Proteogenomic annotation of T6SS components identified in Bacteroides fragilis secretome
Frontiers in Microbiology,
Год журнала:
2025,
Номер
16
Опубликована: Фев. 11, 2025
Introduction
Bacteroides
fragilis
(Bf)’s
T6SS
locus
has
been
characterized
and
shown
to
have
functional
activity
in
competition
experiments.
It
demonstrated
that
symbiont
nontoxigenic
Bf
strains
a
more
effective
“weapon”
effect
on
pathogenic
Bf,
which
is
realized
through
the
of
effector-immune
(E-I)
protein
pairs.
Intensive
study
structure
led
an
understanding
certain
issues
related
its
activity,
but
exact
regulatory
mechanisms
E-I
pair
remain
unclear.
Proteomic
annotation
components
detailed
descriptions
all
immune-effector
pairs
are
currently
available.
In
this
research,
we
performed
proteogenomic
analysis
subsequent
proteomic
toxigenic
BOB25.
Material
methods
Fractionated
cells,
cultivated
media
vesicles
were
prepared
for
proteome
by
HPLC-MS/MS.
Proteogenomic
comparative
genomic
loci
BOB25
carried
out
comparison
with
reference
genomes
following
strains:
JIM10,
NCTC
9343
638R.
Results
According
data
obtained,
represented
types
analysed
samples.
The
identified
culture
cells:
ClpV
(TssH),
TssK,
TssC,
TssB,
Hcp
(TssD),
TetR.
predicted
effector
AKA51715.1
(VU15_08315)
was
also
detected
media.
greatest
amount
proteins,
including
protein,
vesicle
samples,
observed
TEM.
Potential
effectors,
(VU15_08315),
AKA51716.1
(VU15_08320),
AKA51728.1
(VU15_08385)
immune
AKA51727.1
(VU15_08380),
vesicles.
Discussion
presence
proteins
secretome
indicates
high
without
bacterial
competition.
possible
used
bacteria
regulate
population
size
altering
different
repertoires
Язык: Английский
Harnessing the human gut microbiota: an emerging frontier in combatting multidrug-resistant bacteria
Frontiers in Immunology,
Год журнала:
2025,
Номер
16
Опубликована: Март 17, 2025
Antimicrobial
resistance
(AMR)
has
become
a
major
and
escalating
global
health
threat,
undermining
the
effectiveness
of
current
antibiotic
antimicrobial
therapies.
The
rise
multidrug-resistant
bacteria
led
to
increasingly
difficult-to-treat
infections,
resulting
in
higher
morbidity,
mortality,
healthcare
costs.
Tackling
this
crisis
requires
development
novel
agents,
optimization
therapeutic
strategies,
initiatives
infection
surveillance
control.
Recent
studies
highlight
crucial
role
human
gut
microbiota
defending
against
AMR
pathogens.
A
balanced
protects
body
through
mechanisms
such
as
colonization
resistance,
positioning
it
key
ally
fight
AMR.
In
contrast,
dysbiosis
disrupts
defense,
thereby
facilitating
persistence,
colonization,
dissemination
resistant
This
review
will
explore
how
influence
drug-resistant
bacterial
its
involvement
various
types
AMR-related
potential
for
microbiota-targeted
therapies,
fecal
transplantation,
prebiotics,
probiotics,
phage
therapy.
Elucidating
interactions
between
pathogens
provide
critical
insights
developing
strategies
prevent
treat
infections.
While
previous
reviews
have
focused
on
general
impact
health,
specifically
look
at
latest
research
evolution
spread
AMR,
highlighting
strategies.
Язык: Английский
Origin and function of beneficial bacterial symbioses in insects
Nature Reviews Microbiology,
Год журнала:
2025,
Номер
unknown
Опубликована: Март 27, 2025
Язык: Английский
Comparative Genomic Profiles of Salmonella Typhimurium and Salmonella Dublin Bovine Isolates from the U.S. Indicate Possible Factors Associated with the Host Adaptation of Salmonella Dublin in the Region
Microorganisms,
Год журнала:
2025,
Номер
13(4), С. 886 - 886
Опубликована: Апрель 12, 2025
Salmonella
Dublin
(S.
Dublin)
and
Typhimurium
Typhimurium)
are
commonly
linked
to
bovine
salmonellosis.
S.
is,
however,
considered
a
bovine-adapted
serovar
for
primarily
infecting
thriving
in
cattle.
Using
(a
generalist
serovar)
as
benchmark,
this
study
investigates
genomic
factors
contributing
Dublin’s
adaptation
cattle
hosts
the
U.S.
A
total
of
1337
787
whole-genome
sequences
from
sources
were
analyzed
with
CARD
(version
4.0.0),
ARG-NOTT
6),
AMRfinderPlus
4.0.3)
antimicrobial
resistance
(AMR)
genes;
VFDB
virulence
AMRFinderPlus
stress
Plasmidfinder
plasmids.
Existing
clonal
groups
among
isolates
two
serovars
also
investigated
using
Hierarchical
Clustering
Core
Genome
Multi-Locus
Sequence
Typing
(HierCC-cgMLST)
model.
The
results
revealed
minimal
variation
isolates.
Comparatively,
IncX1
plasmid
was
somewhat
exclusively
identified
each
carried
an
average
four
plasmids
(p-value
<
0.05).
Furthermore,
exhibited
higher
prevalence
AMR
genes
against
key
antimicrobials,
including
aminoglycosides,
beta-lactams,
tetracyclines,
sulfonamides,
used
production.
Additionally,
Type
VI
secretion
system
tssJKLM
hcp2/tssD2,
essential
colonization,
found
over
50%
these
possessing
that
confer
heavy
metal
stressors,
like
mercury.
These
findings
suggest
is
supported
by
conserved
genetic
makeup
enriched
genes,
factors,
stress-related
enabling
it
colonize
persist
gut.
Язык: Английский
Host Specificity of Snodgrassella in Eastern and Western Honeybees and Its Effects on Naturally Occurring Deformed Wing Virus Titers
Insects,
Год журнала:
2025,
Номер
16(5), С. 478 - 478
Опубликована: Май 1, 2025
Honeybee
gut
microbiota
undergoes
long-term
adaptive
evolution
with
the
host,
resulting
in
host-specific
genomic
and
functional
characteristics.
However,
specific
role
of
host-specialized
strains
shaping
host
physiological
functions
remains
understudied.
This
study
investigates
specificity
core
symbiont
Snodgrassella
A.
cerana
mellifera,
exploring
its
effects
on
immune
response
natural
virus
suppression
through
analysis
colonization
experiments.
Genomic
revealed
that
strain
from
exhibited
a
larger
genome
greater
gene
content
compared
to
cerana.
Competitive
experiments
showed
although
different
origins
had
similar
efficiency
displayed
clear
home-field
advantage
competitive
process.
Moreover,
Inoculation
mellifera
native
significantly
reduced
Deformed
Wing
Virus
(DWV)
titers,
whereas
non-native
no
effect.
In
contrast,
neither
altered
DWV
or
Sacbrood
(SBV)
levels
Immune
only
upregulated
defensin
2
while
significant
changes
occurred
either
strain.
These
results
suggest
exhibits
at
level,
influencing
both
suppression,
showing
efficacy
these
roles,
especially
mellifera.
Язык: Английский