Detecting gene expression in Caenorhabditis elegans DOI Creative Commons
John A. Calarco, Seth R. Taylor, David M. Miller

и другие.

Genetics, Год журнала: 2024, Номер unknown

Опубликована: Дек. 18, 2024

Abstract Reliable methods for detecting and analyzing gene expression are necessary tools understanding development investigating biological responses to genetic environmental perturbation. With its fully sequenced genome, invariant cell lineage, transparent body, wiring diagram, detailed anatomy, wide array of tools, Caenorhabditis elegans is an exceptionally useful model organism linking cellular phenotypes. The new techniques in recent years has greatly expanded our ability detect at high resolution. Here, we provide overview C. elegans, including transcripts proteins situ, bulk RNA sequencing whole worms specific tissues cells, single-cell sequencing, high-throughput proteomics. We discuss important considerations choosing among these publicly available online resources data.

Язык: Английский

Lipid Oxidation at the Crossroads: Oxidative Stress and Neurodegeneration Explored in Caenorhabditis elegans DOI Creative Commons
Julia Tortajada-Pérez, Andrea del Valle Carranza,

Cristina Trujillo-Del Río

и другие.

Antioxidants, Год журнала: 2025, Номер 14(1), С. 78 - 78

Опубликована: Янв. 10, 2025

Lipid metabolism plays a critical role in maintaining cellular integrity, especially within the nervous system, where lipids support neuronal structure, function, and synaptic plasticity. However, this essential metabolic pathway is highly susceptible to oxidative stress, which can lead lipid peroxidation, damaging process induced by reactive oxygen species. peroxidation generates by-products that disrupt many functions, with strong impact on proteostasis. In review, we explore of oxidation protein folding its associated pathological implications, particular focus findings neurodegeneration from Caenorhabditis elegans studies, an animal model remains underutilized. Additionally, highlight effectiveness different methodologies applied nematode deepen our understanding intricate process. system any animal, including mammals invertebrates, disturb delicate balance homeostasis, leading build-up toxic by-products, misfolding, key factors neurodegenerative diseases. This disruption contributes pathogenesis disorders such as Alzheimer's, Parkinson's, or Huntington's disease. The studies offer valuable insights into these complex processes potential avenues for developing targeted therapies mitigate disease progression.

Язык: Английский

Процитировано

0

Temperature-jump microscopy and interaction of Hsp70 heat shock protein with a client protein in vivo DOI Creative Commons

Aniket Ravan,

Samuel Procopio,

Yann R. Chemla

и другие.

Methods, Год журнала: 2024, Номер unknown

Опубликована: Окт. 1, 2024

Язык: Английский

Процитировано

1

A new player in the biogenesis of lysosome-related organelles DOI
Anbing Shi

The Journal of Cell Biology, Год журнала: 2024, Номер 223(10)

Опубликована: Сен. 11, 2024

How are Rab GTPases regulated during lysosome-related organelle (LRO) biogenesis? Li et al. (https://doi.org/10.1083/jcb.202402016) identify LYSMD proteins as crucial activators of Rab32-family in LRO development, shedding light on the previously ambiguous mechanisms governing functionality this process.

Язык: Английский

Процитировано

0

In-cell processing enables rapid and in-depth proteome analysis of low-input Caenorhabditis elegans DOI Creative Commons

Malek Elsayyid,

Jessica E. Tanis, Yanbao Yu

и другие.

bioRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Сен. 19, 2024

Abstract Caenorhabditis elegans is a widely used genetic model organism, however, the worm cuticle complicates extraction of intracellular proteins, prerequisite for typical bottom-up proteomics. Conventional physical disruption procedures are not only time-consuming, but can also cause significant sample loss, making it difficult to perform proteomics with low-input samples. Here, first time, we present an on-filter in-cell (OFIC) processing approach, which digest C. proteins directly in cells organism after methanol fixation. With OFIC and single-shot LCMS analysis, identified over 9,400 from 200 worms, largest proteome reported date that did require fractionation or enrichment. We systematically evaluated performance approach by comparing conventional lysis-based methods. Our data suggest equivalent unbiased identification quantitation. further even lower input samples, then this method determine how impacted loss superoxide dismutase sod-1 , ortholog human SOD-1 gene associated amyotrophic lateral sclerosis (ALS). Analysis 8,800 50 worms as initial showed affects abundance required stress response, ribosome biogenesis, metabolism. In conclusion, our streamlined be broadly applied other systems, minimizes while offering simplest workflow analysis.

Язык: Английский

Процитировано

0

The neurotrophic factor MANF regulates autophagy and lysosome function to promote proteostasis in Caenorhabditis elegans DOI Creative Commons
Shane K. B. Taylor, Jessica H. Hartman, Bhagwati P. Gupta

и другие.

Proceedings of the National Academy of Sciences, Год журнала: 2024, Номер 121(43)

Опубликована: Окт. 17, 2024

The conserved mesencephalic astrocyte-derived neurotrophic factor (MANF) is known for protecting dopaminergic neurons and functioning in various other tissues. Previously, we showed that

Язык: Английский

Процитировано

0

Detecting gene expression in Caenorhabditis elegans DOI Creative Commons
John A. Calarco, Seth R. Taylor, David M. Miller

и другие.

Genetics, Год журнала: 2024, Номер unknown

Опубликована: Дек. 18, 2024

Abstract Reliable methods for detecting and analyzing gene expression are necessary tools understanding development investigating biological responses to genetic environmental perturbation. With its fully sequenced genome, invariant cell lineage, transparent body, wiring diagram, detailed anatomy, wide array of tools, Caenorhabditis elegans is an exceptionally useful model organism linking cellular phenotypes. The new techniques in recent years has greatly expanded our ability detect at high resolution. Here, we provide overview C. elegans, including transcripts proteins situ, bulk RNA sequencing whole worms specific tissues cells, single-cell sequencing, high-throughput proteomics. We discuss important considerations choosing among these publicly available online resources data.

Язык: Английский

Процитировано

0