Bioinformatics-Led Discovery of Osteoarthritis Biomarkers and Inflammatory Infiltrates DOI Creative Commons
Xinyue Hu,

Songjia Ni,

Kai Zhao

и другие.

Frontiers in Immunology, Год журнала: 2022, Номер 13

Опубликована: Июнь 6, 2022

The molecular mechanisms of osteoarthritis, the most common chronic disease, remain unexplained. This study aimed to use bioinformatic methods identify key biomarkers and immune infiltration in osteoarthritis. Gene expression profiles (GSE55235, GSE55457, GSE77298, GSE82107) were selected from Expression Omnibus database. A protein-protein interaction network was created, functional enrichment analysis genomic performed using Ontology (GO) Kyoto Encyclopedia Genes Genome (KEGG) databases. Immune cell between osteoarthritic tissues control analyzed CIBERSORT method. Identify patterns ConsensusClusterPlus package R software a consistent clustering approach. Molecular biological investigations discover important genes cartilage cells. total 105 differentially expressed identified. Differentially enriched immunological response, chemokine-mediated signaling pathway, inflammatory response revealed by GO KEGG Two distinct (ClusterA ClusterB) identified ConsensusClusterPlus. Cluster patients had significantly lower resting dendritic cells, M2 macrophages, mast activated natural killer cells regulatory T than B patients. levels TCA1, TLR7, MMP9, CXCL10, CXCL13, HLA-DRA, ADIPOQSPP1 higher IL-1β-induced group osteoarthritis an vitro qPCR experiment. Explaining differences normal will contribute understanding development

Язык: Английский

Apolipoprotein E induces pathogenic senescent-like myeloid cells in prostate cancer DOI
Nicoló Bancaro, Bianca Calì,

Martina Troiani

и другие.

Cancer Cell, Год журнала: 2023, Номер 41(3), С. 602 - 619.e11

Опубликована: Март 1, 2023

Язык: Английский

Процитировано

82

Fracture Healing in the Setting of Endocrine Diseases, Aging, and Cellular Senescence DOI Open Access
Dominik Saul, Sundeep Khosla

Endocrine Reviews, Год журнала: 2022, Номер 43(6), С. 984 - 1002

Опубликована: Фев. 19, 2022

Abstract More than 2.1 million age-related fractures occur in the United States annually, resulting an immense socioeconomic burden. Importantly, deterioration of bone structure is associated with impaired healing. Fracture healing a dynamic process which can be divided into four stages. While initial hematoma generates inflammatory environment mesenchymal stem cells and macrophages orchestrate framework for repair, angiogenesis cartilage formation mark second period. In central region, endochondral ossification favors soft callus development while next to fractured bony ends, intramembranous directly forms woven bone. The third stage characterized by removal calcification cartilage. Finally, chronic remodeling phase concludes process. Impaired fracture due aging related detrimental changes at cellular level. Macrophages, osteocytes, chondrocytes express markers senescence, leading reduced self-renewal proliferative capacity. A prolonged “inflammaging” results extended phase, senescent microenvironment deteriorating Although there evidence that setting injury, least some tissues, may play beneficial role facilitating tissue recent data demonstrate clearing enhances repair. this review, we summarize physiological as well pathological processes during endocrine disease order establish broad understanding biomechanical molecular mechanisms involved

Язык: Английский

Процитировано

80

SenNet recommendations for detecting senescent cells in different tissues DOI
Vidyani Suryadevara, Adam D. Hudgins,

Adarsh Rajesh

и другие.

Nature Reviews Molecular Cell Biology, Год журнала: 2024, Номер 25(12), С. 1001 - 1023

Опубликована: Июнь 3, 2024

Язык: Английский

Процитировано

79

Targeted clearance of p21‐ but not p16‐positive senescent cells prevents radiation‐induced osteoporosis and increased marrow adiposity DOI
Abhishek Chandra, Anthony B. Lagnado, Joshua N. Farr

и другие.

Aging Cell, Год журнала: 2022, Номер 21(5)

Опубликована: Апрель 1, 2022

Abstract Cellular senescence, which is a major cause of tissue dysfunction with aging and multiple other conditions, known to be triggered by p16 Ink4a or p21 Cip1 , but the relative contributions each pathway toward inducing senescence are unclear. Here, we directly addressed this issue first developing validating ‐ ATTAC mouse promoter driving “suicide” transgene encoding an inducible caspase‐8 which, upon induction, selectively kills ‐expressing senescent cells. Next, used established INK compare versus in cellular condition where phenotype (bone loss increased marrow adiposity) clearly driven senescence—specifically, radiation‐induced osteoporosis. Using RNA situ hybridization, confirmed reduction ‐driven transcripts following cell clearance both models. However, only +, not cells prevented osteoporosis adiposity. Reduction dysfunctional telomeres also reduced several pro‐inflammatory senescence‐associated secretory factors. Thus, comparing using two parallel genetic models, demonstrate that predominantly rather than ‐mediated senescence. Further, approach can dissect these pathways including across tissues.

Язык: Английский

Процитировано

74

Bioinformatics-Led Discovery of Osteoarthritis Biomarkers and Inflammatory Infiltrates DOI Creative Commons
Xinyue Hu,

Songjia Ni,

Kai Zhao

и другие.

Frontiers in Immunology, Год журнала: 2022, Номер 13

Опубликована: Июнь 6, 2022

The molecular mechanisms of osteoarthritis, the most common chronic disease, remain unexplained. This study aimed to use bioinformatic methods identify key biomarkers and immune infiltration in osteoarthritis. Gene expression profiles (GSE55235, GSE55457, GSE77298, GSE82107) were selected from Expression Omnibus database. A protein-protein interaction network was created, functional enrichment analysis genomic performed using Ontology (GO) Kyoto Encyclopedia Genes Genome (KEGG) databases. Immune cell between osteoarthritic tissues control analyzed CIBERSORT method. Identify patterns ConsensusClusterPlus package R software a consistent clustering approach. Molecular biological investigations discover important genes cartilage cells. total 105 differentially expressed identified. Differentially enriched immunological response, chemokine-mediated signaling pathway, inflammatory response revealed by GO KEGG Two distinct (ClusterA ClusterB) identified ConsensusClusterPlus. Cluster patients had significantly lower resting dendritic cells, M2 macrophages, mast activated natural killer cells regulatory T than B patients. levels TCA1, TLR7, MMP9, CXCL10, CXCL13, HLA-DRA, ADIPOQSPP1 higher IL-1β-induced group osteoarthritis an vitro qPCR experiment. Explaining differences normal will contribute understanding development

Язык: Английский

Процитировано

74