Forensic Science International Genetics,
Год журнала:
2021,
Номер
56, С. 102620 - 102620
Опубликована: Окт. 25, 2021
Prediction
of
eye
and
hair
colour
from
DNA
can
be
an
important
investigative
tool
in
forensic
cases
if
conventional
profiling
fails
to
match
any
known
suspects
or
cannot
obtain
a
hit
database.
The
HIrisPlex
model
for
simultaneous
predictions
was
developed
usage.
To
genotype
sample,
massively
parallel
sequencing
(MPS)
has
brought
new
possibilities
the
analysis
samples.
As
part
in-house
validation,
this
study
presents
genotyping
predictive
performance
SNPs
Norwegian
population,
using
Verogen's
ForenSeq™
Signature
Prep
Kit
on
MiSeq
FGx
system
webtool.
DNA-profiles
were
successfully
typed
with
input
down
125
pg.
In
samples
<
pg,
false
homozygotes
observed
as
many
92
reads.
accuracies
terms
AUC
high
red
(0.97)
black
(0.93)
colours,
well
blue
(0.85)
brown
(0.94)
colours.
AUCs
blond
(0.72)
(0.70)
considerably
lower.
None
individuals
predicted
have
intermediate
colour.
Therefore,
error
rates
overall
37%
no
probability
threshold
(pmax)
26%
0.7.
We
also
that
more
than
half
incorrect
carrying
rs12913832
GG
genotype.
For
colour,
65%
correctly
when
highest
category
approach.
main
hair.
Utilising
prediction
guide
approach
increased
correct
75%.
Assessment
phenotype-genotype
associations
colours
quantitative
score
(PIE-score),
revealed
AA
descent
had
statistically
significantly
higher
PIE-score
(less
colour)
non-northern
European
descent.
our
knowledge,
not
been
reported
other
studies.
Our
suggests
careful
assessment
target
population
prior
implementation
phenotyping
case
work
is
beneficial.
Pigment Cell & Melanoma Research,
Год журнала:
2024,
Номер
37(4), С. 438 - 452
Опубликована: Март 6, 2024
Melanin
synthesis
involves
the
successful
coordination
of
metabolic
pathways
across
multiple
intracellular
compartments
including
melanosome,
mitochondria,
ER/Golgi,
and
cytoplasm.
While
pigment
production
offers
a
communal
protection
from
UV
damage,
process
also
requires
anabolic
redox
demands
that
must
be
carefully
managed
by
melanocytes.
In
this
report
we
provide
an
updated
review
on
melanin
metabolism,
recent
data
leveraging
new
techniques,
technologies
in
field
metabolism.
We
discuss
many
aspects
intersect
with
known
to
impact
melanoma
phenotypes
behavior.
By
reviewing
metabolism
synthesis,
hope
highlight
outstanding
questions
opportunities
for
future
research
could
improve
patient
outcomes
pigmentary
oncologic
disease
settings.
Integrative and Comparative Biology,
Год журнала:
2021,
Номер
61(4), С. 1517 - 1545
Опубликована: Май 21, 2021
Melanins,
the
main
pigments
of
skin
and
hair
in
mammals,
are
synthesized
within
membrane-bound
organelles
melanocytes
called
melanosomes.
Melanosome
structure
function
determined
by
a
cohort
resident
transmembrane
proteins,
many
which
expressed
only
pigment
cells
localize
specifically
to
Defects
genes
that
encode
melanosome-specific
proteins
or
components
machinery
required
for
their
transport
out
melanosomes
underlie
various
forms
ocular
oculocutaneous
albinism,
characterized
hypopigmentation
hair,
skin,
eyes
visual
impairment.
We
review
major
melanosomes,
including
enzymes
catalyze
steps
melanin
synthesis
from
tyrosine
precursors,
solute
transporters
allow
these
function,
structural
melanosome
shape
deposition.
then
molecular
mechanisms
biosynthetically
delivered
newly
forming
melanosomes-many
shared
other
cell
types
generate
type-specific
lysosome-related
organelles.
also
highlight
unanswered
questions
need
be
addressed
future
investigation.
Physiological Reviews,
Год журнала:
2022,
Номер
103(1), С. 515 - 606
Опубликована: Авг. 18, 2022
The
protonation
state
of
soluble
and
membrane-associated
macromolecules
dictates
their
charge,
conformation,
functional
activity.
In
addition,
protons
(H
+
or
equivalents)
partake
in
numerous
metabolic
reactions
serve
as
a
source
electrochemical
energy
to
drive
the
transmembrane
transport
both
organic
inorganic
substrates.
Stringent
regulation
intracellular
pH
is
therefore
paramount
homeostasis.
