Microbial ecosystems and ecological driving forces in the deepest ocean sediments DOI Creative Commons
Xiang Xiao, Weishu Zhao, Zewei Song

и другие.

Cell, Год журнала: 2025, Номер 188(5), С. 1363 - 1377.e9

Опубликована: Март 1, 2025

Systematic exploration of the hadal zone, Earth's deepest oceanic realm, has historically faced technical limitations. Here, we collected 1,648 sediment samples at 6-11 km in Mariana Trench, Yap and Philippine Basin for Trench Environment Ecology Research (MEER) project. Metagenomic 16S rRNA gene amplicon sequencing generated 92-Tbp MEER dataset, comprising 7,564 species (89.4% unreported), indicating high taxonomic novelty. Unlike reported environments, neutral drift played a minimal role, while homogeneous selection (HoS, 50.5%) dispersal limitation (DL, 43.8%) emerged as dominant ecological drivers. HoS favored streamlined genomes with key functions adaptation, e.g., aromatic compound utilization (oligotrophic adaptation) antioxidation (high-pressure adaptation). Conversely, DL promoted versatile metabolism larger genomes. These findings indicated that environmental factors drive novelty advancing our understanding mechanisms governing microbial ecosystems such an extreme environment.

Язык: Английский

Pollution control performance of solidified nickel-cobalt tailings on site: Bioavailability of heavy metals and microbial response DOI

Yuwei Xiang,

Jirong Lan, Yiqie Dong

и другие.

Journal of Hazardous Materials, Год журнала: 2024, Номер 471, С. 134295 - 134295

Опубликована: Апрель 16, 2024

Язык: Английский

Процитировано

16

Increasing pesticide diversity impairs soil microbial functions DOI Creative Commons

Bang Ni,

Lu Xiao, Da Lin

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2025, Номер 122(2)

Опубликована: Янв. 9, 2025

Pesticide application is essential for stabilizing agricultural production. However, the effects of increasing pesticide diversity on soil microbial functions remain unclear, particularly under varying nitrogen (N) fertilizer management practices. In this study, we investigated stochasticity microbes and multitrophic networks through amplicon sequencing, assessed community related to carbon (C), N, phosphorus (P), sulfur (S) cycling, characterized dominant bacterial life history strategies via metagenomics along a gradient two N addition levels. Our findings show that higher enriches abundance specialists opportunists capable degrading or resisting pesticides, reducing proportion generalists in absence addition. These shifts can complicate networks. Under increased diversity, selective pressure may drive bacteria streamline their average genome size conserve energy while enhancing C, P, S metabolic capacities, thus accelerating nutrient loss. comparison, was found reduce niche differentiation at mitigating impacts network complexity functional traits associated with ultimately alleviating results reveal contrasting different input scenarios emphasize strategic mitigate ecological use systems.

Язык: Английский

Процитировано

3

Data-Driven Approach for Designing Eco-Friendly Heterocyclic Compounds for the Soil Microbiome DOI
Bingfeng Chen,

Meng Liu,

Zhenyan Zhang

и другие.

Environmental Science & Technology, Год журнала: 2025, Номер unknown

Опубликована: Янв. 11, 2025

Soil microbiota plays crucial roles in maintaining the health, productivity, and nutrient cycling of terrestrial ecosystems. The persistence prevalence heterocyclic compounds soil pose significant risks to health. However, understanding links between microbial responses remains challenging due complexity communities their various chemical structures. This study developed a machine-learning approach that integrates properties structures with diversity bacteria functions predict impact on community improve design eco-friendly compounds. We screened key compounds─particularly those topological polar surface areas (<74.2 Å2 or 111.3–154.1 Å2), carboxyl groups, dissociation constant, which maintained high bacterial functions, revealing threshold effects where specific structural parameters dictated responses. These stabilize increase beneficial carbon nitrogen cycle functions. By applying these parameters, we quantitatively assessed eco-friendliness scores 811 compounds, providing robust foundation for guiding future applications. Our disentangles critical structure-related influence establishes computational framework designing ecological benefits from an perspective.

Язык: Английский

Процитировано

2

Revealing real impact of microalgae on seasonal dynamics of bacterial community in a pilot-scale microalgal-bacterial consortium system DOI
Peng Xie, Qiushi Wang,

Wenying Qu

и другие.

