Journal of Molecular Evolution,
Год журнала:
2017,
Номер
84(2-3), С. 69 - 84
Опубликована: Фев. 23, 2017
The
ability
to
design
synthetic
genes
and
engineer
biological
systems
at
the
genome
scale
opens
new
means
by
which
characterize
phenotypic
states
responses
of
perturbations.
One
emerging
method
involves
inserting
artificial
into
bacterial
genomes
examining
how
its
adapt
each
other.
Here
we
report
development
implementation
a
modified
approach
this
method,
in
phylogenetically
inferred
are
inserted
microbial
genome,
laboratory
evolution
is
then
used
examine
adaptive
potential
resulting
hybrid
genome.
Specifically,
engineered
an
approximately
700-million-year-old
ancestral
variant
tufB,
essential
gene
encoding
elongation
factor
Tu,
it
modern
Escherichia
coli
place
native
tufB
gene.
While
ancient
homolog
was
not
lethal
cell,
did
cause
twofold
decrease
organismal
fitness,
mainly
due
reduced
protein
dosage.
We
subsequently
evolved
replicate
populations
for
2000
generations
examined
response
via
fitness
assays,
whole
sequencing,
proteomics,
biochemical
assays.
Hybrid
lineages
exhibit
general
strategy
cost
ameliorated
part
upregulation
production.
Our
results
suggest
that
ancient–modern
recombinant
may
pave
way
synthesis
organisms
phenotypes,
these
prove
useful
elucidating
insights
historical
processes.
Astrobiology,
Год журнала:
2018,
Номер
18(6), С. 663 - 708
Опубликована: Май 4, 2018
In
the
coming
years
and
decades,
advanced
space-
ground-based
observatories
will
allow
an
unprecedented
opportunity
to
probe
atmospheres
surfaces
of
potentially
habitable
exoplanets
for
signatures
life.
Life
on
Earth,
through
its
gaseous
products
reflectance
scattering
properties,
has
left
fingerprint
spectrum
our
planet.
Aided
by
universality
laws
physics
chemistry,
we
turn
Earth's
biosphere,
both
in
present
geologic
time,
analog
that
aid
search
life
elsewhere.
Considering
insights
gained
from
modern
ancient
broader
array
hypothetical
exoplanet
possibilities,
have
compiled
a
comprehensive
overview
current
understanding
potential
biosignatures,
including
gaseous,
surface,
temporal
biosignatures.
We
additionally
survey
biogenic
spectral
features
are
well
known
specialist
literature
but
not
yet
been
robustly
vetted
context
briefly
review
advances
assessing
biosignature
plausibility,
novel
methods
determining
chemical
disequilibrium
remotely
obtainable
data
assessment
tools
minimum
biomass
required
maintain
short-lived
gases
as
atmospheric
signatures.
focus
particularly
made
since
seminal
Des
Marais
et
al.
The
purpose
this
work
is
propose
new
strategies,
goal
companion
articles
series,
literature,
draw
meaningful
connections
between
seemingly
disparate
areas,
clear
way
path
forward.
Key
Words:
Exoplanets—Biosignatures—Habitability
markers—Photosynthesis—Planetary
surfaces—Atmospheres—Spectroscopy—Cryptic
biospheres—False
positives.
Astrobiology
18,
663–708.
1.
Introduction
1.1.
Requirements
1.2.
Exoplanet
definitions
1.3.
Biosignature
categories
2.
Evaluating
Planetary
Habitability
3.
Overview
Terrestrial
Modeling
Studies
3.1.
Observations
earth
3.2.
Spectral
models
3.3.
Photochemical
studies
terrestrial
3.4.
Earth
time
4.
Gaseous
Biosignatures
4.1.
4.2.
Earth-like
4.2.1.
Oxygen
(O2)
4.2.2.
Ozone
(O3)
4.2.3.
Methane
(CH4)
4.2.4.
Nitrous
oxide
(N2O)
4.2.5.
Sulfur
(DMS,
DMDS,
CH3SH)
relation
detectable
C2H6
4.2.6.
Methyl
chloride
(CH3Cl)
4.2.7.
Haze
4.2.8.
Other
4.3.
“False
positives”
biotic
O2/O3
possible
discriminators
4.4.
other
types
4.5.
Effects
host
star
photochemistry
4.6.
Impacts
flares
particle
events
5.
Surface
5.1.
Photosynthesis
5.1.1.
Principles
photosynthesis
5.1.1.1.
Relationship
band
gap
wavelength
reductant
generation
pigment
color
5.1.1.2.
