medRxiv (Cold Spring Harbor Laboratory),
Год журнала:
2023,
Номер
unknown
Опубликована: Фев. 24, 2023
Summary
Hidden
confounding
biases
hinder
identifying
causal
protein
biomarkers
for
Alzheimer’s
disease
in
non-randomized
studies.
While
Mendelian
randomization
(MR)
can
mitigate
these
using
quantitative
trait
loci
(pQTLs)
as
instrumental
variables,
some
pQTLs
violate
core
assumptions,
leading
to
biased
conclusions.
To
address
this,
we
propose
MR-SPI,
a
novel
MR
method
that
selects
valid
pQTL
instruments
the
Anna
Karenina
Principle
and
performs
robust
post-selection
inference.
Integrating
MR-SPI
with
AlphaFold3,
developed
computational
pipeline
identify
predict
3D
structural
changes.
Applied
genome-wide
proteomics
data
from
54,306
UK
Biobank
participants
455,258
subjects
(71,880
cases
383,378
controls)
association
study
of
disease,
identified
seven
proteins
(TREM2,
PILRB,
PILRA,
EPHA1,
CD33,
RET,
CD55)
alterations
due
missense
mutations.
These
findings
offer
insights
into
etiology
potential
drug
targets
disease.
Acta Neuropathologica Communications,
Год журнала:
2024,
Номер
12(1)
Опубликована: Май 7, 2024
Neuroinflammation
and
Alzheimer's
disease
(AD)
co-pathology
may
contribute
to
progression
severity
in
dementia
with
Lewy
bodies
(DLB).
This
study
aims
clarify
whether
a
different
pattern
of
neuroinflammation,
such
as
alteration
microglial
astroglial
morphology
distribution,
is
present
DLB
cases
without
AD
co-pathology.
The
load
(%
area
immunopositivity)
total
(Iba1)
reactive
microglia
(CD68
HLA-DR),
astrocytes
(GFAP)
proteinopathies
alpha-synuclein
(KM51/pser129),
amyloid-beta
(6
F/3D)
p-tau
(AT8)
were
assessed
cohort
mixed
+
(n
=
35),
pure
15),
16)
control
11)
donors
limbic
neocortical
brain
regions
using
immunostaining,
quantitative
image
analysis
confocal
microscopy.
Regional
group
differences
estimated
linear
model
analysis.
Morphologically,
amoeboid
common
AD,
while
homeostatic
small
soma
thin
processes
observed
cases.
A
higher
density
swollen
was
cases,
but
not
or
Mixed
had
CD68-loads
the
amygdala
parahippocampal
gyrus
than
did
differ
astrocytic
loads.
Pure
showed
Iba1-loads
CA1
CA2,
CA2
subiculum,
CA1-4
subiculum
In
associated
strongly
(Iba1,
CD68
minimally
(CD68).
addition,
highest
activity
found
CA4.
Confocal
microscopy
demonstrated
co-localization
large
neuritic
classic-cored
plaques
conclusion,
activation
largely
co-pathology,
response
not.
high
regions,
prevalent
pathology.
Our
provides
novel
insights
into
molecular
neuropathology
DLB,
highlighting
importance
AD.
Alzheimer s & Dementia,
Год журнала:
2025,
Номер
unknown
Опубликована: Янв. 27, 2025
Abstract
This
proceedings
article
summarizes
the
inaugural
“T
Cells
in
Brain”
symposium
held
at
Columbia
University.
Experts
gathered
to
explore
role
of
T
cells
neurodegenerative
diseases.
Key
topics
included
characterization
antigen‐specific
immune
responses,
cell
receptor
(TCR)
repertoire,
microbial
etiology
Alzheimer's
disease
(AD),
and
microglia–T
crosstalk,
with
a
focus
on
how
affect
neuroinflammation
AD
biomarkers
like
amyloid
beta
tau.
The
also
examined
immunotherapies
for
AD,
including
Valacyclovir
Treatment
Disease
(VALAD)
trial,
two
clinical
trials
leveraging
regulatory
approaches
multiple
sclerosis
amyotrophic
lateral
therapy.
Additionally,
single‐cell
RNA/TCR
sequencing
other
provided
insights
into
dynamics
highlights
key
findings
from
outlines
future
research
directions
further
understand
neurodegeneration,
offering
innovative
therapeutic
Highlights
Researchers
discuss
study
brain
disorders.
New
technologies
allow
high‐throughput
screening
cells.
Microbial
infections
can
precede
several
serious
chronic
neurological
Central
peripheral
responses
shape
pathology.
Immunotherapy
induce
neuroinflammatory
Alzheimer's
disease
(AD)
presents
a
significant
public
health
problem
and
major
cause
of
dementia.