Water Research, Год журнала: 2025, Номер 274, С. 123145 - 123145

Опубликована: Янв. 14, 2025

Язык: Английский

Процитировано

2

Microplastics enhance the prevalence of antibiotic resistance genes in mariculture sediments by enriching host bacteria and promoting horizontal gene transfer DOI Creative Commons
Yifan Liu, Liuqingqing Liu, Xiao Wang

и другие.

Eco-Environment & Health, Год журнала: 2025, Номер unknown, С. 100136 - 100136

Опубликована: Янв. 1, 2025

Microplastics (MPs) and antibiotic resistance genes (ARGs) pose significant challenges to the One Health framework due their intricate multifaceted ecological environmental impacts. However, understanding of how MP properties influence ARG prevalence in mariculture sediments remains limited. Herein, polystyrene (PS) polyvinyl chloride (PVC) MPs with different sizes (20-120 μm 0.5-2.0 mm) were selected evaluate impacts underlying mechanisms driving ARGs dissemination. The results showed that PS PVC increased relative abundance by 1.41-2.50-fold 2.01-2.84-fold, respectively, compared control, particularly high-risk genes. polymer type effect was identified as more influential than size sediment resistome evolution. shifted microbial community assembly from stochastic deterministic processes, thus enriching host pathogens. Furthermore, highly hydrophobic not only recruited bacteria colonization but also facilitated exchange within plastisphere. exogenous additives released (e.g., heavy metals, bisphenol A, tridecyl ester) particles synergistically promoted conjugative transfer inducing oxidative stress enhancing cell membrane permeability. These findings revealed characteristics spread marine benthic ecosystems, underscoring importance mitigating pollution maintain ecosystem health, prevent zoonotic diseases, balance global health.

Язык: Английский

Процитировано

2

Differential impacts of water diversion and environmental factors on bacterial, archaeal, and fungal communities in the eastern route of the South-to-North water diversion project DOI Creative Commons

Moran Tang,

Qian Chen,

Xinzong Xiao

и другие.

Environment International, Год журнала: 2025, Номер 195, С. 109280 - 109280

Опубликована: Янв. 1, 2025

Water diversion projects effectively mitigate the uneven distribution of water resources but can also influence aquatic biodiversity and ecosystem functions. Despite their importance, impacts such on multi-domain microbial community dynamics underlying mechanisms remain poorly understood. Utilizing high-throughput sequencing, we investigated bacterial, archaeal, fungal along eastern route South-to-North project during both non-water period (NWDP) (WDP). Our findings revealed competitive exclusion effects among bacterial archaeal communities WDP, characterized by decreased species richness increased biomass, while biomass significantly declined. Distance-decay relationships suggested homogenization WDP. Robustness analyses reduced stability with primarily influencing stability, environmental factors had a greater impact communities. Stochastic processes, homogenizing dispersal drift, intensified for Notably, only functional diversity relative abundance chemoheterotrophic organic compound catabolic bacteria declined photoautotrophic bacteria. PLS-PM indicated that shaped assembly processes guilds, whereas This study enhances our understanding WDP underscores importance assessing direct resulting fluctuations.

Язык: Английский

Процитировано

1

Organic contamination pressure shapes spatiotemporal variability of shallow groundwater bacterial communities and temporal patterns when facing new environmental disturbances DOI
Fei Qiao, Jinguo Wang, Zhou Chen

и другие.

Journal of Hydrology, Год журнала: 2025, Номер 653, С. 132764 - 132764

Опубликована: Янв. 30, 2025

Язык: Английский

Процитировано

1

Building plumbing influences the microdiversity and community assembly of the drinking water microbiome. DOI
Huanqi He,

Linxuan Huo,

Solize Oosthuizen-Vosloo

и другие.

Water Research, Год журнала: 2025, Номер 276, С. 123244 - 123244

Опубликована: Фев. 6, 2025

Язык: Английский

Процитировано

1

Assembly, network and functional compensation of specialists and generalists in poplar rhizosphere under salt stress DOI Creative Commons

Yao Du,

Lei Zhang, Yan Yang

и другие.

npj Biofilms and Microbiomes, Год журнала: 2025, Номер 11(1)

Опубликована: Фев. 13, 2025

Язык: Английский

Процитировано

1

Heterotrophic nitrification-aerobic denitrification strains: An overlooked microbial interaction nexus in the anaerobic-swing-anoxic-oxic (ASAO) plug-flow system DOI
Runze Xu, Jiashun Cao, Song Cheng

и другие.

Journal of Environmental Management, Год журнала: 2025, Номер 380, С. 125030 - 125030

Опубликована: Март 19, 2025

Язык: Английский

Процитировано

1