Microbial ecosystems and ecological driving forces in the deepest ocean sediments DOI Creative Commons
Xiang Xiao, Weishu Zhao, Zewei Song

и другие.

Cell, Год журнала: 2025, Номер 188(5), С. 1363 - 1377.e9

Опубликована: Март 1, 2025

Systematic exploration of the hadal zone, Earth's deepest oceanic realm, has historically faced technical limitations. Here, we collected 1,648 sediment samples at 6-11 km in Mariana Trench, Yap and Philippine Basin for Trench Environment Ecology Research (MEER) project. Metagenomic 16S rRNA gene amplicon sequencing generated 92-Tbp MEER dataset, comprising 7,564 species (89.4% unreported), indicating high taxonomic novelty. Unlike reported environments, neutral drift played a minimal role, while homogeneous selection (HoS, 50.5%) dispersal limitation (DL, 43.8%) emerged as dominant ecological drivers. HoS favored streamlined genomes with key functions adaptation, e.g., aromatic compound utilization (oligotrophic adaptation) antioxidation (high-pressure adaptation). Conversely, DL promoted versatile metabolism larger genomes. These findings indicated that environmental factors drive novelty advancing our understanding mechanisms governing microbial ecosystems such an extreme environment.

Язык: Английский

Uranium contamination mediating soil and ore microbial community assembly at four mining sites, South China DOI Creative Commons
Hongyu Chen, Yizhi Sheng,

Shuaidi Wang

и другие.

Frontiers in Microbiology, Год журнала: 2025, Номер 16

Опубликована: Фев. 19, 2025

Uranium mining presents significant environmental challenges, particularly through radiological contamination affecting soil and water bodies. While microbial communities are known to be influenced by geochemical factors like pH nutrient availability, their responses severe uranium in mine tailing environments remain poorly understood. This study investigated community distributions soils ores at four sites South China explore adaptations contamination. concentrations ranged from 170 18,000 mg/kg, with the most severely contaminated samples dominated Cyanobacteria, which comprised up 49.17% of community. Proteobacteria, such as Sphingomonas, were also abundant, indicating roles radiation resistance, while Acidobacteriota Actinobacteria showed negative uranium. Addition lime neutralize acidity tailings led an increase Gemmatimonadaceae, a family commonly found under oligotrophic conditions. Multivariate statistical analyses confirmed concentration primary factor influencing composition, along values, total nitrogen, contents Fe2O3 SiO2 soils. Co-occurrence network analysis suggested that extremely high disrupted interrelationships, reflecting lived more independently adopted strategies cope intense selective pressure. Intriguingly, dispersal limitation governed 90% assembly high-uranium (>10,000 mg/kg), suggesting isolated ecological niches. Deterministic processes heterogeneous homogeneous selection only relatively moderate low levels. These findings provide insights into dynamics uranium-contaminated related bioremediation strategies.

Язык: Английский

Процитировано

0

Microbial taxa and interactions can predict lignin mineralization in soil at continental scale DOI Creative Commons
Wenjuan Yu, Wenjuan Huang, Kenneth E. Hammel

и другие.

Soil Biology and Biochemistry, Год журнала: 2025, Номер unknown, С. 109763 - 109763

Опубликована: Фев. 1, 2025

Язык: Английский

Процитировано

0

The influence of turbulence caused by hydraulic structures on the community assembly of epilithic biofilms in rivers DOI
Zhuoyin Lu, Zeng Ju, Longwei Wang

и другие.

Journal of Environmental Management, Год журнала: 2025, Номер 378, С. 124645 - 124645

Опубликована: Март 3, 2025

Язык: Английский

Процитировано

0

Microbial community succession patterns and assembly mechanisms in the white button mushroom (Agaricus bisporus) production with corn straw-based compost DOI Creative Commons

Keqing Qian,

Dong Peng,

Alip Fatul Alim

и другие.

Environmental Technology & Innovation, Год журнала: 2025, Номер unknown, С. 104135 - 104135

Опубликована: Март 1, 2025

Язык: Английский

Процитировано

0

Microbial ecosystems and ecological driving forces in the deepest ocean sediments DOI Creative Commons
Xiang Xiao, Weishu Zhao, Zewei Song

и другие.

Cell, Год журнала: 2025, Номер 188(5), С. 1363 - 1377.e9

Опубликована: Март 1, 2025

Systematic exploration of the hadal zone, Earth's deepest oceanic realm, has historically faced technical limitations. Here, we collected 1,648 sediment samples at 6-11 km in Mariana Trench, Yap and Philippine Basin for Trench Environment Ecology Research (MEER) project. Metagenomic 16S rRNA gene amplicon sequencing generated 92-Tbp MEER dataset, comprising 7,564 species (89.4% unreported), indicating high taxonomic novelty. Unlike reported environments, neutral drift played a minimal role, while homogeneous selection (HoS, 50.5%) dispersal limitation (DL, 43.8%) emerged as dominant ecological drivers. HoS favored streamlined genomes with key functions adaptation, e.g., aromatic compound utilization (oligotrophic adaptation) antioxidation (high-pressure adaptation). Conversely, DL promoted versatile metabolism larger genomes. These findings indicated that environmental factors drive novelty advancing our understanding mechanisms governing microbial ecosystems such an extreme environment.

Язык: Английский

Процитировано

0