bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2024,
Номер
unknown
Опубликована: Дек. 22, 2024
Abstract
Understanding
the
complex
architecture
and
functions
of
neural
circuits
is
central
to
unraveling
mechanisms
multisensory
integration.
In
this
study,
we
analyzed
structural
properties
Drosophila
adult
brain
infer
community
structures
within
pathways.
We
adopt
a
network
embedding
method
developed
by
ourselves,
Bidirectional
Heterogeneous
Graph
Neural
Network
with
Random
Teleport
(BHGNN-RT),
designed
generate
vector
representations
neurons
in
directed,
heterogeneous
connectome.
This
approach
takes
advantage
both
connectivity
heterogeneity
features,
enabling
effective
clustering
revealing
hierarchical
architectures
olfactory
broader
systems.
applied
BHGNN-RT
fly
connectome
examine
connectivity-based
organization
major
neuronal
classes
along
pathways,
distinct
groups
unique
patterns
antennal
lobe,
lateral
horn,
mushroom
body,
other
regions.
Further
analysis
showed
how
different
contribute
integration
sensory
information
also
investigated
bilateral
symmetry
pathway,
shedding
light
on
signals
are
processed
ipsilateral
contralateral
connections
ensure
robust
perception.
Our
findings
demonstrate
utility
graph
representation
learning
analyzing
The
insights
gained
from
provide
deeper
understanding
comprehension
underlying
Entropy,
Год журнала:
2025,
Номер
27(3), С. 257 - 257
Опубликована: Фев. 28, 2025
Chimera
states
and
bump
are
collective
synchronization
phenomena
observed
independently
(in
different
parameter
regions)
in
networks
of
coupled
nonlinear
oscillators.
And
while
chimera
characterized
by
coexistence
coherent
incoherent
domains,
consist
alternating
active
inactive
domains.
The
idea
multistable
plasticity
the
network
connections
originates
from
brain
dynamics
where
strength
synapses
(axons)
connecting
nodes
(neurons)
may
change
dynamically
time;
when
reaching
steady
state
be
found
one
many
possible
values
depending
on
various
factors,
such
as
local
connectivity,
influence
neighboring
cells
etc.
sign
link
weights
is
also
a
significant
factor
dynamics:
positive
excitatory
negative
ones
inhibitory.
In
present
study
we
consider
simplest
case
bistable
plasticity,
has
only
two
fixed
points.
During
system/network
integration,
consequence
organizes
or
inhibitory
domains
synaptic
strengths.
We
specifically
explore
numerically
demonstrate
that
linking
may,
under
special
conditions,
give
rise
to
co-existence
bump-like
chimera-like
simultaneously
network.
co-existence,
confinement
effects
appear:
stay
localized
do
not
travel
around
Memory
reported
sense
final
spatial
arrangement
coupling
strengths
reflects
some
properties
initial
distribution.
For
quantification
system’s
temporal
features,
global
entropy
functions
employed
measures
organization,
average
firing
rates
account
for
evolution
dynamics.
particular,
minima
designate
transition
points
between
hybrid
states,
number
corresponds
addition,
deviations
signify
presence
Physical review. E,
Год журнала:
2025,
Номер
111(3)
Опубликована: Март 3, 2025
The
phenomenon
of
high-order
(p/q)
synchronization,
induced
by
two
different
frequencies
in
the
system,
is
well
known
and
studied
extensively
forced
oscillators
including
neurons
to
a
lesser
extent
coupled
oscillators.
Their
are
locked
such
that
for
every
p
cycles
one
oscillator
there
q
other.
We
demonstrate
this
pair
having
identical
but
asymmetric
coupling.
Specifically,
we
focus
on
an
excitatory-inhibitory
(E-I)
neuron
where
asymmetry
naturally
present
even
with
equal
reciprocal
synaptic
strengths
(g)
inverse
time
constant
(α).
thoroughly
investigate
coupling-induced
p/q
frequency-locking
structure
(g,α)
parameter
space
through
simulations
analysis.
Simulations
display
quasiperiodicity,
devil
staircase,
Farey
arrangement
spike
sequences,
presence
reducible
irreducible
regions.
introduce
analytical
method,
based
event-driven
maps,
determine
existence
stability
any
sequence
frequency-locked
state.
method
successfully
deals
nonsmooth
bifurcations
could
utilize
it
obtain
solutions
case
E-I
under
arbitrary
coupling
strength.
