The American Naturalist,
Год журнала:
2014,
Номер
183(2), С. 174 - 187
Опубликована: Янв. 2, 2014
The
evolution
of
traits
involved
in
ecological
interactions
such
as
predator-prey,
host-parasite,
and
plant-pollinator
interactions,
are
likely
to
be
shaped
by
the
phylogenetic
history
both
parties.
We
develop
generalized
linear
mixed-effects
models
(GLMM)
that
estimate
effect
parties'
on
trait
evolution,
isolation
but
also
terms
how
two
histories
interact.
Using
data
incidence
abundance
206
flea
species
121
mammal
species,
we
illustrate
our
method
compare
it
previously
used
methods
for
detecting
host-parasite
coevolution.
At
large
spatial
scales
find
interaction
was
substantial,
indicating
related
parasite
were
more
found
host
species.
smaller
scales,
when
sampling
effort
not
controlled
for,
effects
number
types
harbored
hosts
dominate.
go
show
situations
where
these
additional
exist,
then
previous
have
very
high
Type
I
error
rates
testing
interaction.
Our
GLMM
represents
a
robust
reliable
approach
quantify
determined
by,
or
defined
has
advantage
can
easily
extended
interpreted
broader
context
than
existing
permutation
tests.
Ecology Letters,
Год журнала:
2010,
Номер
13(10), С. 1310 - 1324
Опубликована: Июль 22, 2010
Abstract
The
diversity
of
life
is
ultimately
generated
by
evolution,
and
much
attention
has
focused
on
the
rapid
evolution
ecological
traits.
Yet,
tendency
for
many
traits
to
instead
remain
similar
over
time
[niche
conservatism
(NC)]
consequences
fundamental
patterns
processes
studied
in
ecology
conservation
biology.
Here,
we
describe
mounting
evidence
importance
NC
major
topics
(e.g.
species
richness,
ecosystem
function)
climate
change,
invasive
species).
We
also
review
other
areas
where
it
may
be
important
but
generally
been
overlooked,
both
food
webs,
disease
ecology,
mutualistic
interactions)
habitat
modification).
summarize
methods
testing
NC,
suggest
that
a
commonly
used
advocated
method
(involving
test
phylogenetic
signal)
potentially
problematic,
alternative
approaches.
considering
NC:
(1)
focuses
within‐species
cause
conserved
time,
(2)
emphasizes
connections
between
questions
research
are
not
obviously
related
invasives,
global
warming,
tropical
richness),
(3)
suggests
new
why
some
clades
largely
nocturnal?
do
share
diseases?).
Nature,
Год журнала:
2017,
Номер
546(7660), С. 646 - 650
Опубликована: Июнь 20, 2017
Analysis
of
a
comprehensive
database
mammalian
host–virus
relationships
reveals
that
both
the
total
number
viruses
infect
given
species
and
proportion
likely
to
be
zoonotic
are
predictable
this
enables
identification
geographic
locations
where
novel
zoonoses
found.
Zoonotic
viruses,
many
originating
in
wild
mammals,
pose
serious
threat
global
public
health.
Peter
Daszak
colleagues
create
relationships,
which
they
analyse
determine
patterns
virus
distribution
mammals.
They
identify
various
factors
influence
diversity
as
well
predict
per
species.
In
doing
so,
The
majority
human
emerging
infectious
diseases
zoonotic,
with
originate
mammals
particular
concern
(for
example,
HIV,
Ebola
SARS)1,2,3.
Understanding
viral
wildlife
determinants
successful
cross-species
transmission,
or
spillover,
therefore
key
goals
for
pandemic
surveillance
programs4.
However,
few
analytical
tools
exist
host
harbour
next
virus,
can
cross
boundaries5,6,7.
Here
we
conduct
analysis
show
predictable.
After
controlling
research
effort,
is
predicted
by
phylogenetic
relatedness
humans,
taxonomy
population
within
range—which
may
reflect
human–wildlife
contact.
We
demonstrate
bats
significantly
higher
than
all
other
orders.
also
taxa
regions
largest
estimated
'missing
viruses'
zoonoses'
highest
value
future
surveillance.
then
breadth
traits
significant
predictors
potential,
providing
framework
assess
if
newly
discovered
could
people.
The Lancet,
Год журнала:
2012,
Номер
380(9857), С. 1956 - 1965
Опубликована: Ноя. 30, 2012
Most
pandemics--eg,
HIV/AIDS,
severe
acute
respiratory
syndrome,
pandemic
influenza--originate
in
animals,
are
caused
by
viruses,
and
driven
to
emerge
ecological,
behavioural,
or
socioeconomic
changes.
