
Biology Direct, Год журнала: 2025, Номер 20(1)
Опубликована: Май 6, 2025
Abstract Ubiquitin-specific protease 8 (USP8) is a deubiquitinating enzyme with essential functions in protein trafficking and stability. It multidomain protein, an N-terminal MIT (microtubule interacting trafficking) domain, followed by non-catalytic rhodanese (Rhod) long intrinsically disordered region, C-terminal catalytic domain. The domain of USP8 known to mediate protein-protein interactions through binding short linear motifs. Rhod also involved interactions, however detailed insights into these remain limited. In this study we explore the motif-based domains using combination proteomic peptide-phage display, peptide arrays deep mutational scanning. We show that can bind ligands general [DE][LIF]x{2,3}R[FYIL]xxL[LV] consensus motif. uncover peptide-binding define two distinct motifs (Rx[LI]xGxxxPxxL G[LV][DE][IM]WExKxxxLxE) for scanning different ligands. Using motif information, predict sites within interactors substrates validate array analysis. Our findings demonstrate both are be bound degenerate information on preference provide novel molecular recognition events underlie function enzyme.
Язык: Английский