, difference intensifies age. Astrocyte gene correlates strongly however, astrocytes do not show state region or Across all glia, sex differences subtle but consistent protein-folding genes male donors hints at pathways may contribute disease susceptibility. These findings consider understanding pathologies developing tailored therapeutic strategies.

Язык: Английский

Процитировано

20

Lesion-remote astrocytes govern microglia-mediated white matter repair DOI Open Access
Sarah McCallum, Keshav B. Suresh,

Timothy Islam

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Март 17, 2024

Spared regions of the damaged central nervous system undergo dynamic remodeling and exhibit a remarkable potential for therapeutic exploitation. Here, lesion-remote astrocytes (LRAs), which interact with viable neurons, glia neural circuitry, reactive transformations whose molecular functional properties are poorly understood. Using multiple transcriptional profiling methods, we interrogated LRAs from spared mouse spinal cord following traumatic injury (SCI). We show that acquire spectrum molecularly distinct, neuroanatomically restricted reactivity states evolve after SCI. identify transcriptionally unique in degenerating white matter direct specification function local microglia clear lipid-rich myelin debris to promote tissue repair. Fueling this LRA adaptation is Ccn1 , encodes secreted matricellular protein. Loss astrocyte CCN1 leads excessive, aberrant activation (i) abnormal specification, (ii) dysfunctional processing, (iii) impaired lipid metabolism, culminating blunted clearance attenuated neurological recovery -expressing specifically induced by damage generated diverse demyelinating disorders human, pointing their fundamental, evolutionarily conserved role Our findings assume regionally divergent adaptations context-specific triggers influence disorder outcome. Astrocytes tile (CNS) where they serve vital roles uphold healthy function, including regulation synapse development, buffering neurotransmitters ions, provision metabolic substrates 1 . In response CNS insults, disorder-context specific collectively referred as 2-5 The characteristics distinct incompletely mechanisms through arise, how or resolve over time, consequences cell progression remain enigmatic. Immediately adjacent lesions, border-forming (BFAs) reprogramming proliferation form neuroprotective barrier restricts inflammation supports axon regeneration 6-9 Beyond lesion, but injured varying degrees synaptic circuit progressive cellular responses secondary have profound repair 10,11 Throughout these cytoarchitecturally intact, injury-reactive regions, (LRAs) intermingle neurons glia, little no proliferation, hypertrophy 7,12,13 grossly undefined. Therapeutically harnessing will require clearer understanding accompanying landscape. leveraged integrative methodologies spatiotemporally resolved, within cord. Computational modeling LRA-mediated heterotypic interactions, astrocyte-specific conditional gene deletion, models acute chronic degeneration were used interrogate newly identified degeneration-reactive subtype. define state its governing

Язык: Английский

Процитировано

5

A Review of the Application of Spatial Transcriptomics in Neuroscience DOI
Le Zhang,

Zhenqi Xiong,

Ming Xiao

и другие.

Interdisciplinary Sciences Computational Life Sciences, Год журнала: 2024, Номер 16(2), С. 243 - 260

Опубликована: Фев. 20, 2024

Язык: Английский

Процитировано

4

A practical guide to spatial transcriptomics DOI
Lukás Valihrach, Daniel Žucha, Pavel Abaffy

и другие.

Molecular Aspects of Medicine, Год журнала: 2024, Номер 97, С. 101276 - 101276

Опубликована: Май 21, 2024

Язык: Английский

Процитировано

4

Spatial transcriptomic clocks reveal cell proximity effects in brain ageing DOI Creative Commons
Eric Sun, Olivia Y. Zhou, Max Hauptschein

и другие.

Nature, Год журнала: 2024, Номер unknown

Опубликована: Дек. 18, 2024

Old age is associated with a decline in cognitive function and an increase neurodegenerative disease risk1. Brain ageing complex accompanied by many cellular changes2. Furthermore, the influence that aged cells have on neighbouring how this contributes to tissue unknown. More generally, tools systematically address question tissues not yet been developed. Here we generate spatially resolved single-cell transcriptomics brain atlas of 4.2 million from 20 distinct ages across adult lifespan two rejuvenating interventions—exercise partial reprogramming. We build spatial clocks, machine learning models trained atlas, identify cell-type-specific transcriptomic fingerprints ageing, rejuvenation disease, including for rare cell types. Using clocks deep learning, find T cells, which increasingly infiltrate age, marked pro-ageing proximity effect cells. Surprisingly, neural stem strong pro-rejuvenating also potential mediators their neighbours. These results suggest types can potent neighbours could be targeted counter ageing. Spatial represent useful tool studying cell–cell interactions contexts should allow scalable assessment efficacy interventions disease. A map mouse at different reveals signatures effects

Язык: Английский

Процитировано

4

Sex and Region-Specific Differences in Microglial Morphology and Function Across Development DOI Creative Commons
Indra R. Bishnoi, Evan A. Bordt

Neuroglia, Год журнала: 2025, Номер 6(1), С. 2 - 2

Опубликована: Янв. 4, 2025

Microglia are exceptionally dynamic resident innate immune cells within the central nervous system, existing on a continuum of morphologies and functions throughout their lifespan. They play vital roles in response to injuries infections, clearing cellular debris, maintaining neural homeostasis development. Emerging research suggests that microglia strongly influenced by biological factors, including sex, developmental stage, local environment. This review synthesizes findings sex differences microglial morphology function key brain regions, frontal cortex, hippocampus, amygdala, hypothalamus, basal ganglia, cerebellum, across Where available, we examine how gonadal hormones influence these characteristics. Additionally, highlight limitations relying solely infer underscore need for comprehensive, multimodal approaches guide future research. Ultimately, this aims advance dialogue spatiotemporally heterogeneous implications vulnerability neurological psychiatric disorders.

Язык: Английский

Процитировано

0