PLoS ONE,
Год журнала:
2017,
Номер
12(2), С. e0171768 - e0171768
Опубликована: Фев. 9, 2017
Previous
studies
of
symbiotic
associations
between
scleractinians
corals
and
Symbiodinium
have
demonstrated
that
the
consortium
symbionts
can
change
in
response
to
environmental
conditions.
However,
less
is
known
about
symbiont
shuffling
during
early
coral
development,
particularly
brooding
species.
This
study
examined
whether
consortia
(1)
varied
Porites
astreoides
on
shallow
(10m)
upper
mesophotic
(30m)
reefs,
(2)
changed
(3)
influenced
growth
juveniles
different
environments.
ITS2
sequences
were
amplified
using
universal
primers
analyzed
phylotype-specific
designed
for
phylotypes
A,
B,
C.
Adults
from
both
depths
found
host
only
phylotype
A
or
C
frequency
composition
did
not
vary
with
depth.
was
dominant
vertically
transmitted
planulae.
The
presence
B
detected
majority
when
transplanted
onto
reefs
whereas
reared
outdoor
aquaria.
In
addition,
juvenile
P.
harboring
combinations
reef
zones.
situ
environments
grew
faster
than
those
ex
These
results
show
development
are
by
Frontiers in Marine Science,
Год журнала:
2017,
Номер
4
Опубликована: Май 29, 2017
Coral
reefs
are
found
in
a
wide
range
of
environments,
where
they
provide
food
and
habitat
to
large
organisms
as
well
other
ecological
goods
services.
Warm-water
coral
reefs,
for
example,
occupy
shallow
sunlit,
warm
alkaline
waters
order
grow
calcify
at
the
high
rates
necessary
build
maintain
their
calcium
carbonate
structures.
At
deeper
locations
(40
–
150
m),
"mesophotic"
(low
light)
accumulate
much
lower
(if
all
some
cases)
yet
remain
important
organisms,
including
those
fisheries.
Finally,
even
deeper,
down
2000
m
or
more,
so-called
'cold-water'
dark
depths.
Despite
importance,
facing
significant
challenges
from
human
activities
pollution,
over-harvesting,
physical
destruction,
climate
change.
In
latter
case,
greenhouse
gas
emission
scenarios
(such
Representative
Concentration
Pathway
RCP
4.5)
likely
drive
elimination
most
warm-water
by
2040-2050.
Cold-water
corals
also
threatened
warming
temperatures
ocean
acidification
although
evidence
direct
effect
change
is
less
clear.
Evidence
that
can
adapt
which
sufficient
them
keep
up
with
rapid
minimal,
especially
given
long-lived
hence
have
slow
evolution.
Conclusions
will
migrate
higher
latitudes
equally
unfounded,
observations
tropical
species
appearing
'necessary
but
not
sufficient'
entire
reef
ecosystems
shifting.
On
contrary,
degrade
rapidly
over
next
20
years,
presenting
fundamental
500
million
people
who
derive
food,
income,
coastal
protection,
services
reefs.
Unless
advances
goals
Paris
Climate
Change
Agreement
occur
decade,
hundreds
millions
face
increasing
amounts
poverty
social
disruption,
and,
cases,
regional
insecurity.
PLoS ONE,
Год журнала:
2015,
Номер
10(1), С. e0116182 - e0116182
Опубликована: Янв. 30, 2015
Stable
isotopes
of
carbon,
nitrogen,
and
sulfur
are
used
as
ecological
tracers
for
a
variety
applications,
such
studies
animal
migrations,
energy
sources,
food
web
pathways.
Yet
uncertainty
relating
to
the
time
period
integrated
by
isotopic
measurement
tissues
can
confound
interpretation
data.
There
have
been
large
number
experimental
diet
shift
aimed
at
quantifying
tissue
turnover
rate
λ
(%·day-1,
often
expressed
half-life,
ln(2)/λ,
days).
no
evaluated
or
summarized
many
individual
half-life
estimates
in
an
effort
both
seek
broad-scale
patterns
characterize
degree
variability.
Here,
we
collect
previously
published
estimates,
examine
how
is
related
body
size,
test
tissue-
taxa-varying
allometric
relationships.
Half-life
generally
increases
with
mass,
longer
muscle
blood
compared
plasma
internal
organs.
was
longest
ecotherms,
followed
mammals,
finally
birds.
For
ectotherms,
different
taxa-tissue
combinations
had
similar
slopes
that
matched
predictions
metabolic
theory.
ectotherms
be
approximated
as:
ln
(half-life)
=
0.22*ln
(body
mass)
+
group-specific
intercept;
n
261,
p<0.0001,
r2
0.63.
endothermic
groups,
relationships
mass
were
weak
model
intercepts
heterogeneous.
