Genome Sequencing reveals the impact of non-canonical exon inclusions in rare genetic disease DOI Creative Commons

Georgia Pitsava,

Megan H. Hawley,

Light Auriga

и другие.

medRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 26, 2024

Abstract Introduction Advancements in sequencing technologies have significantly improved clinical genetic testing, yet the diagnostic yield remains around 30-40%. Emerging are now being deployed setting to address remaining gap. Methods We tested whether short-read genome could increase individuals enrolled into UCI-GREGoR research study, who had suspected Mendelian conditions and prior inconclusive testing. Two other collaborative cohorts, focused on aortopathy dilated cardiomyopathy, consisted of were undiagnosed but not undergone harmonized Results sequenced 353 families (754 participants) found a molecular diagnosis 54 (15.3%) them. Of these diagnoses, 55.5% previously missed because causative variants regions interrogated by original In 9 cases, they deep intronic variants, 5 which led abnormal splicing cryptic exon inclusion, as directly shown RNA sequencing. All spliceAI scores. 26% newly diagnosed causal variant been detected exome reanalysis. Conclusion Genome overcomes multiple limitations such inability call technical limitations. Our findings highlight inclusion common mechanism via cause disease. However, also reinforce that reanalysis datasets can be fruitful approach.

Язык: Английский

HERV-W Env Induces Neuron Pyroptosis via the NLRP3–CASP1–GSDMD Pathway in Recent-Onset Schizophrenia DOI Open Access
Jia Chen, Mengqi Zhang, Xiulin Wu

и другие.

International Journal of Molecular Sciences, Год журнала: 2025, Номер 26(2), С. 520 - 520

Опубликована: Янв. 9, 2025

HERVs (Human endogenous retroviruses) are remnants of ancient exogenous retroviruses that have integrated into the human genome, particularly in germ-line cells. Among these, envelope protein gene HERV-W env W family protein), located on chromosome 7 and primarily expressed placenta, has been closely linked to various neuropsychiatric disorders, including schizophrenia, as well autoimmune diseases cancer. Recent studies highlighted abnormal expression cytokines a key factor pathophysiology schizophrenia. Notably, elevated serum levels IL-1β (interleukin 1 beta) cytokine associated with inflammation, characteristic feature pyroptosis-a form pro-inflammatory programmed cell death. Although previous research observed significant upregulation pyroptosis-related genes such CASP1 (Caspase-1), NLRP3 (NLR pyrin domain containing 3), IL1B schizophrenia patients, extensive neuron pyroptosis documented Alzheimer's disease, epilepsy, multiple sclerosis, occurrence remains uncertain. Furthermore, mechanisms underlying its potential connection yet be fully elucidated. In this study, we found genes, specifically CASP1, GSDMD (Gasdermin D), IL1B, were significantly patients compared healthy controls. our analysis revealed strong positive correlation between CASP1/GSDMD/IL1B these patients. Experimental evidence further demonstrated promoted activation Caspase-1 cleavage Gasdermin D, leading increased release LDH (lactate dehydrogenase) IL-1β. Importantly, inhibitors targeting NLRP3, reduced releases induced by env, whereas BID (BH3 interacting death agonist) did not notable effect. This suggests induces CASP1-GSDMD-dependent through NLRP3-CASP1-GSDMD signaling pathway. As is increasingly recognized for neurodegenerative diseases, study provides insights molecular neuronal mediated inflammasome context env. Additionally, it explores facilitation development via pyroptosis, proposing certain indicators could serve biomarkers Based existing results findings researchers, infer acts bridge onset progression may target clinical treatment suggesting monoclonal antibody therapy represent novel approach managing disease.

Язык: Английский

Процитировано

0

Genome Sequencing reveals the impact of non-canonical exon inclusions in rare genetic disease DOI Creative Commons

Georgia Pitsava,

Megan H. Hawley,

Light Auriga

и другие.

medRxiv (Cold Spring Harbor Laboratory), Год журнала: 2024, Номер unknown

Опубликована: Дек. 26, 2024

Abstract Introduction Advancements in sequencing technologies have significantly improved clinical genetic testing, yet the diagnostic yield remains around 30-40%. Emerging are now being deployed setting to address remaining gap. Methods We tested whether short-read genome could increase individuals enrolled into UCI-GREGoR research study, who had suspected Mendelian conditions and prior inconclusive testing. Two other collaborative cohorts, focused on aortopathy dilated cardiomyopathy, consisted of were undiagnosed but not undergone harmonized Results sequenced 353 families (754 participants) found a molecular diagnosis 54 (15.3%) them. Of these diagnoses, 55.5% previously missed because causative variants regions interrogated by original In 9 cases, they deep intronic variants, 5 which led abnormal splicing cryptic exon inclusion, as directly shown RNA sequencing. All spliceAI scores. 26% newly diagnosed causal variant been detected exome reanalysis. Conclusion Genome overcomes multiple limitations such inability call technical limitations. Our findings highlight inclusion common mechanism via cause disease. However, also reinforce that reanalysis datasets can be fruitful approach.

Язык: Английский

Процитировано

0