Exploring Algal Metabolism: Insights from Metabolomics and Computational Approaches DOI Creative Commons
María Carpena, Aurora Silva, Franklin Chamorro

и другие.

Опубликована: Ноя. 4, 2024

Algae, despite being labeled as an underexplored biological source of chemical constituents, remain inadequately studied in terms their metabolism. Metabolomics has emerged a high-throughput technology to investigate the full metabolic profile samples that could aid understanding and characterization algae. By delving into primary composition, particularly polysaccharides phycobiliproteins, alongside secondary metabolites like polyphenols pigments, researchers can uncover not only rheological nutritional properties but also diverse activities. Given growing interest algae food related industries, innovative approaches should be explored enhance value functional components. In this sense, context contemporary in-silico studies, metabolomics paired with computational methodologies, develop novel techniques for studying biomolecular interactions. Molecular docking emerged, function predicting atomic-level interaction between small molecules (ligands) target proteins (proteins). This synergistic approach integrating both technologies allow us characterize algal profiles, evaluate potential bioactive properties, better understand work explores development metabolomic strategies targeted toward harnessing these technologies, we unlock new possibilities using various industrial applications, paving way sustainable solutions future.

Язык: Английский

New approaches to secondary metabolite discovery from anaerobic gut microbes DOI Creative Commons

Lazarina V. Butkovich,

Oliver B. Vining,

Michelle O’Malley

и другие.

Applied Microbiology and Biotechnology, Год журнала: 2025, Номер 109(1)

Опубликована: Янв. 20, 2025

Язык: Английский

Процитировано

0

A review of advances in in vitro RNA preparation by ssRNAP DOI

Yuan Shen,

Dong-Qi Yang,

Yuan Liu

и другие.

International Journal of Biological Macromolecules, Год журнала: 2025, Номер 304, С. 141002 - 141002

Опубликована: Фев. 12, 2025

Язык: Английский

Процитировано

0

Recent Advancement of NMR in Drug Discovery Systems DOI
Devesh Chandra, Nitisha Sendri

Advances in chemical and materials engineering book series, Год журнала: 2025, Номер unknown, С. 151 - 170

Опубликована: Фев. 14, 2025

Metabolomic analysis presents a major challenge in achieving unambiguous characterization of metabolites detected samples. Among the various techniques used metabolomics, Nuclear Magnetic Resonance (NMR) spectroscopy stands out for its ability to provide detailed structural information. When integrated with other spectroscopic data, this information facilitates elucidation complex NMR spectroscopy, which is highly sophisticated and powerful tool pharmaceutical research, playing crucial part drug discovery. The advent heteronuclear has particularly revolutionized field discovery development. This chapter addresses practical aspects acquiring standard one-dimensional (1D) spectra introduces methods distinguishing known undescribed molecules rapidly. Furthermore, it delves into two-dimensional (2D) sequences, such as 1H-13C, illustrates how these combined can be determine structures natural products.

Язык: Английский

Процитировано

0

Advances in chemoselective probes for liquid chromatography-mass spectrometry analysis of small-molecular-weight compounds DOI Creative Commons
Xinze Wu, Hua‐Ming Xiao, Na An

и другие.

Journal of Chromatography Open, Год журнала: 2024, Номер 6, С. 100154 - 100154

Опубликована: Июль 17, 2024

The chemoselective probe technique combines the benefits of chemical derivatization and solid-phase extraction, allowing for simultaneous enhancement analyte ionization efficiency, reduction matrix interference, improvement in chromatographic separation. This innovative holds great promise applications metabolomics research, metabolic tracking, natural product isolation purification. review provides a comprehensive overview advancements probes from 2007 to 2024, focusing on progress design, particularly cleavable linkers. Additionally, it discusses application LC-MS analysis small-molecular-weight compounds.

Язык: Английский

Процитировано

2

Marine Specialized Metabolites : Unveiling Nature's Chemical Treasures from the Deep Blue DOI Creative Commons
Thilina U. Jayawardena,

Natacha Mérindol,

Nuwan Sameera Liyanage

и другие.

TrAC Trends in Analytical Chemistry, Год журнала: 2024, Номер unknown, С. 118097 - 118097

Опубликована: Дек. 1, 2024

Язык: Английский

Процитировано

2

New drug discovery and development from natural products: Advances and strategies DOI
Yixin Wang,

Fan Wang,

Wenxiu Liu

и другие.

Pharmacology & Therapeutics, Год журнала: 2024, Номер 264, С. 108752 - 108752

Опубликована: Ноя. 16, 2024

Язык: Английский

Процитировано

2

Chemical tools for unpicking plant specialised metabolic pathways DOI Creative Commons

Benedikt Seligmann,

Shenyu Liu, Jakob Franke

и другие.