While
using
simple
some
taxa
types,
there
also
high
unexplained
variation
our
models.
Our
study
highlights
several
strong
general
patterns,
though
accurate
prediction
from
readily
available
variables
remains
elusive.
Deep
coral
reefs
(that
is,
mesophotic
ecosystems)
can
act
as
refuges
against
major
disturbances
affecting
shallow
reefs.
It
has
been
proposed
that,
through
the
provision
of
propagules,
such
deep
may
aid
in
reef
recovery;
however,
this
"reseeding"
hypothesis
remains
largely
untested.
We
conducted
a
genome-wide
assessment
two
scleractinian
species
with
contrasting
reproductive
modes,
to
assess
potential
for
connectivity
between
(40
m)
and
(12
depths
on
an
isolated
system
Western
Atlantic
(Bermuda).
To
overcome
pervasive
issue
endosymbiont
contamination
associated
de
novo
sequencing
corals,
we
used
novel
subtraction
reference
approach.
have
demonstrated
that
strong
depth-associated
selection
led
divergence
brooding
Agaricia
fragilis
(with
by
depth
exceeding
location).
Despite
introgression
from
into
populations,
lack
first-generation
migrants
indicates
effective
over
ecological
time
scales
is
extremely
limited
thus
precludes
reseeding
refuges.
In
contrast,
no
genetic
structuring
(or
locations)
was
observed
broadcasting
Stephanocoenia
intersepta,
indicating
substantial
vertical
connectivity.
Our
findings
demonstrate
within
same
differ
greatly
Bermuda
apply
only
small
number
species.
Overall,
argue
"deep
refuge
hypothesis"
holds
individual
during
episodic
but
should
not
be
assumed
broader
ecosystem-wide
phenomenon.
Frontiers in Marine Science,
Год журнала:
2018,
Номер
5
Опубликована: Фев. 2, 2018
Global
climate
change
and
localised
anthropogenic
stressors
are
driving
rapid
declines
in
coral
reef
health.
In
vitro
experiments
have
been
fundamental
providing
insight
into
how
organisms
will
potentially
respond
to
future
climates.
However,
such
inevitably
limited
their
ability
reproduce
the
complex
interactions
that
govern
systems.
Studies
examining
communities
already
persist
under
naturally-occurring
extreme
marginal
physicochemical
conditions
therefore
become
increasingly
popular
advance
ecosystem
scale
predictions
of
form
function,
although
no
single
site
provides
a
perfect
analogue
reefs.
Here
we
review
current
state
knowledge
exists
on
distribution
corals
environments,
geographic
sites
at
latitudinal
extremes
growth,
as
well
variety
shallow
systems
reef-neighbouring
environments
(including
upwelling
CO2
vent
sites).
We
also
conduct
synthesis
abiotic
data
collected
these
systems,
provide
first
collective
assessment
range
which
currently
persist.
use
increase
our
understanding
biological
ecological
mechanisms
facilitate
survival
success
sub-optimal
conditions.
This
comprehensive
can
begin
to:
(i)
highlight
extent
scenarios
persist,
(ii)
explore
whether
there
commonalities
taxa
able
extremes,
(iii)
evidence
for
key
required
support
and/or
persistence
environmental
conditions,
iv)
evaluate
potential
act
refugia
changing
Such
approach
is
critical
better
understand
environment.
finally
outline
priority
areas
research
discuss
additional
management
options
they
may
through
refuge
or
by
genetic
stocks
stress
tolerant
proactive
strategies.
ABSTRACT
For
ecosystems
vulnerable
to
environmental
change,
understanding
the
spatiotemporal
stability
of
functionally
crucial
symbioses
is
fundamental
determining
mechanisms
by
which
these
may
persist.
The
coral
Pachyseris
speciosa
a
successful
generalist
that
succeeds
in
diverse
reef
habitats.
nature
this
suggests
it
have
capacity
form
significant
microbial
partnerships
facilitate
access
range
nutritional
sources
within
different
Here,
we
propose
metaorganism
hosting
three
distinct
interactions:
ubiquitous
core
microbiome
very
few
symbiotic
host-selected
bacteria,
spatially
and/or
regionally
explicit
microbes
filling
functional
niches
(<100
phylotypes),
and
highly
variable
bacterial
community
responsive
biotic
abiotic
processes
across
spatial
temporal
scales
(>100,000
phylotypes).
We
find
hosts
upwards
170,000
phylotypes
provide
evidence
for
persistence
select
group
bacteria
corals
habitats
Great
Barrier
Reef
Coral
Sea.
further
show
higher
number
are
consistently
associated
with
on
mesophotic
reefs
than
shallow
reefs.