Despite
their
substantial
effects
on
global
public
health
growing
understanding
of
the
process
which
they
emerge,
no
has
been
predicted
before
infecting
human
beings.
We
review
what
is
known
about
pathogens
that
hosts
originate
in,
factors
drive
emergence.
discuss
challenges
control
new
efforts
predict
pandemics,
target
surveillance
most
crucial
interfaces,
identify
prevention
strategies.
New
mathematical
modelling,
diagnostic,
communications,
informatics
technologies
can
report
hitherto
unknown
microbes
other
species,
thus
risk
assessment
approaches
needed
likely
cause
disease.
lay
out
a
series
research
opportunities
goals
could
help
overcome
these
move
strategy
from
response
pre-emption.
Proceedings of the Royal Society B Biological Sciences,
Год журнала:
2013,
Номер
280(1756), С. 20122753 - 20122753
Опубликована: Фев. 1, 2013
Bats
are
the
natural
reservoirs
of
a
number
high-impact
viral
zoonoses.
We
present
quantitative
analysis
to
address
hypothesis
that
bats
unique
in
their
propensity
host
zoonotic
viruses
based
on
comparison
with
rodents,
another
important
order.
found
indeed
more
per
species
than
and
we
identified
life-history
ecological
factors
promote
richness.
More
hosted
by
whose
distributions
overlap
greater
other
same
taxonomic
order
(sympatry).
Specifically
bats,
there
was
evidence
for
increased
richness
smaller
litters
(one
young),
longevity
year.
Furthermore,
our
results
point
new
explain
part
why
species:
stronger
effect
sympatry
shared
between
bat
suggests
interspecific
transmission
is
prevalent
among
rodents.
Although
species,
total
(61)
lower
rodents
(68),
result
being
approximately
twice
rodent
as
species.
Therefore,
should
still
be
serious
concern
emerging
viruses.
These
findings
shed
light
disease
emergence
perpetuation
mechanisms
may
help
lead
predictive
framework
identifying
future
infectious
virus
reservoirs.
Evolutionary Anthropology Issues News and Reviews,
Год журнала:
2010,
Номер
19(3), С. 114 - 118
Опубликована: Май 1, 2010
The
comparative
method
plays
a
central
role
in
efforts
to
uncover
the
adaptive
basis
for
primate
behaviors,
morphological
traits,
and
cognitive
abilities.1-4
has
been
used,
example,
infer
that
living
larger
group
selects
neocortex,5,
6
territoriality
favors
longer
day
range
relative
home
size,7
sperm
competition
can
account
evolution
of
testes
size.8,
9
Comparison
is
fundamental
reconstructing
behavioral
traits
fossil
record,
studies
locomotion
diet.10-13
Recent
advances
methods
require
phylogenetic
information,2,
14-16
but
our
knowledge
information
imperfect.
In
face
uncertainty
about
evolutionary
relationships,
which
phylogeny
should
one
use?
Here
we
provide
new
resource
primates
enables
users
run
analyses
on
multiple
phylogenies
Importantly,
10,000
trees
are
not
random,
instead
use
recent
systematic
create
plausible
set
topologies
reflect
certainty
some
nodes
tree
other
nodes,
given
dataset.
also
branch
lengths.
Animal Conservation,
Год журнала:
2009,
Номер
12(1), С. 1 - 12
Опубликована: Янв. 28, 2009
Abstract
Recent
increases
in
the
magnitude
and
rate
of
environmental
change,
including
habitat
loss,
climate
change
overexploitation,
have
been
directly
linked
to
global
loss
biodiversity.
Wildlife
extinction
rates
are
estimated
be
100–1000
times
greater
than
historical
norm,
up
50%
higher
taxonomic
groups
critically
endangered.
While
many
types
changes
threaten
survival
species
all
over
planet,
infectious
disease
has
rarely
cited
as
primary
cause
extinctions.
There
is
substantial
evidence,
however,
that
diseases
can
greatly
impact
local
populations
by
causing
temporary
or
permanent
declines
abundance.
More
importantly,
pathogens
interact
with
other
driving
factors,
such
invasive
pollution
contribute
Regrettably,
our
current
lack
knowledge
about
diversity
abundance
natural
systems
made
it
difficult
establish
relative
importance
a
significant
driver
extinction,
context
when
this
most
likely
occur.
Here,
we
review
role
biological
conservation.
We
summarize
existing
disease‐induced
at
scales
ecological
evolutionary
forces
may
facilitate
disease‐mediated
risk.
suggest
while
alone
currently
few
species,
threat
already‐endangered
especially
interacts
drivers.
identify
control
strategies
help
reduce
negative
effects
on
wildlife
discuss
critical
challenges
future
directions
for
study
conservation
sciences.