Current Opinion in Plant Biology, Год журнала: 2024, Номер 80, С. 102554 - 102554

Опубликована: Май 30, 2024

Elucidating the biochemical pathways of specialised metabolites in plants is key to enable or improve their sustainable biotechnological production. Chemical tools can greatly facilitate discovery biosynthetic genes and enzymes. Here, we summarise transdisciplinary approaches where methods from chemistry chemical biology helped overcome challenges pathway elucidation. Based on recent examples, describe how state-of-the-art isotope labelling experiments guide selection gene candidates, affinity-based probes identification novel enzymes, semisynthesis availability elusive intermediates, biomimetic reactions provide a better understanding inherent reactivity. We anticipate that wider application such will accelerate pace elucidation plants.

Язык: Английский

Процитировано

1

Metabolomics‐driven approaches for identifying therapeutic targets in drug discovery DOI Creative Commons

Sophearith Pan,

Lichang Yin, Jie Liu

и другие.

MedComm, Год журнала: 2024, Номер 5(11)

Опубликована: Ноя. 1, 2024

Abstract Identification of therapeutic targets can directly elucidate the mechanism and effect drug therapy, which is a central step in development. The disconnect between protein phenotypes under complex mechanisms hampers comprehensive target understanding. Metabolomics, as systems biology tool that captures phenotypic changes induced by exogenous compounds, has emerged valuable approach for identification. A overview was provided this review to illustrate principles advantages metabolomics, delving into application metabolomics This outlines various metabolomics‐based methods, such dose–response stable isotope‐resolved multiomics, identify key enzymes metabolic pathways affected substances through dose‐dependent metabolite–drug interactions. Emerging techniques, including single‐cell artificial intelligence, mass spectrometry imaging, are also explored their potential enhance discovery. emphasizes metabolomics' critical role advancing our understanding disease accelerating targeted development, while acknowledging current challenges field.

Язык: Английский

Процитировано

1

Evaluation of extraction solvents for untargeted metabolomics to decipher the dissolved organic matter of Antarctic cryoconite holes DOI Open Access
Swapnil Ashok Mundhe,

Saborni Maiti,

Aritri Sanyal

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Апрель 30, 2024

Abstract Cryoconite holes are biological hotspots with a high biogeochemical turnover rate, contributing significantly to the glacial ecosystem’s overall carbon cycles and net fluxes. Unfortunately, information about composition of low molecular weight molecules formed through metabolic processes cryoconite-dwelling microbes is scanty. These constitute substantial portion dissolved organic matter (DOM) within cryoconite holes. The present study investigated DOM in using reverse-phase liquid chromatography (RP-LC) coupled high-resolution tandem mass spectrometry. We evaluated various solvent combinations water, methanol, acetonitrile extract chemically diverse polar non-polar metabolites from Among single solvents, organic-rich MeOH: Water (70:30 v/v) parallel 2-single Acetonitrile: Methanol: (40:40:20 provided increased number chemical diversity extracted metabolites. Combining RP hydrophilic interaction (HILIC) technique highest unique This dual-LC ionization polarity combination detection features by 46.96% 24.52% single- two-solvent compared alone. developed simple untargeted metabolomics workflow that highly sensitive robust, detecting potentially identifying large (extracellular) (intracellular) environment. method can better characterize DOM’s and, after integrating other ‘omics’ approaches, be used examine link between pathways microbial communities global or similar ecosystems, revealing how these earthy systems their flora control nutrient storage release response climate change. Overall, presents valuable methodology for studying biogeochemistry

Язык: Английский

Процитировано

0

Harnessing Natural Inhibitors of Protein Synthesis for Cancer Therapy: A Comprehensive Review DOI Creative Commons
Liqin Liu, Zhihui Li, Wenshuang Wu

и другие.

Pharmacological Research, Год журнала: 2024, Номер 209, С. 107449 - 107449

Опубликована: Окт. 4, 2024

Cancer treatment remains a formidable challenge in modern medicine, necessitating nuanced understanding of its molecular underpinnings and the identification novel therapeutic modalities. Among intricate web cellular pathways implicated oncogenesis, protein synthesis has emerged as fundamental process warranting meticulous investigation. This review elucidates multifaceted role tumor initiation progression, highlighting potential targeting key nodes within these viable strategies. Natural products have long served source bioactive compounds with owing to their structural diversity evolutionary honing. Within this framework, we provide thorough examination natural inhibitors promising candidates for cancer therapy, drawing upon recent advancements mechanistic insights. By synthesizing current evidence elucidating challenges opportunities, aims galvanize further research into development product-based anticancer therapeutics, thereby advancing clinical armamentarium against malignancies.

Язык: Английский

Процитировано

0