Uniqueness
OP
5.1.2.
Photosynthetic
pigments
phototrophs
5.1.2.1.
Structure
5.1.2.2.
Light
absorption
5.1.3.
vegetation
“red
edge”
5.1.4.
Speculation
about
5.2.
Retinal
5.3.
Alternative
surface
biosignatures:
nonphotosynthetic
5.4.
False
positive
biosignatures
5.5.
Chiral
polarization
5.6.
Fluorescence
bioluminescence
6.
Temporal
6.1.
Oscillations
6.2.
7.
Assessing
Plausibility
7.1.
Chemical
7.2.
Biomass
estimation
7.3.
Applications
network
theory
8.
Cryptic
Biospheres:
Negatives”
Life?
9.
Prospects
Detecting
10.
Summary
Astrobiology,
Год журнала:
2018,
Номер
18(6), С. 630 - 662
Опубликована: Май 10, 2018
We
describe
how
environmental
context
can
help
determine
whether
oxygen
(O2)
detected
in
extrasolar
planetary
observations
is
more
likely
to
have
a
biological
source.
Here
we
provide
an
in-depth,
interdisciplinary
example
of
O2
biosignature
identification
and
observation,
which
serves
as
the
prototype
for
development
general
framework
assessment.
Photosynthetically
generated
potentially
strong
biosignature,
at
high
abundance,
it
was
originally
thought
be
unambiguous
indicator
life.
However,
faces
two
major
challenges:
(1)
only
present
abundance
relatively
short
period
Earth's
history
(2)
now
know
several
potential
mechanisms
that
generate
abundant
without
life
being
present.
Consequently,
our
ability
interpret
both
presence
absence
exoplanetary
spectrum
relies
on
understanding
context.
examine
coevolution
with
early
environment
identify
interplay
sources
sinks
may
suppressed
release
into
atmosphere
billion
years,
producing
false
negative
biologically
O2.
These
studies
suggest
characteristics
enhance
negatives
should
considered
when
selecting
targets
searches.
review
most
recent
knowledge
positives
O2,
processes
atmospheric
biosphere.
examples
future
photometric,
spectroscopic,
time-dependent
other
aspects
used
rule
out
thereby
increase
confidence
any
observed
indeed
biosignature.
insights
will
guide
inform
exoplanet
characterization
missions.
Key
Words:
Biosignatures—Oxygenic
photosynthesis—Exoplanets—Planetary
atmospheres.
Astrobiology
18,
630–662.
Nature Communications,
Год журнала:
2021,
Номер
12(1)
Опубликована: Май 24, 2021
Abstract
The
search
for
alien
life
is
hard
because
we
do
not
know
what
signatures
are
unique
to
life.
We
show
why
complex
molecules
found
in
high
abundance
universal
biosignatures
and
demonstrate
the
first
intrinsic
experimentally
tractable
measure
of
molecular
complexity,
called
assembly
index
(MA).
To
this
calculate
complexity
several
million
validate
that
their
can
be
determined
by
mass
spectrometry.
This
approach
allows
us
identify
from
a
set
diverse
samples
around
world,
outer
space,
laboratory,
demonstrating
it
possible
build
detection
experiment
based
on
MA
could
deployed
extraterrestrial
locations,
used
as
scale
quantify
constraints
needed
direct
prebiotically
plausible
processes
laboratory.
Such
an
vital
finding
elsewhere
universe
or
creating
de-novo
lab.
Astrobiology,
Год журнала:
2018,
Номер
18(6), С. 739 - 778
Опубликована: Июнь 1, 2018
Exoplanet
hunting
efforts
have
revealed
the
prevalence
of
exotic
worlds
with
diverse
properties,
including
Earth-sized
bodies,
which
has
fueled
our
endeavor
to
search
for
life
beyond
Solar
System.
Accumulating
experiences
in
astrophysical,
chemical,
and
climatological
characterization
uninhabitable
planets
are
paving
way
potentially
habitable
planets.
In
this
paper,
we
review
possibilities
limitations
characterizing
temperate
terrestrial
future
observational
capabilities
through
2030s
beyond,
as
a
basis
broad
range
discussions
on
how
advance
"astrobiology"
exoplanets.
We
discuss
observability
not
only
proposed
biosignature
candidates
themselves,
but
also
more
general
planetary
properties
that
provide
circumstantial
evidence,
since
evaluation
any
candidate
relies
their
context.
Characterization
Earth-size
coming
years
will
focus
those
around
nearby
late-type
stars.