An
increase
diversity
depth
reliance
nutrient
acquisition
exposed
upwelling.
Understanding
complex
communities
host
organisms
broad
environments
as
microbiomes
can
insight
into
those
interactions
niche
competitive
advantage
hosts’
environment.
IMPORTANCE
Corals
been
proposed
most
biosphere.
high
variability
has
hampered
identification
playing
key
roles
contribute
survival.
Exploring
distribution,
found
present
all
(60
80
m).
These
results
consistent
coral-bacterial
support
consideration
metaorganisms
microbiomes:
microbiome,
niches,
community.
We
propose
that
the
coral
holobiont
should
be
conceptualized
as
a
diverse
transient
microbial
community
is
responsive
to
surrounding
environment
and
encompasses
simple,
redundant,
resident
microbiome
small
conserved
core
microbiome.
Most
importantly,
we
show
comparable
microbiomes
of
other
organisms
studied
thus
far.
Accurately
characterizing
coral-microbe
interactions
provides
an
important
baseline
from
which
functional
roles
niches
within
microbes
reside
can
deciphered.
PeerJ,
Год журнала:
2016,
Номер
4, С. e2475 - e2475
Опубликована: Окт. 4, 2016
Although
the
existence
of
coral-reef
habitats
at
depths
to
165
m
in
tropical
regions
has
been
known
for
decades,
richness,
diversity,
and
ecological
importance
mesophotic
coral
ecosystems
(MCEs)
only
recently
become
widely
acknowledged.
During
an
interdisciplinary
effort
spanning
more
than
two
we
characterized
most
expansive
MCEs
ever
recorded,
with
vast
macroalgal
communities
areas
100%
cover
between
50-90
extending
tens
km2
Hawaiian
Archipelago.
We
used
a
variety
sensors
techniques
establish
geophysical
characteristics.
Biodiversity
patterns
were
established
from
visual
video
observations
collected
specimens
obtained
submersible,
remotely
operated
vehicles
mixed-gas
SCUBA
rebreather
dives.
Population
dynamics
based
on
age,
growth
fecundity
estimates
selected
fish
species
laser-videogrammetry,
specimens,
otolith
preparations.
Trophic
determined
using
carbon
nitrogen
stable
isotopic
analyses
750
reef
fishes.
are
associated
clear
water
suitable
substrate.
In
comparison
shallow
reefs
Archipelago,
inhabitants
have
lower
total
harbor
new
unique
species,
higher
rates
endemism
Fish
present
similar
population
trophic
(except
benthic
invertivores)
structures
high
genetic
connectivity
depths.
Hawai'i
widespread
but
specific
High
genetic,
potential
serve
as
refugia
some
our
results
question
premise
that
resilient
reefs.
found
within
increases
depth,
do
not
support
suggestions
global
faunal
break
60
m.
Our
findings
enhance
scientific
foundations
conservation
management
MCEs,
provide
template
future
research
worldwide.
Molecular Ecology,
Год журнала:
2018,
Номер
27(14), С. 2956 - 2971
Опубликована: Июнь 14, 2018
Abstract
Spatially
adjacent
habitats
on
coral
reefs
can
represent
highly
distinct
environments,
often
harbouring
different
communities.
Yet,
certain
species
thrive
across
divergent
environments.
It
is
unknown
whether
the
forces
of
selection
are
sufficiently
strong
to
overcome
counteracting
effects
typically
high
gene
flow
over
short
distances,
and
for
local
adaptation
occur.
We
screened
genome
(using
restriction
site‐associated
sequencing)
characterized
both
dinoflagellate
photosymbiont‐
tissue‐associated
prokaryote
microbiomes
metabarcoding)
a
reef
flat
slope
population
reef‐building
coral,
Pocillopora
damicornis
,
at
two
locations
Heron
Island
in
southern
Great
Barrier
Reef.
Reef
populations
were
separated
by
<100
m
horizontally
~5
vertically,
study
~1
km.
For
host,
genetic
divergence
between
was
much
greater
than
locations,
suggesting
limited
populations.
Consistent
with
environmental
selection,
outlier
loci
primarily
belonged
conserved,
minimal
cellular
stress
response,
likely
reflecting
temperature
irradiance
regimes
slope.
The
community
differed
habitat
and,
lesser
extent,
location,
whereas
photosymbionts
but
not
location.
observed
intraspecific
diversity
associated
supports
that
involves
multiple
members
holobiont.
Adaptive
alleles
or
microbial
associations
present
from
environmentally
variable
may
provide
source
adaptive
variation
assisted
evolution
approaches,
through
flow,
artificial
cross‐breeding
probiotic
inoculations,
aim
increase
climate
resilience