Multidisciplinary approaches for enzyme biocatalysis in pharmaceuticals: protein engineering, computational biology, and nanoarchitectonics DOI Creative Commons
Suhyeon Kim,

Seongmin Ga,

Hayeon Bae

и другие.

EES Catalysis, Год журнала: 2023, Номер 2(1), С. 14 - 48

Опубликована: Окт. 28, 2023

This article reviews the integration of multidisciplinary approaches, including protein engineering, computational biology, and nanoarchitectonics, to advance pharmaceutical enzyme biocatalysis.

Язык: Английский

Precision enzyme discovery through targeted mining of metagenomic data DOI Creative Commons
Shohreh Ariaeenejad, Javad Gharechahi, Mehdi Foroozandeh Shahraki

и другие.

Natural Products and Bioprospecting, Год журнала: 2024, Номер 14(1)

Опубликована: Янв. 11, 2024

Abstract Metagenomics has opened new avenues for exploring the genetic potential of uncultured microorganisms, which may serve as promising sources enzymes and natural products industrial applications. Identifying with improved catalytic properties from vast amount available metagenomic data poses a significant challenge that demands development novel computational functional screening tools. The all are primarily dictated by their structures, predominantly determined amino acid sequences. However, this aspect not been fully considered in enzyme bioprospecting processes. With accumulating number sequences increasing demand discovering biocatalysts, structural modeling can be employed to identify properties. Recent efforts discover polysaccharide-degrading rumen metagenome using homology-based searches machine learning-based models have shown promise. Here, we will explore various approaches screen shortlist metagenome-derived biocatalyst candidates, conjunction wet lab analytical methods traditionally used characterization.

Язык: Английский

Процитировано

15

Extremozymes: Challenges and opportunities on the road to novel enzymes production DOI

Diego I.J. Salas-Bruggink,

Jorge Sánchez-San Martín,

Gabriel Leiva

и другие.

Process Biochemistry, Год журнала: 2024, Номер 143, С. 323 - 336

Опубликована: Май 3, 2024

Язык: Английский

Процитировано

9

Tools for computational design and high-throughput screening of therapeutic enzymes DOI
Michal Vasina, Jan Velecký, Joan Planas-Iglesias

и другие.

Advanced Drug Delivery Reviews, Год журнала: 2022, Номер 183, С. 114143 - 114143

Опубликована: Фев. 12, 2022

Язык: Английский

Процитировано

35

Recent advances in applying cell-free systems for high-value and complex natural product biosynthesis DOI

Xiangyang Ji,

Wan‐Qiu Liu, Jian Li

и другие.

Current Opinion in Microbiology, Год журнала: 2022, Номер 67, С. 102142 - 102142

Опубликована: Март 5, 2022

Язык: Английский

Процитировано

35

Biodegradation of plastics: mining of plastic-degrading microorganisms and enzymes using metagenomics approaches DOI
Dae‐Wi Kim, Jae-Hyung Ahn, Chang‐Jun Cha

и другие.

The Journal of Microbiology, Год журнала: 2022, Номер 60(10), С. 969 - 976

Опубликована: Сен. 27, 2022

Язык: Английский

Процитировано

34

Functional metagenomic screening identifies an unexpected β-glucuronidase DOI
Stefanie Neun, P. Brear, E.C. Campbell

и другие.

Nature Chemical Biology, Год журнала: 2022, Номер 18(10), С. 1096 - 1103

Опубликована: Июль 7, 2022

Язык: Английский

Процитировано

30

Epoxide Hydrolases: Multipotential Biocatalysts DOI Open Access
Marek Bučko, Katarína Kaniaková, Helena Hronská

и другие.

International Journal of Molecular Sciences, Год журнала: 2023, Номер 24(8), С. 7334 - 7334

Опубликована: Апрель 15, 2023

Epoxide hydrolases are attractive and industrially important biocatalysts. They can catalyze the enantioselective hydrolysis of epoxides to corresponding diols as chiral building blocks for bioactive compounds drugs. In this review article, we discuss state art development potential epoxide biocatalysts based on most recent approaches techniques. The covers new discover using genome mining enzyme metagenomics, well improving activity, enantioselectivity, enantioconvergence, thermostability by directed evolution a rational design. Further improvements in operational storage stabilization, reusability, pH thermal stabilization immobilization techniques discussed study. New possibilities expanding synthetic capabilities their involvement non-natural cascade reactions described.

Язык: Английский

Процитировано

21

Machine Learning: A Suitable Method for Biocatalysis DOI Open Access
Pedro Sampaio, Pedro Fernandes

Catalysts, Год журнала: 2023, Номер 13(6), С. 961 - 961

Опубликована: Июнь 1, 2023

Biocatalysis is currently a workhorse used to produce wide array of compounds, from bulk fine chemicals, in green and sustainable manner. The success biocatalysis largely thanks an enlargement the feasible chemical reaction toolbox. This materialized due major advances enzyme screening tools methods, together with high-throughput laboratory techniques for biocatalyst optimization through engineering. Therefore, enzyme-related knowledge has significantly increased. To handle large number data now available, computational approaches have been gaining relevance biocatalysis, among them machine learning methods (MLMs). MLMs use algorithms learn improve experience automatically. review intends briefly highlight contribution within biochemical engineering bioprocesses present key aspects scope related fields, mostly readers non-skilled mind. Accordingly, brief overview basic concepts underlying are presented. complemented steps build model followed by insights into types intelligently analyse data, identify patterns develop realistic applications bioprocesses. Notwithstanding, given this review, some recent illustrative examples protein engineering, production, formulation provided, future developments suggested. Overall, it envisaged that will provide how these assets more efficient biocatalysis.

Язык: Английский

Процитировано

17

Enzymatic processing of algae for food applications DOI Creative Commons
Ali Parsaeimehr, Gulnihal Ozbay

Biocatalysis and Agricultural Biotechnology, Год журнала: 2024, Номер 56, С. 103042 - 103042

Опубликована: Янв. 26, 2024

Today, almost all human health problems are related to malnutrition. Algae (macro- and micro-algae) potent provide the necessary nutrients for our bodies (i.e., starch, lipids, protein, dietary fiber, minerals, vitamins). Nevertheless, there limitations due extraction efficiency, size, compatibility, hydrocolloid nature of some algal compounds interest food industry. As a result, enzyme-assisted biomass under optimal conditions will be safer more sustainable approach than using hazardous organic solvents. Also, enzymes can used modify molecular structures introduce new biomolecules that exhibit higher stability industries. Throughout this review, we explore most recent research on process use as food.

Язык: Английский

Процитировано

6

Mining strategies for isolating plastic-degrading microorganisms DOI
Ziyao Zhang, Qi Zhang,

Huihui Yang

и другие.

Environmental Pollution, Год журнала: 2024, Номер 346, С. 123572 - 123572

Опубликована: Фев. 16, 2024

Язык: Английский

Процитировано

6