In
contrast
so-called
Arnold
tongues,
regions
obtained
here
not
structureless.
Instead
they
have
their
own
internal
bifurcation
varying
levels
complexity.
Intrasequence
intersequence
multistability,
involving
sequences
same
state,
found.
Additionally,
multistability
also
arises
overlap
p^{'}/q^{'}.
boundaries
both
defined
saddle
node
grazing
various
types.
bioRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2025,
Номер
unknown
Опубликована: Март 6, 2025
Information
flow
through
circuits
is
dictated
by
the
precise
connectivity
of
neurons
and
glia.
While
a
single
astrocyte
can
contact
many
synapses,
how
glial-synaptic
interactions
are
arranged
within
circuit
to
impact
information
remains
understudied.
Here,
we
use
local
spinal
sensorimotor
in
zebrafish
as
model
understand
astroglia
connected
vertebrate
circuit.
With
semi-automated
cellular
reconstructions
automated
approaches
map
all
synaptic
connections,
identified
connections
circuit,
from
dorsal
root
ganglia
interneurons
finally
motor
neurons.
This
revealed
complex
network
that
interact
We
then
mapped
glial
processes
tripartite
synapses
demonstrate
equally
distributed
across
supporting
idea
glia
modulate
at
different
levels.
show
multiple
astroglia,
including
bona
fide
astrocytes,
sensory
neuron's
each
these
parts
detailed
reveals
an
extensive
process
stimuli
vertebrate.
utilized
this
ultrastructural
thresholding
modulation
could
alter
circuits.
validated
with
GCaMP6s
imaging
ganglia,
astroglia.
work
provides
foundational
resource
detailing
organization
offering
insights
influence
neural
networks.
PLoS Computational Biology,
Год журнала:
2025,
Номер
21(4), С. e1012973 - e1012973
Опубликована: Апрель 22, 2025
The
modular
and
hierarchical
organization
of
the
brain
is
believed
to
support
coexistence
segregated
(specialization)
integrated
(binding)
information
processes.
A
relevant
question
yet
understand
how
such
architecture
naturally
emerges
sustained
over
time,
given
plastic
nature
brain’s
wiring.
Following
evidences
that
sensory
cortices
organize
into
assemblies
under
selective
stimuli,
it
has
been
shown
stable
neuronal
can
emerge
due
targeted
stimulation,
embedding
various
forms
synaptic
plasticity
in
presence
homeostatic
and/or
control
mechanisms.
Here,
we
show
simple
spike-timing-dependent
(STDP)
rules,
based
only
on
pre-
post-synaptic
spike
times,
also
lead
encoding
memories
absence
any
mechanism.
We
develop
a
model
spiking
neurons,
trained
by
stimuli
targeting
different
sub-populations.
satisfies
some
biologically
plausible
features:
(i)
contains
excitatory
inhibitory
neurons
with
Hebbian
anti-Hebbian
STDP;
(ii)
neither
activity
nor
weights
are
frozen
after
learning
phase.
Instead,
allowed
fire
spontaneously
while
remains
active.
find
combination
two
STDP
sub-populations
allows
for
formation
modules
network,
each
sub-population
playing
distinctive
role.
controls
firing
activity,
promote
pattern
selectivity.
After
phase,
network
settles
an
asynchronous
irregular
resting-state.
This
post-learning
associated
spontaneous
memory
recalls
which
turn
out
be
fundamental
long-term
consolidation
learned
memories.
Due
its
simplicity,
introduced
represent
test-bed
further
investigations
role
played
storing
maintenance.
Computers in Biology and Medicine,
Год журнала:
2025,
Номер
192, С. 110135 - 110135
Опубликована: Апрель 25, 2025
Analyzing
the
connectome
of
an
organism
allows
us
to
understand
how
different
areas
its
brain
communicate
with
each
other
and
structure
is
related
function.
Thanks
new
technological
advances,
increasingly
complex
organisms
has
been
reconstructed
in
recent
years.
Drosophila
melanogaster
currently
most
whose
complete
known,
both
structurally
functionally.