Although
cytosolic
has
been
studied
extensively,
our
understanding
determinants
H
concentration
([H
])
organelles
developed
more
slowly,
limited
by
small
size
inaccessibility.
Recently,
however,
targeting
molecular
probes
organellar
lumen
together
with
advances
genomic,
proteomic,
electrophysiological
techniques
have
led
identification
characterization
unique
pumps,
channels,
transporters
responsible
for
establishment
maintenance
intraorganellar
pH.
These
developments
implications
cellular
function
health
disease
are
subject
this
review.
Progress in Retinal and Eye Research,
Год журнала:
2022,
Номер
91, С. 101091 - 101091
Опубликована: Июнь 18, 2022
Albinism
is
a
pigment
disorder
affecting
eye,
skin
and/or
hair.
Patients
usually
have
decreased
melanin
in
affected
tissues
and
suffer
from
severe
visual
abnormalities,
including
foveal
hypoplasia
chiasmal
misrouting.
Combining
our
data
with
those
of
the
literature,
we
propose
single
functional
genetic
retinal
signalling
pathway
that
includes
all
22
currently
known
human
albinism
disease
genes.
We
hypothesise
defects
genesis
or
function
different
intra-cellular
organelles,
melanosomes,
cause
syndromic
forms
(Hermansky-Pudlak
(HPS)
Chediak-Higashi
syndrome
(CHS)).
put
forward
specific
melanosome
impairments
oculocutaneous
(OCA1-8).
Further,
incorporate
GPR143
has
been
implicated
ocular
(OA1),
characterised
by
phenotype
limited
to
eye.
Finally,
include
SLC38A8-associated
FHONDA
causes
an
even
more
restricted
"albinism-related"
misrouting
but
without
pigmentation
defects.
following
pathway,
increasingly
cellular
causing
phenotype:
(HPS1-11/CHS:
albinism)-(OCA1-8:
OCA)-(GPR143:
OA1)-(SLC38A8:
FHONDA).
Beyond
genes
involvement,
also
evaluate
range
(candidate)
regulatory
mechanisms
activity
development,
albinism.
further
suggest
proposed
involved
other
disorders,
such
as
age-related
macular
degeneration.
The
hypotheses
this
report
provide
framework
for
systematic
studies
disorders.
Pigment Cell & Melanoma Research,
Год журнала:
2021,
Номер
34(4), С. 730 - 747
Опубликована: Март 10, 2021
Melanins
are
widely
distributed
in
animals
and
plants;
vertebrates,
most
melanins
present
on
the
body
surface.
The
diversity
of
pigmentation
vertebrates
is
mainly
attributed
to
quantity
ratio
eumelanin
pheomelanin
synthesis.
Most
natural
melanin
pigments
consist
both
varying
ratios,
thus,
their
combined
synthesis
called
"mixed
melanogenesis."
Gene
expression
an
established
mechanism
for
controlling
synthesis;
however,
there
multiple
factors
that
affect
besides
gene
expression.
Due
differential
sensitivity
synthetic
pathways
pH,
melanosomal
pH
likely
plays
a
major
role
mixed
melanogenesis.
Here,
we
focused
various
affecting
melanogenesis
including
(1)
chemical
regulation
synthesis,
(2)
during
normal
effect
melanogenesis,
(3)
mechanisms
control
(proton
pumps,
channels,
transporters,
signaling
pathways).
Pigment Cell & Melanoma Research,
Год журнала:
2021,
Номер
34(4), С. 786 - 799
Опубликована: Май 8, 2021
Abstract
Oculocutaneous
albinism
(OCA)
is
the
most
frequent
presentation
of
albinism,
a
heterogeneous
rare
genetic
condition
generally
associated
with
variable
alterations
in
pigmentation
and
profound
visual
impairment.
There
are
non‐syndromic
syndromic
types
OCA,
depending
on
whether
gene
product
affected
impairs
essentially
function
melanosomes
or,
addition,
that
other
lysosome‐related
organelles
(LROs),
respectively.
Syndromic
OCA
can
be
more
severe
additional
systemic
consequences,
beyond
vision
alterations.
In
addition
to
also
presented
without
obvious
skin
hair
alterations,
ocular
(OA),
related
known
as
foveal
hypoplasia,
optic
nerve
decussation
defects,
anterior
segment
dysgenesis
(FHONDA).
this
review,
we
will
focus
only
genetics
both
human
mouse,
updating
our
current
knowledge
subject.
Journal of Dairy Science,
Год журнала:
2021,
Номер
105(1), С. 468 - 494
Опубликована: Окт. 28, 2021
Genome-wide
association
studies
are
a
powerful
tool
to
identify
genomic
regions
and
variants
associated
with
phenotypes.