Science,
Год журнала:
2010,
Номер
329(5992), С. 676 - 679
Опубликована: Авг. 5, 2010
For
RNA
viruses,
rapid
viral
evolution
and
the
biological
similarity
of
closely
related
host
species
have
been
proposed
as
key
determinants
occurrence
long-term
outcome
cross-species
transmission.
Using
a
data
set
hundreds
rabies
viruses
sampled
from
23
North
American
bat
species,
we
present
general
framework
to
quantify
per
capita
rates
transmission
reconstruct
historical
patterns
establishment
in
new
using
molecular
sequence
data.
These
estimates
demonstrate
diminishing
frequencies
both
shifts
with
increasing
phylogenetic
distance
between
species.
Evolutionary
constraints
on
range
indicate
that
barriers
may
trump
intrinsic
mutability
determining
fate
emerging
host-virus
interactions.
Philosophical Transactions of the Royal Society B Biological Sciences,
Год журнала:
2012,
Номер
367(1604), С. 2864 - 2871
Опубликована: Сен. 10, 2012
There
are
219
virus
species
that
known
to
be
able
infect
humans.
The
first
of
these
discovered
was
yellow
fever
in
1901,
and
three
four
new
still
being
found
every
year.
Extrapolation
the
discovery
curve
suggests
there
is
a
substantial
pool
undiscovered
human
species,
although
an
apparent
slow-down
rate
from
different
families
may
indicate
bounds
potential
range
diversity.
More
than
two-thirds
viruses
can
also
non-human
hosts,
mainly
mammals,
sometimes
birds.
Many
specialist
have
mammalian
or
avian
origins.
Indeed,
proportion
capable
crossing
barrier
into
humans,
only
around
half
transmitted
by
humans
again
transmitting
well
enough
cause
major
outbreaks.
A
few
possible
predictors
jumps
identified,
including
use
phylogenetically
conserved
cell
receptors.
It
seems
almost
inevitable
will
continue
emerge,
other
mammals
birds,
for
foreseeable
future.
For
this
reason,
effective
global
surveillance
system
novel
needed.
PLoS Pathogens,
Год журнала:
2014,
Номер
10(11), С. e1004395 - e1004395
Опубликована: Ноя. 6, 2014
Emerging
viral
diseases
are
often
the
product
of
a
host
shift,
where
pathogen
jumps
from
its
original
into
novel
species.
Phylogenetic
studies
show
that
shifts
frequent
event
in
evolution
most
pathogens,
but
why
pathogens
successfully
jump
between
some
species
not
others
is
only
just
becoming
clear.
The
susceptibility
potential
new
hosts
can
vary
enormously,
with
close
relatives
natural
typically
being
susceptible.
Often,
must
adapt
to
infect
host,
for
example
by
evolving
use
different
cell
surface
receptors,
escape
immune
response,
or
ensure
they
transmitted
host.
In
viruses
there
limited
molecular
solutions
achieve
this,
and
same
sequence
changes
seen
each
time
virus
infects
particular
These
may
come
at
cost
other
aspects
pathogen's
fitness,
this
sometimes
prevent
occurring.
Here
we
examine
how
these
evolutionary
factors
affect
patterns
disease
emergence.
PLoS ONE,
Год журнала:
2015,
Номер
10(7), С. e0134116 - e0134116
Опубликована: Июль 29, 2015
Gastric
acidity
is
likely
a
key
factor
shaping
the
diversity
and
composition
of
microbial
communities
found
in
vertebrate
gut.
We
conducted
systematic
review
to
test
hypothesis
that
role
stomach
maintain
gut
community
by
filtering
out
novel
taxa
before
they
pass
into
intestines.
propose
species
feeding
either
on
carrion
or
organisms
are
close
phylogenetic
relatives
should
require
most
restrictive
filter
(measured
as
high
acidity)
protection
from
foreign
microbes.
Conversely,
lower
trophic
level
food
distantly
related
them
(e.g.
herbivores)
least
filter,
risk
pathogen
exposure
lower.
Comparisons
across
groups
mammal
bird
show
scavengers
carnivores
have
significantly
higher
acidities
compared
herbivores
phylogenetically
distant
prey
such
insects
fish.
In
addition,
we
find
when
varies
within
naturally
(with
age)
treatments
bariatric
surgery,
effects
bacterial
pathogens
line
with
our
acts
an
ecological
filter.
Together
these
results
highlight
importance
including
measurements
gastric
pH
investigating
dynamics
species.