JWST
later
30
meter-class
ground-based
telescopes
empower
chemical
investigations.
Spectroscopic
studies
solar-type
stars
likely
require
designated
spacecraft
mission
direct
imaging,
leveraging
technologies
already
being
developed
tested
part
WFIRST
mission.
Successful
initial
few
targets
be
an
important
touchstone
toward
detailed
scrutiny
larger
survey
envisioned
2030.
The
outlook
paper
presents
may
help
develop
new
techniques
detect
relevant
features
well
frameworks
diagnose
based
observables.
The Astrophysical Journal,
Год журнала:
2018,
Номер
867(1), С. 76 - 76
Опубликована: Ноя. 1, 2018
The
TRAPPIST-1
planetary
system
provides
an
unprecedented
opportunity
to
study
terrestrial
exoplanet
evolution
with
the
James
Webb
Space
Telescope
(JWST)
and
ground-based
observatories.
Since
M
dwarf
planets
likely
experience
extreme
volatile
loss,
may
have
highly-evolved,
possibly
uninhabitable
atmospheres.
We
used
a
versatile,
1D
terrestrial-planet
climate
model
line-by-line
radiative
transfer
mixing
length
convection
(VPL
Climate)
coupled
photochemistry
simulate
environmental
states
for
planets.
present
equilibrium
climates
self-consistent
atmospheric
compositions,
observational
discriminants
of
post-runaway,
desiccated,
10-100
bar
O2-
CO2-dominated
atmospheres,
including
interior
outgassing,
as
well
water-rich
compositions.
Our
simulations
show
range
surface
temperatures,
most
which
are
not
habitable,
although
aqua-planet
e
could
maintain
temperate
given
Earth-like
geological
outgassing
CO2.
find
that
desiccated
h
produce
habitable
temperatures
beyond
maximum
greenhouse
distance.
Potential
these
atmospheres
in
transmission
emission
spectra
influenced
by
photochemical
processes
aerosol
formation,
include
collision-induced
oxygen
absorption
(O2-O2),
O3,
CO,
SO2,
H2O,
CH4
features,
transit
signals
up
200
ppm.
simulated
consistent
K2,
HST,
Spitzer
observations
For
several
we
b
is
unlikely
aerosols.
These
results
can
inform
JWST
observation
planning
data
interpretation
other
Astrobiology,
Год журнала:
2019,
Номер
19(9), С. 1075 - 1102
Опубликована: Июль 23, 2019
Microbial
life
permeates
Earth's
critical
zone
and
has
likely
inhabited
nearly
all
our
planet's
surface
near
subsurface
since
before
the
beginning
of
sedimentary
rock
record.
Given
vast
time
that
Earth
been
teeming
with
life,
do
astrobiologists
truly
understand
what
geological
features
untouched
by
biological
processes
would
look
like?
In
search
for
extraterrestrial
in
Universe,
it
is
to
determine
constitutes
a
biosignature
across
multiple
scales,
how
this
compares
"abiosignatures"
formed
nonliving
processes.
Developing
standards
abiotic
biotic
characteristics
provide
quantitative
metrics
comparison
different
data
types
observational
frames.
The
evidence
detection
falls
into
three
categories
biosignatures:
(1)
substances,
such
as
elemental
abundances,
isotopes,
molecules,
allotropes,
enantiomers,
minerals,
their
associated
properties;
(2)
objects
are
physical
mats,
fossils
including
trace-fossils
microbialites
(stromatolites),
concretions;
(3)
patterns,
three-dimensional
or
conceptual
Astrobiology,
Год журнала:
2021,
Номер
21(10), С. 1277 - 1304
Опубликована: Июль 20, 2021
The
recent
candidate
detection
of
~1
ppb
phosphine
in
the
middle
atmosphere
Venus
is
so
unexpected
that
it
requires
an
exhaustive
search
for
explanations
its
origin.
Phosphorus-containing
species
have
not
been
modelled
Venus'
before
and
our
work
represents
first
attempt
to
model
phosphorus
Venusian
atmosphere.
We
thoroughly
explore
potential
pathways
formation
a
environment,
including
planet's
atmosphere,
cloud
haze
layers,
surface,
subsurface.
investigate
gas
reactions,
geochemical
photochemistry,
other
non-equilibrium
processes.
None
these
production
are
sufficient
explain
presence
levels
on
Venus.
If
PH3's
confirmed,
therefore
highly
likely
be
result
process
previously
considered
plausible
conditions.
could
unknown
geochemistry,
or
even
aerial
microbial
life,
given
Earth
exclusively
associated
with
anthropogenic
biological
sources.
adds
complexity
chemical
processes
environment
motivates
situ
follow
up
sampling
missions
Our
analysis
provides
template
investigation
as
biosignature
worlds.