In
this
paper,
we
aim
contribute
study
structural
by
proposing
ad
hoc
approach
for
discovery
network
motifs
that
may
be
present
it.
Unlike
previous
approaches,
which
focused
on
parts
or
entire
very
simple
organisms,
our
operates
at
whole-brain
scale
known.
Furthermore,
while
works
have
extending
existing
motif
extraction
approaches
case,
proposes
a
concept
specifically
designed
organism.
This
find
abstracting
them
into
few
types
take
account
regions
neurons
involved
belong.
Nature Communications,
Год журнала:
2024,
Номер
15(1)
Опубликована: Дек. 2, 2024
Abstract
An
essential
role
of
glial
cells
is
to
comply
with
the
large
and
fluctuating
energy
needs
neurons.
Metabolic
adaptation
integral
acute
stress
response,
suggesting
that
could
be
major,
yet
overlooked,
targets
hormones.
Here
we
show
Dh44
neuropeptide,
Drosophila
homologue
mammalian
corticotropin-releasing
hormone
(CRH),
acts
as
an
experience-dependent
metabolic
switch
for
glycolytic
output
in
glia.
released
by
dopamine
neurons
limits
fatty
acid
synthesis
build-up
lipid
stores.
Although
basally
active,
this
hormonal
axis
acutely
stimulated
following
learning
a
danger-predictive
cue.
This
results
transient
suppression
anabolic
use
pyruvate,
sparing
it
memory-relevant
supply
Diverting
pyruvate
destination
may
dampen
need
upregulate
glycolysis
response
increased
neuronal
demand.
beneficial
efficiency
memory
formation,
mechanism
reveals
ongoing
competition
between
fuelling
anabolism.
IEEE Transactions on Visualization and Computer Graphics,
Год журнала:
2023,
Номер
30(1), С. 748 - 758
Опубликована: Окт. 26, 2023
Recent
advances
in
high-resolution
connectomics
provide
researchers
with
access
to
accurate
petascale
reconstructions
of
neuronal
circuits
and
brain
networks
for
the
first
time.
Neuroscientists
are
analyzing
these
better
understand
information
processing
brain.
In
particular,
scientists
interested
identifying
specific
small
network
motifs,
i.e.,
repeating
subgraphs
larger
that
believed
be
building
blocks.
Although
such
motifs
typically
(e.g.,
2
-
6
neurons),
vast
data
sizes
intricate
complexity
present
significant
challenges
search
analysis
process.
To
analyze
it
is
crucial
review
instances
a
motif
then
map
graph
structure
detailed
3D
involved
neurons
synapses.
We
Vimo,
an
interactive
visual
approach
chains
large
networks.
Experts
can
sketch
intuitively
interface
specify
structural
properties
synapses
query
datasets.
Motif
(MIs)
explored
renderings.
simplify
MIs,
we
designed
continuous
focus&context
metaphor
inspired
by
abstractions.
This
allows
users
transition
from
highly-detailed
rendering
anatomical
views
emphasize
underlying
synaptic
connectivity.
Furthermore,
Vimo
supports
identification
where
used
repeatedly
4
times)
form
structure.
evaluate
user
study
in-depth
case
seven
domain
experts
on
connectome
fruit
fly,
including
more
than
21,000
20
million
find
enables
hypothesis
generation
confirmation
through
fast
iterations
connectivity
highlighting.
Proceedings of the National Academy of Sciences,
Год журнала:
2024,
Номер
121(47)
Опубликована: Ноя. 14, 2024
Imaging
methods
that
span
both
functional
measures
in
living
tissue
and
anatomical
fixed
have
played
critical
roles
advancing
our
understanding
of
the
brain.
However,
making
direct
comparisons
between
different
imaging
modalities,
particularly
spanning
tissue,
has
remained
challenging.
For
example,
comparing
brain-wide
neural
dynamics
across
experiments
aligning
such
data
to
resources,
as
gene
expression
patterns
or
connectomes,
requires
precise
alignment
a
common
set
coordinates.
reaching
this
goal
is
difficult
because
registering
vivo
ex
reference
atlases
accommodating
differences
modality,
microscope
specification,
sample
preparation.
We
overcome
these
challenges