Not
only
genetic
but
epigenetic
factors
contribute
to
complex
heterogeneous
molecular
mechanisms
underlying
AD
risk;
in
particular,
single
nucleotide
polymorphisms
(SNPs)
DNA
methylation
can
lead
dysregulation
gene
expression
the
brain.
Each
these
regulators
has
been
independently
studied
well
progression,
however,
their
interactive
roles,
particularly
when
they
are
located
differently,
still
remains
unclear.
Here,
we
aimed
explore
interplay
between
SNPs
regulating
transcript
levels
brain
through
an
integrative
analysis
whole-genome
sequencing,
RNA-seq,
data
measured
from
dorsolateral
prefrontal
cortex.
We
identified
179
SNP-methylation
combination
pairs
that
showed
statistically
interactions
associated
with
67
transcripts
(63
unique
genes),
enriched
functional
pathways,
including
immune-related
post-synaptic
assembly
pathways.
Particularly,
number
HLA
family
genes
(HLA-A,
HLA-B,
HLA-C,
HLA-DRB1,
HLA-DRB5,
HLA-DPA1,
HLA-K,
HLA-DQB1,
HLA-DMA)
were
observed
as
having
changes
interplay.
Our
findings
especially
implicate
pathways
targets
regulatory
interactions.
may
thus
complexity
pathogenies
patients.
study
provides
new
knowledge
context
regulations,
it
concerns
status
AD.
npj Parkinson s Disease,
Год журнала:
2025,
Номер
11(1)
Опубликована: Фев. 25, 2025
Blood
and
urine
biomarkers
are
commonly
used
to
diagnose
monitor
chronic
diseases.
We
initially
screened
67
biomarkers,
including
4
63
blood
identified
13
significantly
associated
with
Parkinson's
disease
(PD).
Among
these,
we
discovered
three
novel
markers
demonstrating
strong
associations:
phosphate
(P
=
1.81
×
10−3),
AST/ALT
ratio
8.53
10−6),
immature
reticulocyte
fraction
(IRF)
3.49
10−20).
also
substantiated
eight
well-studied
elucidated
the
roles
of
two
previously
ambiguous
biomarkers.
Our
analyses
confirmed
IGF-1
7.46
10−29)
as
a
risk
factor,
C-reactive
protein
(CRP)
1.43
10−3)
protective
against
PD.
Genetic
analysis
highlighted
that
IRF,
CRP,
share
significant
genetic
loci
PD,
notably
at
MAPT,
SETD1A,
HLA-DRB1,
HLA-DQA1.
Furthermore,
Mendelian
randomization
(MR)
suggested
potential
causal
associations
between
IGF-1,
several
may
be
developing
providing
valuable
insights
for
further
exploration
PD-related
Egyptian Journal of Medical Human Genetics,
Год журнала:
2025,
Номер
26(1)
Опубликована: Март 4, 2025
Abstract
Background
Huntington's
disease
(HD)
could
cause
progressive
motor
deficits,
psychiatric
symptoms,
and
cognitive
impairment.
With
the
increasing
use
of
pharmacotherapies
theoretically
target
neurotransmitters,
incidence
HD
is
still
not
decreasing.
However,
molecular
pathogenesis
have
been
illuminate.
It
momentous
to
further
examine
HD.
Methods
The
next
generation
sequencing
dataset
GSE105041
was
downloaded
from
Gene
Expression
Omnibus
(GEO)
database.
Using
DESeq2
in
R
bioconductor
package
screen
differentially
expressed
genes
(DEGs)
between
samples
normal
control
samples.
ontology
(GO)
term
REACTOME
pathway
enrichment
were
performed
on
DEGs.
Meanwhile,
using
Integrated
Interactions
Database
(IID)
database
Cytoscape
software
construct
protein–protein
interaction
(PPI)
network
module
analysis,
identify
hub
with
highest
value
node
degree,
betweenness,
stress
closeness
scores.
miRNA-hub
gene
regulatory
TF-hub
constructed
analyzed.
Receiver
operating
characteristic
curves
analysis
for
diagnostic
genes.
Results
We
identified
958
DEGs,
consisting
479
up
regulated
DEGs
down
GO
terms
analyses
by
g:Profiler
online
results
revealed
that
mainly
enriched
multicellular
organismal
process,
developmental
signaling
GPCR
MHC
class
II
antigen
presentation.
Network
Analyzer
plugin
PPI
network,
LRRK2,
MTUS2,
HOXA1,
IL7R,
ERBB3,
EGFR,
TEX101,
WDR76,
NEDD4L
COMT
selected
as
Hsa-mir-1292-5p,
hsa-mir-4521,
ESRRB
SREBF1
are
potential
biomarkers
predicted
be
associated
Conclusion
This
study
investigated
key
pathways
interactions
its
complications,
which
might
help
reveal
correlation
complications.
current
investigation
captured
prediction,
follow-up
biological
experiments
enforced
validation.
