Deciphering driving forces of biomolecular phase separation from simulations DOI Creative Commons
Lars V. Schäfer, Lukas S. Stelzl

Current Opinion in Structural Biology, Год журнала: 2025, Номер 92, С. 103026 - 103026

Опубликована: Март 8, 2025

The formation and modulation of biomolecular condensates as well their structural dynamic properties are determined by an intricate interplay different driving forces, which down at the microscopic scale involve molecular interactions biological macromolecules surrounding solvent ions. Molecular simulations increasingly used to provide detailed insights into various processes thermodynamic forces play, thereby yielding mechanistic understanding aiding interpretation experiments level individual amino acid residues or even atoms. Here we summarize recent advances in field biocondensate with a focus on coarse-grained all-atom dynamics (MD) simulations. We highlight possible future challenges concerning computationally efficient physically accurate large complex systems.

Язык: Английский

Machine learning methods to study sequence–ensemble–function relationships in disordered proteins DOI Creative Commons
Sören von Bülow, Giulio Tesei, Kresten Lindorff‐Larsen

и другие.

Current Opinion in Structural Biology, Год журнала: 2025, Номер 92, С. 103028 - 103028

Опубликована: Март 12, 2025

Язык: Английский

Процитировано

1

Deciphering driving forces of biomolecular phase separation from simulations DOI Creative Commons
Lars V. Schäfer, Lukas S. Stelzl

Current Opinion in Structural Biology, Год журнала: 2025, Номер 92, С. 103026 - 103026

Опубликована: Март 8, 2025

The formation and modulation of biomolecular condensates as well their structural dynamic properties are determined by an intricate interplay different driving forces, which down at the microscopic scale involve molecular interactions biological macromolecules surrounding solvent ions. Molecular simulations increasingly used to provide detailed insights into various processes thermodynamic forces play, thereby yielding mechanistic understanding aiding interpretation experiments level individual amino acid residues or even atoms. Here we summarize recent advances in field biocondensate with a focus on coarse-grained all-atom dynamics (MD) simulations. We highlight possible future challenges concerning computationally efficient physically accurate large complex systems.

Язык: Английский

Процитировано

0