However,
only
limited
mutual
confirmation
from
different
is
available.
The
objectives
of
this
study
were
as
well
genes
pathways
the
first-lactation
milk,
fat,
protein,
total
solid
yields;
percentage;
somatic
cell
score
(SCS)
in
Thai
dairy
cattle
population.
Effects
SNPs
estimated
by
weighted
single-step
GWAS,
which
back-solved
breeding
values
predicted
using
BLUP
(ssGBLUP)
fitting
single-trait
random
regression
test-day
model.
Genomic
that
explained
at
least
0.5%
genetic
variance
selected
for
further
analyses
candidate
genes.
Despite
small
number
genotyped
animals,
predictions
led
an
improvement
accuracy
over
traditional
BLUP.
ssGBLUP
slightly
better
than
ssGBLUP.
milk
production
traits
contained
210
on
19
chromosomes
[Bos
taurus
autosome
(BTA)
1
7,
9,
11
16,
20
21,
26
27
29],
whereas
21
3
(BTA
11,
21)
SCS.
Many
fraction
variance,
indicating
polygenic
inheritance
studied
traits.
Several
coincided
previous
reports
Holstein
cattle,
especially
large
region
BTA14.
We
identified
141
5
novel
related
SCS,
respectively.
These
also
found
be
functionally
heat
tolerance
(e.g.,
SLC45A2,
IRAG1,
LOC101902172),
longevity
SYT10
LOC101903327),
fertility
PAG1).
findings
may
attributed
indirect
selection
our
Identified
biological
networks
including
intracellular
transportation
protein
catabolism
implicate
production,
immunological
such
lymphocyte
activation
closely
Further
required
validate
before
exploiting
them
selection.
Biological reviews/Biological reviews of the Cambridge Philosophical Society,
Год журнала:
2023,
Номер
98(4), С. 1250 - 1277
Опубликована: Апрель 5, 2023
ABSTRACT
Vertebrate
pigmentation
patterns
are
amongst
the
best
characterised
model
systems
for
studying
genetic
basis
of
adaptive
evolution.
The
wealth
available
data
on
evolution
allows
analysis
trends
and
quantitative
testing
evolutionary
hypotheses.
We
employed
Gephebase
,
a
database
variants
associated
with
natural
domesticated
trait
variation,
to
examine
in
how
cis
‐regulatory
coding
mutations
contribute
vertebrate
phenotypes,
as
well
factors
that
favour
one
mutation
type
over
other.
found
studies
lower
ascertainment
bias
identified
higher
proportions
mutations,
were
more
common
animals
harbouring
number
pigment
cell
classes.
classified
traits
firstly
according
their
physiological
secondly
whether
they
affect
colour
or
pattern,
carotenoid‐based
variation
pattern
boundaries
preferentially
change.
also
genes
developmental,
cellular,
molecular
functions.
greater
proportion
implicated
upstream
developmental
processes
compared
those
involved
downstream
cellular
functions,
ligands
than
respective
receptors.
Based
these
trends,
we
discuss
future
directions
research
Molecular Ecology,
Год журнала:
2024,
Номер
33(12)
Опубликована: Май 7, 2024
As
modern
humans
ventured
out
of
Africa
and
dispersed
around
the
world,
they
faced
novel
environmental
challenges
that
led
to
geographic
adaptations
including
skin
colour.
Over
long
history
human
evolution,
colour
has
changed
dramatically,
showing
tremendous
diversity
across
different
geographical
regions,
for
example,
majority
individuals
from
expansive
lands
have
darker
skin,
whereas
people
Eurasia
exhibit
lighter
skin.
What
did
confer
upon
as
migrated
Eurasia?
genetic
mechanisms
underlie
observed
in
populations?
In
recent
years,
scientists
gradually
gained
a
deeper
understanding
interactions
between
pigmentation
gene
through
population-based
genomic
studies
groups
particularly
East
Asia
Africa.
this
review,
we
summarize
our
current
26
colour-related
genes
48
SNPs
influence
Important
three
major
populations
are
described
detail:
MFSD12,
SLC24A5,
PDPK1
DDB1/CYB561A3/TMEM138
African
populations;
OCA2,
KITLG,
SLC24A2,
GNPAT
PAH
key
evolution
Asian
SLC45A2,
TYR,
TYRP1,
ASIP,
MC1R
IRF4
significantly
contribute
lightening
European
populations.
We
summarized
findings
implicate
diverse
environments,
local
adaptation
among
populations,
flow
multi-gene
factors
influencing
diversity.