Immunobiology,
Год журнала:
2025,
Номер
unknown, С. 152892 - 152892
Опубликована: Март 1, 2025
Progressive
supranuclear
palsy
(PSP)
is
a
neurodegenerative
disease
showing
pathological
tau
accumulation
in
subcortical
neurons
and
glial
cells.
The
human
leukocyte
antigen
(HLA)
locus
on
chromosome
6
polymorphic
region
with
complex
linkage
patterns
that
has
been
implicated
several
autoimmune
neurological
disorders.
HLA
not
systematically
examined
PSP.
It
unclear
whether
can
interact
to
induce
an
mechanism.
We
evaluated
autopsy
confirmed
PSP
cohort
(n
=
44)
compared
allele/haplotype
frequencies
those
of
the
reference
group
local
deceased
Canadian
donor
pool.
performed
HLA-Tau
peptide
binding
prediction
modelling
Class
II
-
Tau
Peptide
interactions.
Odds
ratio
was
2.94
(95
%
CI
1.01
8.55;
p
0.047)
for
DQB1*06:01
allele,
2.59
1.39
4.83;
0.0025)
narcolepsy-associated
haplotype
(DRB1*15:01-DQB1*06:02).
One
patient
4-repeat
PSP-type
pathology
carrier
IgLON5-associated
(DRB1*10:01-DQB1*05:01).
interactions
revealed
strong-binding
peptides
but
PSP-protofilament
fold
alleles
DQA1*01:02-DQB1*06:02
DQA1*01:03-DQB1*06:01.
Our
study
suggests
epitopes
within
may
bind
are
found
subset
patients
supporting
notion
pathophysiological
component.
These
findings
have
implications
subtyping
stratifying
therapies,
including
targeting
immune
modulation.
International Journal of Molecular Sciences,
Год журнала:
2024,
Номер
25(13), С. 7354 - 7354
Опубликована: Июль 4, 2024
Antigen
presentation
is
a
crucial
mechanism
that
drives
the
T
cell-mediated
immune
response
and
development
of
Multiple
Sclerosis
(MS).
Genetic
alterations
within
highly
variable
Major
Histocompatibility
Complex
Class
II
(MHC
II)
have
been
proven
to
result
in
significant
changes
molecular
basis
antigen
clinical
course
patients
with
both
Adult-Onset
MS
(AOMS)
Pediatric-Onset
(POMS).
Among
numerous
polymorphisms
Human
Leucocyte
Antigens
(HLA),
MHC
complex,
HLA-DRB1*15:01
has
labeled,
Caucasian
ethnic
groups,
as
high-risk
allele
for
due
ability
its
structure
increase
affinity
Myelin
Basic
Protein
(MBP)
epitopes.
This
characteristic,
among
others,
context
trimolecular
complex
or
immunological
synapsis,
provides
foundation
autoimmunity
triggered
by
environmental
endogenous
factors.
As
all
professional
presenting
cells,
macrophages
are
characterized
expression
often
implicated
formation
lesions.
Increased
presence
M1
associated
progression
onset
disease,
each
involving
separate
but
similar
mechanisms.
In
this
critical
narrative
review,
we
focus
on
macrophages,
discussing
how
HLA
genetic
can
promote
dysregulation
population's
homeostasis
periphery
Central
Nervous
System
(CNS).
We
also
explore
potential
interconnection
observed
pathological
macrophage
mechanisms
function
diverse
alleles
neurodegenerative
CNS,
seen
MS,
comparing
available
data
through
prism
HLA-immunogenetics.
Finally,
discuss
experimental
pharmacological
approaches
targeting
based
cell
phenotype
modulation
genotype
involvement
try
reveal
fertile
ground
novel
drugs.
Parkinson's
disease
(PD)
is
an
incurable,
progressive
and
common
movement
disorder
that
increasing
in
incidence
globally
because
of
population
aging.
We
hypothesized
the
landscape
rare,
protein-altering
variants
could
provide
further
insights
into
pathogenesis.
Here
we
performed
whole-exome
sequencing
followed
by
gene-based
tests
on
4,298
PD
cases
5,512
controls
Asian
ancestry.
showed
GBA1
SMPD1
were
significantly
associated
with
risk,
replication
a
5,585
5,642
controls.
refined
variant
classification
using
vitro
assays
reduced
enzymatic
activity
display
strongest
association
(<44%
activity,
odds
ratio
(OR)
=
2.24,
P
1.25
×
10−15)
risk.
Moreover,
80.5%
carriers
harbored
Asian-specific
p.Pro332Arg
(OR
2.16;
4.47
10−8).
Our
findings
highlight
utility
performing
exome
diverse
ancestry
groups
to
identify
rare
genes
previously
unassociated
disease.
Using
assays,
Chew,
Liu,
Li,
Chung
et
al.
identified
protein-coding
associate
risk
across
cohorts
descent.