International Journal of Astrobiology,
Год журнала:
2022,
Номер
21(2), С. 47 - 61
Опубликована: Фев. 7, 2022
Abstract
Conventionally,
intelligence
is
seen
as
a
property
of
individuals.
However,
it
also
known
to
be
collectives.
Here,
we
broaden
the
idea
collective
and
extend
planetary
scale.
We
consider
ways
in
which
appearance
technological
may
represent
kind
scale
transition,
thus
might
not
something
happens
on
planet
but
planet,
much
some
models
propose
origin
life
itself
was
phenomenon.
Our
approach
follows
recognition
among
researchers
that
correct
understand
key
aspects
its
evolution
planetary,
opposed
more
traditional
focus
individual
species.
explore
concept
prove
useful
for
three
distinct
domains:
Earth
Systems
Exoplanet
studies;
Anthropocene
Sustainability
study
Technosignatures
Search
Extraterrestrial
Intelligence
(SETI).
argue
explorations
intelligence,
defined
acquisition
application
knowledge
operating
at
integrated
into
function
coupled
systems,
can
framework
understanding
possible
paths
long-term
inhabited
planets
including
future
trajectories
predicting
features
intelligentially
steered
other
worlds.
The Astronomical Journal,
Год журнала:
2023,
Номер
165(6), С. 267 - 267
Опубликована: Июнь 1, 2023
Abstract
Molecular
oxygen
is
a
strong
indicator
of
life
on
Earth
and
may
indicate
biological
processes
exoplanets
too.
Recent
studies
proposed
that
Earth-like
O
2
levels
might
be
detectable
nearby
using
high-resolution
spectrographs
future
extremely
large
telescopes
(ELTs).
However,
these
did
not
consider
constraints
like
relative
velocities,
planet
occurrence
rates,
target
observability.
We
expanded
past
by
creating
homogeneous
catalog
286,391
main-sequence
stars
within
120
pc
Gaia
DR3
used
the
Bioverse
framework
to
simulate
likelihood
finding
transiting
analogs.
also
simulated
survey
M
dwarfs
20
accounting
for
η
⊕
estimates,
transit
probabilities,
observability
determine
how
long
ELTs
theoretical
50–100
m
ground-based
need
observe
probe
with
an
R
=
100,000
spectrograph.
This
would
only
possible
50
yr
up
∼21%
M-dwarf
systems
if
suitable
habitable-zone
analog
was
discovered,
assuming
signals
from
every
observable
partial
each
ELT
can
combined.
If
so,
could
TRAPPIST-1
d–g
16–55
yr,
respectively,
about
half
time
500,000
These
results
have
important
implications
whether
analogs
via
transmission
spectroscopy.
Our
work
provides
most
comprehensive
assessment
date
capabilities
search
beyond
solar
system.
Astrobiology,
Год журнала:
2018,
Номер
18(6), С. 709 - 738
Опубликована: Апрель 20, 2018
Finding
life
on
exoplanets
from
telescopic
observations
is
an
ultimate
goal
of
exoplanet
science.
Life
produces
gases
and
other
substances,
such
as
pigments,
which
can
have
distinct
spectral
or
photometric
signatures.
Whether
not
found
with
future
data
must
be
expressed
probabilities,
requiring
a
framework
biosignature
assessment.
We
present
in
we
advocate
using
biogeochemical
"Exo-Earth
System"
models
to
simulate
potential
biosignatures
spectra
photometry.
Given
actual
observations,
simulations
are
used
find
the
Bayesian
likelihoods
those
occurring
for
scenarios
without
life.
The
latter
includes
"false
positives"
where
abiotic
sources
mimic
biosignatures.
Prior
knowledge
factors
influencing
planetary
inhabitation,
including
previous
combined
give
posterior
probability
existing
given
exoplanet.
Four
components
observation
analysis
necessary.
1)
Characterization
stellar
(e.g.,
age
spectrum)
exoplanetary
system
properties,
"external"
parameters
mass
radius)
determine
exoplanet's
suitability
2)
"internal"
climate)
evaluate
habitability.
3)
Assessment
within
environmental
context
(components
1-2)
any
corroborating
evidence.
4)
Exclusion
false
positives.
resulting
probabilities
life's
existence
map
five
confidence
levels,
ranging
"very
likely"
(90-100%)
unlikely"
($\le$10%)
inhabited.